Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0174511 Rosa chinensis HOM05D000664 ORTHO05D035854 3.6e-38 161.0 75 100.0
RcHm_v2.0_Chr2g0174531 Rosa chinensis HOM05D000664 ORTHO05D000491 6.5e-16 87.0 50 84.0
RcHm_v2.0_Chr2g0174541 Rosa chinensis HOM05D000031 ORTHO05D035854 3.2e-15 84.7 71 59.2
FvH4_3g43790 Fragaria vesca HOM05D000664 ORTHO05D000491 4.2e-15 84.3 50 80.0
FvH4_6g52861 Fragaria vesca HOM05D000664 ORTHO05D000491 4.2e-15 84.3 50 80.0
FvH4_6g52931 Fragaria vesca HOM05D000664 ORTHO05D000491 4.2e-15 84.3 69 66.7
FAN14G3826 Fragaria x ananassa HOM05D000664 ORTHO05D000491 4.2e-15 84.3 50 80.0
FAN21G1670 Fragaria x ananassa HOM05D000664 ORTHO05D000491 4.2e-15 84.3 50 80.0
FAN02G4533 Fragaria x ananassa HOM05D000664 ORTHO05D035854 5.5e-15 84.0 68 64.7
FvH4_6g52830 Fragaria vesca HOM05D000664 ORTHO05D000491 7.2e-15 83.6 50 80.0
FAN11G3889 Fragaria x ananassa HOM05D000038 ORTHO05D000143 1.2e-14 82.8 50 78.0
FAN05G0730 Fragaria x ananassa HOM05D000664 ORTHO05D000491 3.6e-14 81.3 50 78.0
FAN05G4782 Fragaria x ananassa HOM05D000664 ORTHO05D000491 4.7e-14 80.9 50 80.0
RcHm_v2.0_Chr2g0174451 Rosa chinensis HOM05D000664 ORTHO05D000491 4.7e-14 80.9 50 78.0
FAN05G1881 Fragaria x ananassa HOM05D000664 ORTHO05D000491 8.0e-14 80.1 50 78.0
FvH4_6g52080 Fragaria vesca HOM05D000664 ORTHO05D000491 1.4e-13 79.3 50 78.0
FvH4_6g52942 Fragaria vesca HOM05D000664 ORTHO05D000491 1.4e-13 79.3 50 78.0
FAN14G3989 Fragaria x ananassa HOM05D000664 ORTHO05D000491 1.8e-13 79.0 66 65.2
FAN14G3142 Fragaria x ananassa HOM05D000664 ORTHO05D000491 6.8e-13 77.0 69 60.9
FAN09G0982 Fragaria x ananassa HOM05D000664 ORTHO05D000491 2.6e-12 75.1 50 74.0
FAN14G3303 Fragaria x ananassa HOM05D000664 ORTHO05D000491 2.6e-12 75.1 50 74.0
FAN14G1625 Fragaria x ananassa HOM05D000664 ORTHO05D000491 3.4e-12 74.7 62 59.7
FAN14G2391 Fragaria x ananassa HOM05D005860 ORTHO05D006977 3.4e-12 74.7 62 59.7
FvH4_6g53072 Fragaria vesca HOM05D000664 ORTHO05D000491 4.4e-12 74.3 62 62.9
FAN09G2634 Fragaria x ananassa HOM05D000664 ORTHO05D000491 5.7e-12 73.9 50 74.0
FAN09G2913 Fragaria x ananassa HOM05D000664 ORTHO05D000491 5.7e-12 73.9 62 58.1
FAN05G0407 Fragaria x ananassa HOM05D000664 ORTHO05D000491 2.8e-11 71.6 56 67.9
FvH4_6g53021 Fragaria vesca HOM05D000664 ORTHO05D000491 1.8e-10 68.9 70 54.3
FAN05G0017 Fragaria x ananassa HOM05D000664 ORTHO05D000491 2.4e-10 68.6 50 68.0
FvH4_6g52941 Fragaria vesca HOM05D000664 ORTHO05D000491 3.1e-10 68.2 43 74.4
FvH4_6g52062 Fragaria vesca HOM05D000664 ORTHO05D000491 1.2e-09 66.2 52 67.3
RcHm_v2.0_Chr4g0396041 Rosa chinensis HOM05D000664 ORTHO05D000491 1.2e-09 66.2 40 82.5
FAN09G3023 Fragaria x ananassa HOM05D000664 ORTHO05D000491 5.9e-09 63.9 42 71.4
RcHm_v2.0_Chr2g0174881 Rosa chinensis HOM05D000664 ORTHO05D000491 5.9e-09 63.9 63 57.1
RcHm_v2.0_Chr2g0174951 Rosa chinensis HOM05D000664 ORTHO05D000491 5.9e-09 63.9 63 57.1
FvH4_6g53001 Fragaria vesca HOM05D000664 ORTHO05D000491 1.0e-08 63.2 61 52.5
QL11p009388 Quercus lobata HOM05D000664 ORTHO05D000491 1.7e-08 62.4 35 77.1
RcHm_v2.0_Chr4g0388641 Rosa chinensis HOM05D000664 ORTHO05D000491 2.2e-08 62.0 42 69.0
Ciclev10006870m.g Citrus clementina HOM05D000664 ORTHO05D000491 2.9e-08 61.6 51 60.8
FvH4_6g53620 Fragaria vesca HOM05D000664 ORTHO05D000491 2.9e-08 61.6 63 52.4
FAN14G3348 Fragaria x ananassa HOM05D000664 ORTHO05D000491 2.9e-08 61.6 70 52.9
RcHm_v2.0_Chr4g0387951 Rosa chinensis HOM05D000664 ORTHO05D000491 5.0e-08 60.8 42 64.3
FAN02G0955 Fragaria x ananassa HOM05D000664 ORTHO05D000491 8.5e-08 60.1 63 54.0
FvH4_6g53610 Fragaria vesca HOM05D000664 ORTHO05D000491 1.1e-07 59.7 51 60.8
FAN14G0409 Fragaria x ananassa HOM05D000664 ORTHO05D000491 1.1e-07 59.7 64 53.1
RcHm_v2.0_Chr6g0264241 Rosa chinensis HOM05D000664 ORTHO05D000491 1.1e-07 59.7 33 81.8
FvH4_2g35920 Fragaria vesca HOM05D000664 ORTHO05D000491 1.5e-07 59.3 34 76.5
FAN01G2752 Fragaria x ananassa HOM05D008398 ORTHO05D005682 1.9e-07 58.9 35 80.0
FAN03G3290 Fragaria x ananassa HOM05D005400 ORTHO05D006668 1.9e-07 58.9 35 80.0
FAN06G1253 Fragaria x ananassa HOM05D008398 ORTHO05D035236 1.9e-07 58.9 35 80.0
FAN14G4417 Fragaria x ananassa HOM05D000664 ORTHO05D000491 1.9e-07 58.9 40 70.0
FvH4_2g35950 Fragaria vesca HOM05D000664 ORTHO05D000491 3.2e-07 58.2 34 76.5
RcHm_v2.0_Chr5g0041051 Rosa chinensis HOM05D000664 ORTHO05D000491 3.2e-07 58.2 35 74.3
FvH4_2g35930 Fragaria vesca HOM05D000664 ORTHO05D000491 5.5e-07 57.4 34 73.5
FvH4_2g35940 Fragaria vesca HOM05D000664 ORTHO05D000491 5.5e-07 57.4 32 78.1
FAN27G2908 Fragaria x ananassa HOM05D000664 ORTHO05D000491 5.5e-07 57.4 34 73.5
Sabra01G0178200 Salix brachista HOM05D000664 ORTHO05D000491 5.5e-07 57.4 35 71.4
Rhsim04G0064600 Rhododendron simsii HOM05D000664 ORTHO05D000491 7.2e-07 57.0 44 63.6
Rhsim07G0025700 Rhododendron simsii HOM05D000664 ORTHO05D000491 7.2e-07 57.0 35 74.3
Haze_19047 Corylus avellana HOM05D000664 ORTHO05D000491 9.4e-07 56.6 57 47.4
RcHm_v2.0_Chr4g0388001 Rosa chinensis HOM05D000664 ORTHO05D000491 9.4e-07 56.6 53 54.7
Cfa020730 Carpinus fangiana HOM05D000664 ORTHO05D000491 1.2e-06 56.2 52 50.0
FvH4_7g16534 Fragaria vesca HOM05D008398 ORTHO05D046322 1.2e-06 56.2 56 57.1
FAN27G0857 Fragaria x ananassa HOM05D000664 ORTHO05D000491 1.2e-06 56.2 28 89.3
RcHm_v2.0_Chr4g0444981 Rosa chinensis HOM05D000664 ORTHO05D000491 1.2e-06 56.2 35 71.4
Sabra05G0040400 Salix brachista HOM05D000664 ORTHO05D000491 1.2e-06 56.2 47 57.4
FvH4_4g06350 Fragaria vesca HOM05D000664 ORTHO05D000491 1.6e-06 55.8 43 58.1
FvH4_6g52610 Fragaria vesca HOM05D000664 ORTHO05D000491 1.6e-06 55.8 64 50.0
FAN06G0523 Fragaria x ananassa HOM05D008398 ORTHO05D005682 2.1e-06 55.5 56 57.1
FAN06G2795 Fragaria x ananassa HOM05D008398 ORTHO05D046322 2.1e-06 55.5 56 57.1
FAN06G3627 Fragaria x ananassa HOM05D008398 ORTHO05D005682 2.1e-06 55.5 56 57.1
FAN10G0863 Fragaria x ananassa HOM05D008398 ORTHO05D005682 2.1e-06 55.5 35 77.1
FAN12G0986 Fragaria x ananassa HOM05D000664 ORTHO05D000491 2.1e-06 55.5 38 65.8
Rhsim03G0162000 Rhododendron simsii HOM05D000664 ORTHO05D000491 2.1e-06 55.5 56 46.4
Rhsim04G0064800 Rhododendron simsii HOM05D000664 ORTHO05D000491 2.1e-06 55.5 35 74.3
COL.COLO4_38550 Corchorus olitorius HOM05D000664 ORTHO05D000491 2.7e-06 55.1 39 61.5
FvH4_4g06960 Fragaria vesca HOM05D000664 ORTHO05D000491 2.7e-06 55.1 57 49.1
FAN12G3310 Fragaria x ananassa HOM05D000664 ORTHO05D000491 2.7e-06 55.1 57 49.1
Rhsim01G0013800 Rhododendron simsii HOM05D000664 ORTHO05D000491 2.7e-06 55.1 49 55.1
Rhsim01G0016900 Rhododendron simsii HOM05D000664 ORTHO05D000491 2.7e-06 55.1 49 57.1
Rhsim01G0018000 Rhododendron simsii HOM05D000664 ORTHO05D000491 2.7e-06 55.1 49 57.1
FAN09G3069 Fragaria x ananassa HOM05D000664 ORTHO05D000491 3.6e-06 54.7 35 68.6
RcHm_v2.0_Chr4g0388051 Rosa chinensis HOM05D000664 ORTHO05D000491 3.6e-06 54.7 35 71.4
Lj3A385T7 Lonicera japonica HOM05D000664 ORTHO05D000491 4.7e-06 54.3 53 52.8
Manes.14G038100 Manihot esculenta HOM05D000664 ORTHO05D000491 4.7e-06 54.3 35 68.6
Duzib177G0294 Durio zibethinus HOM05D000664 ORTHO05D000491 6.1e-06 53.9 46 54.3
FvH4_3g32490 Fragaria vesca HOM05D000664 ORTHO05D000491 6.1e-06 53.9 60 46.7
FvH4_4g06370 Fragaria vesca HOM05D000664 ORTHO05D000491 6.1e-06 53.9 40 65.0
FvH4_7g30481 Fragaria vesca HOM05D008398 ORTHO05D029520 6.1e-06 53.9 35 71.4
FAN11G0439 Fragaria x ananassa HOM05D000664 ORTHO05D000491 6.1e-06 53.9 60 46.7
FAN12G1944 Fragaria x ananassa HOM05D000664 ORTHO05D000491 6.1e-06 53.9 40 65.0
FAN17G0010 Fragaria x ananassa HOM05D000664 ORTHO05D000491 6.1e-06 53.9 40 65.0
FAN22G1828 Fragaria x ananassa HOM05D000664 ORTHO05D000491 6.1e-06 53.9 40 65.0
Hma1.2p1_0432F.1_g152020 Hydrangea macrophylla HOM05D000664 ORTHO05D000491 6.1e-06 53.9 60 53.3
Rhsim01G0013400 Rhododendron simsii HOM05D000664 ORTHO05D000491 6.1e-06 53.9 49 55.1
RcHm_v2.0_Chr4g0399001 Rosa chinensis HOM05D000664 ORTHO05D000491 6.1e-06 53.9 39 64.1
Duzib106G0932 Durio zibethinus HOM05D000664 ORTHO05D000491 8.0e-06 53.5 35 65.7
Potri.005G043500 Populus trichocarpa HOM05D000664 ORTHO05D000491 8.0e-06 53.5 35 68.6


User provided reference genes

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