Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0176321 Rosa chinensis HOM05D007395 ORTHO05D009347 1.9e-70 269.6 198 100.0
FAN05G4833 Fragaria x ananassa HOM05D007395 ORTHO05D009347 1.0e-47 194.1 179 72.6
FAN02G3713 Fragaria x ananassa HOM05D007395 ORTHO05D009347 3.2e-46 189.1 179 70.4
FAN05G3246 Fragaria x ananassa HOM05D007395 ORTHO05D009347 3.2e-46 189.1 179 70.4
FvH4_6g54150 Fragaria vesca HOM05D007395 ORTHO05D009347 7.2e-46 188.0 179 72.6
FAN09G3300 Fragaria x ananassa HOM05D007395 ORTHO05D009347 2.7e-45 186.0 179 72.1
FAN14G5742 Fragaria x ananassa HOM05D007395 ORTHO05D009347 2.7e-45 186.0 179 72.1
Prupe.3G311900 Prunus persica HOM05D007395 ORTHO05D009347 2.6e-40 169.5 185 64.3
MD17G1008900 Malus domestica HOM05D007395 ORTHO05D009347 1.4e-36 157.1 185 65.4
MD09G1004900 Malus domestica HOM05D007395 ORTHO05D009347 2.3e-36 156.4 185 62.2
Atru.chr6.2633 Acer truncatum HOM05D007395 ORTHO05D009347 5.9e-24 115.2 176 57.4
Cpa.g.sc70.86 Carica papaya HOM05D007395 ORTHO05D009347 1.4e-20 104.0 212 44.8
ClCG01G008240 Citrullus lanatus HOM05D007395 ORTHO05D009347 4.0e-20 102.4 197 45.7
QL02p070020 Quercus lobata HOM05D007395 ORTHO05D009347 2.6e-19 99.8 204 53.4
CiPaw.03G003300 Carya illinoinensis HOM05D007395 ORTHO05D009347 7.5e-19 98.2 188 50.0
Aa31LG1G1930 Aethionema arabicum HOM05D007395 ORTHO05D009347 2.4e-17 93.2 212 38.7
MELO3C025062.2 Cucumis melo HOM05D007395 ORTHO05D009347 4.1e-17 92.4 199 48.7
Sed0007630 Sechium edule HOM05D007395 ORTHO05D009347 5.4e-17 92.0 195 48.7
CsaV3_5G020150 Cucumis sativus L. HOM05D007395 ORTHO05D009347 1.2e-16 90.9 201 47.8
Ca_08120_v3 Cicer arietinum L. HOM05D007395 ORTHO05D009347 1.6e-16 90.5 173 49.1
BcaB08g34248 Brassica carinata HOM05D007395 ORTHO05D009347 4.5e-16 89.0 183 44.3
MELO3C008464.2 Cucumis melo HOM05D007395 ORTHO05D009347 1.0e-15 87.8 198 44.4
Oeu013474.1 Olea europaea HOM05D007395 ORTHO05D009347 1.3e-15 87.4 194 43.8
Oeu013475.1 Olea europaea HOM05D007395 ORTHO05D009347 1.3e-15 87.4 194 43.8
Oeu013476.1 Olea europaea HOM05D007395 ORTHO05D009347 1.3e-15 87.4 194 43.8
THA.LOC104805310 Tarenaya hassleriana HOM05D007395 ORTHO05D009347 1.3e-15 87.4 192 40.6
TAR371G0182 Trochodendron aralioides HOM05D007395 ORTHO05D009347 1.3e-15 87.4 178 44.4
Actinidia37733 Actinidia chinensis HOM05D007395 ORTHO05D009347 1.7e-15 87.0 199 44.7
BolC8t49196H Brassica oleracea HOM05D007395 ORTHO05D009347 1.7e-15 87.0 179 46.4
Thhalv10008746m.g Eutrema salsugineum HOM05D007395 ORTHO05D009347 1.7e-15 87.0 211 40.3
BcaB03g13164 Brassica carinata HOM05D007395 ORTHO05D009347 2.2e-15 86.7 184 40.8
BcaC07g41677 Brassica carinata HOM05D007395 ORTHO05D009347 2.2e-15 86.7 196 41.8
BolC8t52248H Brassica oleracea HOM05D007395 ORTHO05D009347 2.2e-15 86.7 196 41.8
Thecc.04G044800 Theobroma cacao HOM05D007395 ORTHO05D009347 5.0e-15 85.5 176 51.1
TWI73G1187 Tripterygium wilfordii HOM05D007395 ORTHO05D009347 6.5e-15 85.1 190 47.4
Psat3g094200 Pisum sativum HOM05D007395 ORTHO05D009347 1.5e-14 84.0 180 54.4
BolC8t50971H Brassica oleracea HOM05D007395 ORTHO05D009347 1.9e-14 83.6 194 42.3
AT1G12830 Arabidopsis thaliana HOM05D007395 ORTHO05D009347 3.2e-14 82.8 202 41.1
Ciclev10016987m.g Citrus clementina HOM05D007395 ORTHO05D009347 3.2e-14 82.8 179 49.2
Duzib187G0287 Durio zibethinus HOM05D007395 ORTHO05D009347 5.5e-14 82.0 176 54.0
Sc03g0004880 Simmondsia chinensis HOM05D007395 ORTHO05D009347 7.2e-14 81.6 179 43.0
Cfa007180 Carpinus fangiana HOM05D007395 ORTHO05D009347 9.4e-14 81.3 195 46.2
C08p15690 Brassica napus HOM05D007395 ORTHO05D009347 1.2e-13 80.9 179 46.4
THA.LOC104825649 Tarenaya hassleriana HOM05D007395 ORTHO05D009347 1.2e-13 80.9 212 36.8
TWI09G1106 Tripterygium wilfordii HOM05D007395 ORTHO05D009347 1.2e-13 80.9 190 48.9
Medtr7g083640 Medicago truncatula HOM05D007395 ORTHO05D009347 1.6e-13 80.5 171 55.6
BcaC07g40271 Brassica carinata HOM05D007395 ORTHO05D009347 6.1e-13 78.6 185 41.6
C08p33720 Brassica napus HOM05D007395 ORTHO05D009347 6.1e-13 78.6 185 41.6
Lj1g0024459 Lotus japonicus HOM05D007395 ORTHO05D009347 6.1e-13 78.6 198 49.5
Nitab4.5_0000519g0230 Nicotiana tabacum HOM05D007395 ORTHO05D009347 6.1e-13 78.6 93 53.8
Carub.0001s1257 Capsella rubella HOM05D007395 ORTHO05D009347 8.0e-13 78.2 205 39.5
AL1G24470 Arabidopsis lyrata HOM05D007395 ORTHO05D009347 1.4e-12 77.4 208 42.3
C08p47090 Brassica napus HOM05D007395 ORTHO05D009347 1.4e-12 77.4 88 65.9
EL10Ac6g13382 Beta vulgaris HOM05D007395 ORTHO05D009347 1.8e-12 77.0 176 51.1
Lsat_1_v5_gn_2_94600 Lactuca sativa HOM05D007395 ORTHO05D009347 2.3e-12 76.6 94 54.3
BraA09t41709Z Brassica rapa HOM05D007395 ORTHO05D009347 5.2e-12 75.5 178 41.6
CAN.G473.152 Capsicum annuum HOM05D007395 ORTHO05D009347 1.5e-11 73.9 92 50.0
TAR622G0576 Trochodendron aralioides HOM05D007395 ORTHO05D009347 2.0e-11 73.6 183 44.3
Gohir.D07G237800 Gossypium hirsutum HOM05D007395 ORTHO05D009347 2.6e-11 73.2 178 46.1
Lalb_Chr14g0363911 Lupinus albus HOM05D007395 ORTHO05D009347 5.7e-11 72.0 182 47.3
A09p63590 Brassica napus HOM05D007395 ORTHO05D009347 9.8e-11 71.2 178 42.1
COL.COLO4_13341 Corchorus olitorius HOM05D007395 ORTHO05D009347 1.3e-10 70.9 177 48.0
Gorai.001G273600 Gossypium raimondii HOM05D007395 ORTHO05D009347 1.3e-10 70.9 183 50.3
PGSC0003DMG400020197 Solanum tuberosum HOM05D007395 ORTHO05D009347 2.2e-10 70.1 180 40.0
Gohir.A07G230500 Gossypium hirsutum HOM05D007395 ORTHO05D009347 6.3e-10 68.6 183 50.8
Nitab4.5_0002172g0070 Nicotiana tabacum HOM05D007395 ORTHO05D009347 6.3e-10 68.6 93 52.7
A08p32600 Brassica napus HOM05D007395 ORTHO05D009347 1.1e-09 67.8 176 40.9
PGR142G0951 Punica granatum HOM05D007395 ORTHO05D009347 1.1e-09 67.8 202 44.6
BraA08t35184Z Brassica rapa HOM05D007395 ORTHO05D009347 3.1e-09 66.2 176 40.3
CiPaw.04G002100 Carya illinoinensis HOM05D007395 ORTHO05D009347 3.1e-09 66.2 184 51.1
CDE06G0177 Ceratophyllum demersum HOM05D007395 ORTHO05D009347 4.1e-09 65.9 89 44.9
AUR62037845 Chenopodium quinoa HOM05D007395 ORTHO05D009347 9.2e-09 64.7 180 43.3
Nn4g22190 Nelumbo nucifera HOM05D007395 ORTHO05D009347 9.2e-09 64.7 89 51.7
PSO478G2466 Papaver somniferum HOM05D007395 ORTHO05D009347 9.2e-09 64.7 99 54.5
CARHR013150 Cardamine hirsuta HOM05D007395 ORTHO05D009347 2.0e-08 63.5 216 38.4
MBI07_g36278_MAGBIO Magnolia biondii HOM05D007395 ORTHO05D009347 2.0e-08 63.5 43 72.1
C05p10450 Brassica napus HOM05D007395 ORTHO05D009347 2.7e-08 63.2 175 40.0
Duzib264G0040 Durio zibethinus HOM05D007395 ORTHO05D009347 2.7e-08 63.2 43 72.1
Cc01_g06470 Coffea canephora HOM05D007395 ORTHO05D009347 5.9e-08 62.0 209 36.8
Manes.11G078500 Manihot esculenta HOM05D007395 ORTHO05D009347 5.9e-08 62.0 201 43.3
PSO017G4963 Papaver somniferum HOM05D007395 ORTHO05D009347 7.7e-08 61.6 148 43.2
Sabra17G0054500 Salix brachista HOM05D007395 ORTHO05D009347 7.7e-08 61.6 186 42.5
SalBow5G2300 Salvia bowleyana HOM05D004940 ORTHO05D007805 7.7e-08 61.6 38 76.3
Duzib147G0006 Durio zibethinus HOM05D007395 ORTHO05D009347 2.3e-07 60.1 189 41.8
MSTRG.20550 Avicennia marina HOM05D007395 ORTHO05D009347 3.8e-07 59.3 190 45.8
DCAR_014479 Daucus carota HOM05D007395 ORTHO05D009347 3.8e-07 59.3 83 55.4
Glyma.16G050400 Glycine max HOM05D007395 ORTHO05D009347 3.8e-07 59.3 179 40.8
Manes.04G091600 Manihot esculenta HOM05D007395 ORTHO05D009347 6.6e-07 58.5 43 69.8
Aqoxy5G03201 Aquilegia oxysepala HOM05D007395 ORTHO05D009347 8.6e-07 58.2 188 47.9
Sp1g11400 Schrenkiella parvula HOM05D007395 ORTHO05D009347 1.5e-06 57.4 207 36.7
Sabra16G0204900 Salix brachista HOM05D007395 ORTHO05D009347 5.6e-06 55.5 183 42.6
Potri.017G061400 Populus trichocarpa HOM05D007395 ORTHO05D009347 9.5e-06 54.7 185 42.7


User provided reference genes

Program Settings