Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0175601 Rosa chinensis HOM05D001420 ORTHO05D009292 4.9e-94 347.8 181 100.0
FvH4_6g53561 Fragaria vesca HOM05D001420 ORTHO05D009292 2.1e-84 315.8 181 90.6
FAN09G1657 Fragaria x ananassa HOM05D001420 ORTHO05D009292 3.0e-83 312.0 181 89.5
FAN05G4256 Fragaria x ananassa HOM05D001420 ORTHO05D009292 2.2e-81 305.8 193 84.5
Prupe.3G306700 Prunus persica HOM05D001420 ORTHO05D009292 4.5e-79 298.1 177 88.1
FAN14G1551 Fragaria x ananassa HOM05D001420 ORTHO05D000136 1.7e-78 296.2 171 90.1
MD09G1010400 Malus domestica HOM05D001420 ORTHO05D009292 3.2e-77 292.0 174 85.6
GSVIVG01033089001 Vitis vinifera HOM05D001420 ORTHO05D009292 9.1e-72 273.9 177 79.7
Haze_14879 Corylus avellana HOM05D001420 ORTHO05D009292 1.5e-71 273.1 176 81.2
PGR142G3591 Punica granatum HOM05D001420 ORTHO05D009292 1.4e-69 266.5 175 78.3
Nitab4.5_0005161g0070 Nicotiana tabacum HOM05D001420 ORTHO05D009292 4.2e-69 265.0 177 74.0
vmacro18348 Vaccinium macrocarpon HOM05D001420 ORTHO05D009292 4.2e-69 265.0 177 73.4
Potri.001G329600 Populus trichocarpa HOM05D001420 ORTHO05D009292 2.1e-68 262.7 177 77.4
Lj1g0001542 Lotus japonicus HOM05D001420 ORTHO05D009292 1.0e-67 260.4 179 73.7
QL02p071311 Quercus lobata HOM05D001420 ORTHO05D009292 1.0e-67 260.4 176 77.3
Eucgr.I01645 Eucalyptus grandis HOM05D001420 ORTHO05D009292 1.4e-67 260.0 179 73.7
Cpa.g.sc171.11 Carica papaya HOM05D001420 ORTHO05D009292 6.7e-67 257.7 180 72.2
Nitab4.5_0000559g0390 Nicotiana tabacum HOM05D001420 ORTHO05D009292 8.8e-67 257.3 184 70.7
Medtr7g029105 Medicago truncatula HOM05D001420 ORTHO05D009292 1.1e-66 256.9 179 72.6
Oeu035224.1 Olea europaea HOM05D001420 ORTHO05D009292 1.1e-66 256.9 181 74.0
Dinv25658 Davidia involucrata HOM05D001420 ORTHO05D002488 2.0e-66 256.1 176 73.9
Thecc.04G036700 Theobroma cacao HOM05D001420 ORTHO05D009292 2.0e-66 256.1 173 74.0
CSS0004965 Camellia sinensis var. sinensis HOM05D001420 ORTHO05D009292 3.3e-66 255.4 173 74.6
Glyma.19G091500 Glycine max HOM05D001420 ORTHO05D009292 3.3e-66 255.4 179 73.2
Cc07_g00860 Coffea canephora HOM05D001420 ORTHO05D009292 7.4e-66 254.2 170 75.3
TAR622G0082 Trochodendron aralioides HOM05D001420 ORTHO05D009292 6.3e-65 251.1 169 76.3
CANSAT64G1297 Cannabis sativa HOM05D001420 ORTHO05D009292 8.2e-65 250.8 174 74.1
Duzib147G1300 Durio zibethinus HOM05D001420 ORTHO05D009292 8.2e-65 250.8 173 72.3
Migut.F00060 Erythranthe guttata HOM05D001420 ORTHO05D009292 1.4e-64 250.0 179 68.7
MSTRG.3074 Avicennia marina HOM05D001420 ORTHO05D009292 3.1e-64 248.8 180 70.0
CSS0009369 Camellia sinensis var. sinensis HOM05D001420 ORTHO05D009292 3.1e-64 248.8 187 69.5
Actinidia04437 Actinidia chinensis HOM05D001420 ORTHO05D009292 4.1e-64 248.4 170 73.5
Psat3g174720 Pisum sativum HOM05D001420 ORTHO05D002488 4.1e-64 248.4 177 70.6
TPR.G38286 Trifolium pratense HOM05D001420 ORTHO05D009292 4.1e-64 248.4 173 71.7
Hma1.2p1_1278F.1_g272270 Hydrangea macrophylla HOM05D001420 ORTHO05D009292 2.6e-63 245.7 174 71.8
VMungo1383G3091 Vigna mungo HOM05D001420 ORTHO05D009292 3.5e-63 245.4 178 69.7
Glyma.16G056200 Glycine max HOM05D001420 ORTHO05D009292 5.9e-63 244.6 177 69.5
THA.LOC104825624 Tarenaya hassleriana HOM05D001420 ORTHO05D009292 7.7e-63 244.2 176 69.3
TWI60G0015 Tripterygium wilfordii HOM05D001420 ORTHO05D009292 1.0e-62 243.8 177 71.2
MBI11_g44423_MAGBIO Magnolia biondii HOM05D001420 ORTHO05D002488 1.3e-62 243.4 173 72.8
SGA_v2.0_scaffold44G16915 Striga asiatica HOM05D001420 ORTHO05D009292 1.3e-62 243.4 177 67.8
Gohir.A09G036000 Gossypium hirsutum HOM05D001420 ORTHO05D009292 2.9e-62 242.3 171 71.9
Gorai.006G042300 Gossypium raimondii HOM05D001420 ORTHO05D009292 5.0e-62 241.5 171 71.3
arahy.Tifrunner.gnm1.ann1.WDB61R Arachis hypogaea HOM05D001420 ORTHO05D009292 1.1e-61 240.4 178 69.7
Sp2g16180 Schrenkiella parvula HOM05D001420 ORTHO05D009292 7.2e-61 237.7 180 67.2
Manes.15G161200 Manihot esculenta HOM05D001420 ORTHO05D009292 9.4e-61 237.3 171 74.3
BcaB04g19424 Brassica carinata HOM05D001420 ORTHO05D009292 2.7e-60 235.7 180 66.1
PGSC0003DMG400022915 Solanum tuberosum HOM05D001420 ORTHO05D009292 2.7e-60 235.7 174 65.5
BcaC04g23914 Brassica carinata HOM05D001420 ORTHO05D009292 4.7e-60 235.0 180 66.1
Thhalv10004992m.g Eutrema salsugineum HOM05D001420 ORTHO05D009292 4.7e-60 235.0 177 67.2
AL5G16160 Arabidopsis lyrata HOM05D001420 ORTHO05D009292 6.1e-60 234.6 181 65.7
Rhsim08G0042700 Rhododendron simsii HOM05D001420 ORTHO05D009292 6.1e-60 234.6 173 70.5
A09p03260 Brassica napus HOM05D001420 ORTHO05D009292 3.0e-59 232.3 181 66.3
BraA09t35964Z Brassica rapa HOM05D001420 ORTHO05D009292 3.0e-59 232.3 181 66.3
Lalb_Chr22g0360361 Lupinus albus HOM05D001420 ORTHO05D009292 3.0e-59 232.3 169 70.4
AT3G27050 Arabidopsis thaliana HOM05D001420 ORTHO05D009292 4.0e-59 231.9 180 65.6
Aqoxy3G01555 Aquilegia oxysepala HOM05D001420 ORTHO05D009292 5.2e-59 231.5 172 69.8
Sc15g0002740 Simmondsia chinensis HOM05D001420 ORTHO05D009292 5.2e-59 231.5 174 70.7
Aa31LG2G5540 Aethionema arabicum HOM05D001420 ORTHO05D009292 6.7e-59 231.1 180 65.6
HPP92_009721 Vanilla planifolia HOM05D001420 ORTHO05D009292 8.8e-59 230.7 168 70.8
C09p03460 Brassica napus HOM05D001420 ORTHO05D009292 1.2e-58 230.3 181 65.7
BolC9t53267H Brassica oleracea HOM05D001420 ORTHO05D009292 1.2e-58 230.3 181 65.7
AUR62017830 Chenopodium quinoa HOM05D001420 ORTHO05D009292 1.2e-58 230.3 174 68.4
CARHR148270 Cardamine hirsuta HOM05D001420 ORTHO05D009292 2.0e-58 229.6 180 64.4
Nn3g16459 Nelumbo nucifera HOM05D001420 ORTHO05D009292 3.3e-58 228.8 172 66.9
unitig_60.g25408 Utricularia gibba HOM05D001420 ORTHO05D009292 2.2e-57 226.1 180 65.0
AUR62003518 Chenopodium quinoa HOM05D001420 ORTHO05D009292 2.8e-57 225.7 169 68.0
PSO478G4377 Papaver somniferum HOM05D001420 ORTHO05D009292 6.3e-57 224.6 165 67.9
HanXRQChr17g0550091 Helianthus annuus HOM05D001420 ORTHO05D009292 1.1e-56 223.8 165 70.3
Sabra16G0211000 Salix brachista HOM05D001420 ORTHO05D009292 1.4e-56 223.4 252 54.8
ATR0561G272 Amborella trichopoda HOM05D001420 ORTHO05D009292 2.4e-56 222.6 168 65.5
Carub.0005s0529 Capsella rubella HOM05D001420 ORTHO05D009292 3.1e-56 222.2 180 62.2
SalBow4G1795 Salvia bowleyana HOM05D001420 ORTHO05D009292 4.1e-56 221.9 179 63.1
Haze_14955 Corylus avellana HOM05D001420 ORTHO05D009292 1.2e-55 220.3 139 81.3
RcHm_v2.0_Chr2g0175681 Rosa chinensis HOM05D001420 ORTHO05D009292 1.6e-55 219.9 138 84.1
Cfa007225 Carpinus fangiana HOM05D001420 ORTHO05D009292 4.5e-55 218.4 141 79.4
Lsat_1_v5_gn_0_26060 Lactuca sativa HOM05D001420 ORTHO05D009292 1.0e-54 217.2 166 65.1
PSO017G5378 Papaver somniferum HOM05D001420 ORTHO05D009292 1.1e-53 213.8 180 62.8
ClCG05G013550 Citrullus lanatus HOM05D001420 ORTHO05D009292 2.5e-53 212.6 166 67.5
Atru.chr6.2574 Acer truncatum HOM05D001420 ORTHO05D009292 1.2e-52 210.3 144 73.6
CDE05G2056 Ceratophyllum demersum HOM05D001420 ORTHO05D009292 2.7e-52 209.1 172 62.2
ECA246G1005 Erigeron canadensis HOM05D001420 ORTHO05D002488 3.6e-52 208.8 152 67.1
Phvul.001G093200 Phaseolus vulgaris HOM05D001420 ORTHO05D009292 3.6e-52 208.8 179 61.5
CsaV3_3G026980 Cucumis sativus L. HOM05D001420 ORTHO05D009292 1.0e-51 207.2 167 66.5
SalBow4G0299 Salvia bowleyana HOM05D001420 ORTHO05D009292 1.4e-51 206.8 210 54.3
Sed0020252 Sechium edule HOM05D001420 ORTHO05D009292 1.4e-51 206.8 168 64.3
MBI11_g05328_MAGBIO Magnolia biondii HOM05D001420 ORTHO05D002488 7.5e-50 201.1 150 70.7
Ciclev10017089m.g Citrus clementina HOM05D001420 ORTHO05D009292 4.8e-49 198.4 140 72.1
Os11g0488600 Oryza sativa ssp. japonica HOM05D001420 ORTHO05D009292 4.1e-48 195.3 178 59.6
Peaxi162Scf00700g00030 Petunia axillaris HOM05D001420 ORTHO05D009292 4.1e-48 195.3 140 67.9
SEGI_21368 Sequoiadendron giganteum HOM05D001420 ORTHO05D009292 4.1e-48 195.3 168 57.1
Gohir.D09G037000 Gossypium hirsutum HOM05D001420 ORTHO05D009292 1.6e-47 193.4 135 70.4
Dinv33335 Davidia involucrata HOM05D001420 ORTHO05D009292 1.7e-46 189.9 117 78.6
Zm00001eb112760 Zea mays HOM05D001420 ORTHO05D009292 7.2e-45 184.5 201 50.7
MELO3C014890.2 Cucumis melo HOM05D001420 ORTHO05D009292 1.4e-43 180.3 143 66.4
MD16G1254400 Malus domestica HOM05D001420 ORTHO05D009292 4.4e-42 175.3 120 76.7
Pp3c1_27230 Physcomitrium patens HOM05D001420 ORTHO05D009292 4.9e-41 171.8 168 51.8
AagrBONN_evm.TU.Sc2ySwM_228.3079 Anthoceros agrestis HOM05D001420 ORTHO05D009292 6.3e-41 171.4 171 49.7
Lj7C610G7 Lonicera japonica HOM05D001420 ORTHO05D009292 2.4e-40 169.5 120 69.2
Pp3c14_4200 Physcomitrium patens HOM05D001420 ORTHO05D009292 7.8e-39 164.5 168 47.6
Ah.03g147520 Amaranthus hybridus HOM05D001420 ORTHO05D009292 4.7e-36 155.2 139 61.9
SMO119G0238 Selaginella moellendorffii HOM05D001420 ORTHO05D009292 6.1e-36 154.8 137 56.2
CBR_g762 Chara braunii HOM05D001420 ORTHO05D009292 2.7e-31 139.4 175 42.3
CDE05G0537 Ceratophyllum demersum HOM05D001420 ORTHO05D009292 1.1e-29 134.0 112 58.0
DCAR_021795 Daucus carota HOM05D001420 ORTHO05D009292 3.5e-23 112.5 88 63.6
FAN02G0503 Fragaria x ananassa HOM05D001420 ORTHO05D009292 3.0e-22 109.4 70 84.3
CiPaw.03G055800 Carya illinoinensis HOM05D001420 ORTHO05D002488 8.9e-19 97.8 59 83.1
Hund12739 Selenicereus undatus HOM05D001420 ORTHO05D009292 1.1e-11 74.3 48 81.2
Nitab4.5_0000525g0030 Nicotiana tabacum HOM05D001420 ORTHO05D009292 1.4e-11 73.9 42 78.6
Cre01.g049050 Chlamydomonas reinhardtii HOM05D001420 ORTHO05D009292 2.2e-09 66.6 153 26.8
DCAR_021794 Daucus carota HOM05D001420 ORTHO05D009292 3.0e-06 56.2 38 73.7
Medtr1g051110 Medicago truncatula HOM05D001420 ORTHO05D009292 5.1e-06 55.5 75 46.7


User provided reference genes

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