Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0175631 Rosa chinensis HOM05D013926 ORTHO05D020985 4.3e-158 561.2 271 100.0
RcHm_v2.0_Chr7g0195521 Rosa chinensis HOM05D013926 ORTHO05D020985 6.4e-138 494.2 271 91.1
RcHm_v2.0_Chr4g0388241 Rosa chinensis HOM05D013926 ORTHO05D020985 1.4e-100 370.2 188 96.3
RcHm_v2.0_Chr4g0414451 Rosa chinensis HOM05D013926 ORTHO05D343283 8.8e-71 271.2 127 97.6
RcHm_v2.0_Chr5g0011621 Rosa chinensis HOM05D013926 ORTHO05D020985 1.1e-60 237.7 286 50.7
RcHm_v2.0_Chr7g0185391 Rosa chinensis HOM05D013926 ORTHO05D020985 2.0e-43 180.3 119 73.1
RcHm_v2.0_Chr1g0364171 Rosa chinensis HOM05D000122 ORTHO05D020985 1.1e-33 147.9 233 42.5
RcHm_v2.0_Chr1g0359401 Rosa chinensis HOM05D013926 ORTHO05D347224 1.2e-32 144.4 65 100.0
RcHm_v2.0_Chr2g0161601 Rosa chinensis HOM05D006059 ORTHO05D010613 1.7e-18 97.4 286 31.8
RcHm_v2.0_Chr4g0417091 Rosa chinensis HOM05D013926 ORTHO05D344408 1.1e-15 88.2 176 37.5
RcHm_v2.0_Chr2g0135791 Rosa chinensis HOM05D013926 ORTHO05D020985 1.4e-15 87.8 66 69.7
RcHm_v2.0_Chr2g0116941 Rosa chinensis HOM05D021305 ORTHO05D010102 1.5e-14 84.3 103 46.6
FAN27G2436 Fragaria x ananassa HOM05D006059 ORTHO05D010613 3.8e-13 79.7 189 33.9
RcHm_v2.0_Chr5g0057351 Rosa chinensis HOM05D006059 ORTHO05D010613 6.4e-13 79.0 151 37.7
FAN25G3455 Fragaria x ananassa HOM05D006059 ORTHO05D207604 1.9e-12 77.4 144 37.5
FAN18G3353 Fragaria x ananassa HOM05D006059 ORTHO05D010613 5.4e-12 75.9 144 37.5
RcHm_v2.0_Chr1g0363721 Rosa chinensis HOM05D018137 ORTHO05D343934 1.6e-11 74.3 273 30.8
FAN12G1423 Fragaria x ananassa HOM05D006059 ORTHO05D010613 2.7e-11 73.6 129 38.8
RcHm_v2.0_Chr4g0398671 Rosa chinensis HOM05D000003 ORTHO05D010102 7.8e-11 72.0 46 73.9
FvH4_3g36310 Fragaria vesca HOM05D006059 ORTHO05D000610 1.3e-10 71.2 177 32.8
FAN06G2872 Fragaria x ananassa HOM05D006059 ORTHO05D010613 1.7e-10 70.9 114 39.5
FvH4_5g36190 Fragaria vesca HOM05D006059 ORTHO05D046011 1.1e-09 68.2 155 34.8
RcHm_v2.0_Chr5g0068051 Rosa chinensis HOM05D000642 ORTHO05D000483 1.5e-09 67.8 50 66.0
FvH4_6g48101 Fragaria vesca HOM05D006059 ORTHO05D198592 1.9e-09 67.4 111 39.6
RcHm_v2.0_Chr6g0279821 Rosa chinensis HOM05D006059 ORTHO05D010613 3.3e-09 66.6 116 36.2
FAN11G1542 Fragaria x ananassa HOM05D006059 ORTHO05D210510 4.8e-08 62.8 119 37.8
FAN02G0158 Fragaria x ananassa HOM05D006059 ORTHO05D207876 6.2e-08 62.4 103 39.8
FAN19G2339 Fragaria x ananassa HOM05D013926 ORTHO05D208244 3.1e-07 60.1 67 50.7
FAN25G3073 Fragaria x ananassa HOM05D006059 ORTHO05D022634 3.1e-07 60.1 117 33.3
FAN03G3436 Fragaria x ananassa HOM05D006059 ORTHO05D010613 4.0e-07 59.7 156 33.3
FAN02G0790 Fragaria x ananassa HOM05D006059 ORTHO05D010613 5.3e-07 59.3 157 34.4
FAN13G2239 Fragaria x ananassa HOM05D006059 ORTHO05D010613 5.3e-07 59.3 157 34.4
FAN16G0265 Fragaria x ananassa HOM05D006059 ORTHO05D010613 6.9e-07 58.9 140 36.4
FAN03G3178 Fragaria x ananassa HOM05D006059 ORTHO05D022634 1.2e-06 58.2 84 41.7
RcHm_v2.0_Chr3g0468731 Rosa chinensis HOM05D008097 ORTHO05D010102 1.2e-06 58.2 52 57.7
FvH4_6g02080 Fragaria vesca HOM05D006059 ORTHO05D022634 2.0e-06 57.4 84 41.7
FAN06G4807 Fragaria x ananassa HOM05D008097 ORTHO05D010102 2.0e-06 57.4 50 52.0
FAN14G3910 Fragaria x ananassa HOM05D006059 ORTHO05D010613 2.0e-06 57.4 126 37.3
FAN10G3573 Fragaria x ananassa HOM05D006059 ORTHO05D019147 2.6e-06 57.0 133 34.6
RcHm_v2.0_Chr7g0239361 Rosa chinensis HOM05D018137 ORTHO05D340413 2.6e-06 57.0 100 39.0
FvH4_3g21341 Fragaria vesca HOM05D008097 ORTHO05D010102 5.8e-06 55.8 46 60.9
FAN09G3980 Fragaria x ananassa HOM05D006059 ORTHO05D022634 5.8e-06 55.8 84 41.7
FAN16G0608 Fragaria x ananassa HOM05D008097 ORTHO05D010102 5.8e-06 55.8 46 60.9
FAN24G1586 Fragaria x ananassa HOM05D008097 ORTHO05D010102 5.8e-06 55.8 46 60.9
FAN25G3685 Fragaria x ananassa HOM05D008097 ORTHO05D010102 5.8e-06 55.8 46 60.9
FAN25G2016 Fragaria x ananassa HOM05D008097 ORTHO05D010102 7.6e-06 55.5 45 60.0
FAN03G2020 Fragaria x ananassa HOM05D008097 ORTHO05D010102 9.9e-06 55.1 46 58.7


User provided reference genes

Program Settings