Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0174071 Rosa chinensis HOM05D006998 ORTHO05D008733 8.1e-73 276.9 137 100.0
FAN14G5586 Fragaria x ananassa HOM05D006998 ORTHO05D008733 1.3e-67 259.6 137 94.2
MD09G1018100 Malus domestica HOM05D006998 ORTHO05D008733 5.3e-64 247.7 137 88.3
QL02p001451 Quercus lobata HOM05D006998 ORTHO05D008733 2.4e-56 222.2 136 80.1
CiPaw.13G047700 Carya illinoinensis HOM05D006998 ORTHO05D008733 5.3e-56 221.1 137 78.8
Potri.001G336600 Populus trichocarpa HOM05D006998 ORTHO05D008733 9.0e-56 220.3 137 75.9
Sed0003364 Sechium edule HOM05D006998 ORTHO05D008733 1.2e-55 219.9 137 75.9
Sabra16G0217400 Salix brachista HOM05D006998 ORTHO05D008733 1.5e-55 219.5 137 75.9
MELO3C014841.2 Cucumis melo HOM05D006998 ORTHO05D008733 2.0e-55 219.2 137 75.9
FAN05G2331 Fragaria x ananassa HOM05D006998 ORTHO05D008733 7.6e-55 217.2 123 89.4
Ciclev10017134m.g Citrus clementina HOM05D006998 ORTHO05D008733 1.7e-54 216.1 137 74.5
Manes.15G155800 Manihot esculenta HOM05D006998 ORTHO05D008733 1.9e-53 212.6 137 73.7
GSVIVG01003966001 Vitis vinifera HOM05D006998 ORTHO05D008733 3.2e-53 211.8 137 76.6
Solyc02g093730.4 Solanum lycopersicum HOM05D006998 ORTHO05D008733 7.1e-53 210.7 137 72.3
Aqoxy1G01464 Aquilegia oxysepala HOM05D006998 ORTHO05D008733 1.6e-52 209.5 137 73.0
Atru.chr6.2476 Acer truncatum HOM05D006998 ORTHO05D008733 2.7e-52 208.8 137 73.7
Cpa.g.sc130.46 Carica papaya HOM05D006998 ORTHO05D008733 2.7e-52 208.8 137 73.0
PGSC0003DMG400012647 Solanum tuberosum HOM05D006998 ORTHO05D008733 4.6e-52 208.0 137 71.5
TAR371G1002 Trochodendron aralioides HOM05D006998 ORTHO05D008733 6.0e-52 207.6 137 71.5
Actinidia18425 Actinidia chinensis HOM05D006998 ORTHO05D008733 1.3e-51 206.5 137 70.1
Glyma.08G318800 Glycine max HOM05D006998 ORTHO05D008733 3.0e-51 205.3 118 84.7
COL.COLO4_29269 Corchorus olitorius HOM05D006998 ORTHO05D008733 6.7e-51 204.1 137 72.3
CANSAT64G0830 Cannabis sativa HOM05D006998 ORTHO05D008733 8.7e-51 203.8 129 74.4
Ca_14748_v3 Cicer arietinum L. HOM05D006998 ORTHO05D008733 8.7e-51 203.8 132 78.0
TWI56G1021 Tripterygium wilfordii HOM05D006998 ORTHO05D008733 1.1e-50 203.4 137 73.0
TPR.G33763 Trifolium pratense HOM05D006998 ORTHO05D008733 1.5e-50 203.0 136 75.7
vmacro18311 Vaccinium macrocarpon HOM05D006998 ORTHO05D008733 1.5e-50 203.0 146 67.1
Zm00001eb144320 Zea mays HOM05D006998 ORTHO05D008733 1.9e-50 202.6 136 73.5
MSTRG.3117 Avicennia marina HOM05D006998 ORTHO05D008733 3.3e-50 201.8 130 73.1
Lj6g0003593 Lotus japonicus HOM05D006998 ORTHO05D008733 4.3e-50 201.4 132 76.5
Phvul.006G045900 Phaseolus vulgaris HOM05D006998 ORTHO05D008733 9.7e-50 200.3 132 75.8
Eucgr.I01699 Eucalyptus grandis HOM05D006998 ORTHO05D008733 1.3e-49 199.9 137 70.1
ECA232G0345 Erigeron canadensis HOM05D006998 ORTHO05D008733 1.6e-49 199.5 137 73.0
Gohir.D07G232600 Gossypium hirsutum HOM05D006998 ORTHO05D008733 2.2e-49 199.1 136 69.9
Gorai.001G267900 Gossypium raimondii HOM05D006998 ORTHO05D008733 2.2e-49 199.1 136 69.9
Lalb_Chr20g0116091 Lupinus albus HOM05D006998 ORTHO05D008733 2.2e-49 199.1 137 75.2
TPR.G39742 Trifolium pratense HOM05D006998 ORTHO05D008733 2.2e-49 199.1 130 76.2
Thecc.04G025300 Theobroma cacao HOM05D006998 ORTHO05D008733 2.8e-49 198.7 134 71.6
Duzib147G0953 Durio zibethinus HOM05D006998 ORTHO05D008733 3.7e-49 198.4 134 71.6
arahy.Tifrunner.gnm1.ann1.W3WD4H Arachis hypogaea HOM05D006998 ORTHO05D008733 6.3e-49 197.6 132 75.0
MBI06_g05240_MAGBIO Magnolia biondii HOM05D006998 ORTHO05D008733 6.3e-49 197.6 138 70.3
Gohir.A07G225400 Gossypium hirsutum HOM05D006998 ORTHO05D008733 8.2e-49 197.2 136 69.9
Medtr3g052740 Medicago truncatula HOM05D006998 ORTHO05D008733 1.1e-48 196.8 137 74.5
PSO782G5351 Papaver somniferum HOM05D006998 ORTHO05D008733 1.4e-48 196.4 140 70.0
Lsat_1_v5_gn_4_184841 Lactuca sativa HOM05D006998 ORTHO05D008733 1.8e-48 196.1 122 78.7
arahy.Tifrunner.gnm1.ann1.24IP75 Arachis hypogaea HOM05D006998 ORTHO05D008733 2.4e-48 195.7 132 75.0
SalBow2G2409 Salvia bowleyana HOM05D006998 ORTHO05D008733 2.4e-48 195.7 134 70.9
AUR62015328 Chenopodium quinoa HOM05D006998 ORTHO05D008733 3.1e-48 195.3 136 72.1
EL10Ac3g06878 Beta vulgaris HOM05D006998 ORTHO05D008733 4.1e-48 194.9 132 71.2
Os02g0197800 Oryza sativa ssp. japonica HOM05D006998 ORTHO05D008733 5.3e-48 194.5 133 74.4
HanXRQChr09g0255661 Helianthus annuus HOM05D006998 ORTHO05D008733 6.9e-48 194.1 138 70.3
SGA_v2.0_scaffold135G34933 Striga asiatica HOM05D006998 ORTHO05D008733 6.9e-48 194.1 134 69.4
Cc07_g00360 Coffea canephora HOM05D006998 ORTHO05D008733 2.0e-47 192.6 137 65.7
Ah.13g075640 Amaranthus hybridus HOM05D000240 ORTHO05D001153 4.5e-47 191.4 135 70.4
CDE04G0536 Ceratophyllum demersum HOM05D006998 ORTHO05D008733 3.8e-46 188.3 137 69.3
Sc03g0006900 Simmondsia chinensis HOM05D006998 ORTHO05D008733 3.8e-46 188.3 135 68.1
ClCG05G013170 Citrullus lanatus HOM05D006998 ORTHO05D008733 5.0e-46 188.0 107 83.2
CsaV3_3G027380 Cucumis sativus L. HOM05D006998 ORTHO05D008733 6.5e-46 187.6 107 83.2
Carub.0005s0564 Capsella rubella HOM05D006998 ORTHO05D008733 1.9e-45 186.0 137 65.7
Migut.H00050 Erythranthe guttata HOM05D006998 ORTHO05D008733 1.9e-45 186.0 182 53.8
BcaC06g31012 Brassica carinata HOM05D006998 ORTHO05D008733 3.2e-45 185.3 136 66.2
Nitab4.5_0000040g0550 Nicotiana tabacum HOM05D006998 ORTHO05D008733 3.2e-45 185.3 107 80.4
Peaxi162Scf00080g01715 Petunia axillaris HOM05D006998 ORTHO05D008733 4.2e-45 184.9 107 79.4
ATR1089G022 Amborella trichopoda HOM05D006998 ORTHO05D008733 5.5e-45 184.5 126 68.3
Nitab4.5_0005414g0020 Nicotiana tabacum HOM05D006998 ORTHO05D008733 5.5e-45 184.5 107 78.5
Sc03g0007000 Simmondsia chinensis HOM05D006998 ORTHO05D008733 5.5e-45 184.5 135 67.4
THA.LOC104823962 Tarenaya hassleriana HOM05D006998 ORTHO05D008733 5.5e-45 184.5 139 65.5
THA.LOC104823963 Tarenaya hassleriana HOM05D006998 ORTHO05D008733 5.5e-45 184.5 139 65.5
A02p35400 Brassica napus HOM05D006998 ORTHO05D008733 9.4e-45 183.7 139 65.5
AL5G16660 Arabidopsis lyrata HOM05D006998 ORTHO05D008733 1.6e-44 183.0 136 64.7
A06p41260 Brassica napus HOM05D006998 ORTHO05D008733 1.6e-44 183.0 133 68.4
BraA06t27050Z Brassica rapa HOM05D006998 ORTHO05D008733 1.6e-44 183.0 133 68.4
CAN.G473.52 Capsicum annuum HOM05D006998 ORTHO05D008733 1.6e-44 183.0 107 79.4
C02p54110 Brassica napus HOM05D006998 ORTHO05D008733 3.6e-44 181.8 139 64.7
BolC2t11473H Brassica oleracea HOM05D006998 ORTHO05D008733 3.6e-44 181.8 139 64.7
BraA02t08541Z Brassica rapa HOM05D006998 ORTHO05D008733 4.6e-44 181.4 139 64.7
MBI06_g43854_MAGBIO Magnolia biondii HOM05D006998 ORTHO05D008733 7.9e-44 180.6 107 79.4
HPP92_007225 Vanilla planifolia HOM05D006998 ORTHO05D008733 7.9e-44 180.6 122 75.4
C07p36390 Brassica napus HOM05D006998 ORTHO05D008733 2.3e-43 179.1 139 63.3
PSO063G6009 Papaver somniferum HOM05D006998 ORTHO05D008733 3.9e-43 178.3 174 56.3
CDE07G0016 Ceratophyllum demersum HOM05D006998 ORTHO05D008733 1.1e-42 176.8 131 67.2
Sp2g16530 Schrenkiella parvula HOM05D006998 ORTHO05D008733 2.0e-42 176.0 135 65.2
Aa31LG2G5380 Aethionema arabicum HOM05D006998 ORTHO05D008733 4.3e-42 174.9 133 66.2
BolC7t44158H Brassica oleracea HOM05D006998 ORTHO05D008733 5.7e-42 174.5 139 60.4
SalBow2G0885 Salvia bowleyana HOM05D006998 ORTHO05D008733 5.7e-42 174.5 107 78.5
Os01g0904300 Oryza sativa ssp. japonica HOM05D006998 ORTHO05D008733 2.2e-41 172.6 113 73.5
Hund25052 Selenicereus undatus HOM05D006998 ORTHO05D008733 3.7e-41 171.8 133 63.9
arahy.Tifrunner.gnm1.ann1.5E1CRJ Arachis hypogaea HOM05D006998 ORTHO05D008733 1.5e-39 166.4 130 65.4
FAN02G1980 Fragaria x ananassa HOM05D006998 ORTHO05D008733 6.5e-38 161.0 88 93.2
AagrBONN_evm.TU.Sc2ySwM_362.2114 Anthoceros agrestis HOM05D006998 ORTHO05D008733 2.6e-31 139.0 107 60.7
VMungo0540G0081 Vigna mungo HOM05D006998 ORTHO05D008733 4.5e-31 138.3 93 74.2
Haze_03392 Corylus avellana HOM05D006998 ORTHO05D008733 1.7e-30 136.3 87 78.2
Haze_03396 Corylus avellana HOM05D006998 ORTHO05D008733 1.7e-30 136.3 87 78.2
SHI03852 Sapria himalayana HOM05D006998 ORTHO05D008733 5.0e-30 134.8 95 65.3
Cfa010438 Carpinus fangiana HOM05D006998 ORTHO05D008733 8.5e-30 134.0 87 77.0
SMO364G0335 Selaginella moellendorffii HOM05D006998 ORTHO05D008733 4.2e-29 131.7 101 60.4
Dinv25701 Davidia involucrata HOM05D006998 ORTHO05D008733 2.1e-28 129.4 72 83.3
DCAR_011285 Daucus carota HOM05D006998 ORTHO05D008733 1.4e-27 126.7 138 49.3
Pp3c11_10230 Physcomitrium patens HOM05D006998 ORTHO05D008733 5.2e-27 124.8 104 57.7
unitig_744.g24361 Utricularia gibba HOM05D002252 ORTHO05D002451 5.2e-27 124.8 94 63.8
Psat5g174840 Pisum sativum HOM05D006998 ORTHO05D008733 2.2e-25 119.4 82 74.4
COL.COLO4_29265 Corchorus olitorius HOM05D006998 ORTHO05D008733 3.7e-25 118.6 90 66.7
FvH4_6g52430 Fragaria vesca HOM05D006998 ORTHO05D008733 3.7e-25 118.6 66 90.9
PGR142G0400 Punica granatum HOM05D006998 ORTHO05D008733 4.1e-24 115.2 89 62.9
CARHR148660 Cardamine hirsuta HOM05D006998 ORTHO05D008733 1.6e-23 113.2 90 63.3
CBR_g38954 Chara braunii HOM05D006723 ORTHO05D008194 4.5e-23 111.7 98 54.1
Thhalv10005152m.g Eutrema salsugineum HOM05D006998 ORTHO05D008733 4.5e-23 111.7 83 66.3
AT3G27340 Arabidopsis thaliana HOM05D006998 ORTHO05D008733 5.9e-23 111.3 93 62.4
Prupe.3G299000 Prunus persica HOM05D000008 ORTHO05D000005 2.9e-22 109.0 66 78.8
Nn5g27086 Nelumbo nucifera HOM05D006998 ORTHO05D008733 4.2e-21 105.1 86 62.8
Sed0018714 Sechium edule HOM05D006998 ORTHO05D008733 1.5e-18 96.7 66 69.7
Dinv33390 Davidia involucrata HOM05D006998 ORTHO05D008733 4.4e-18 95.1 67 62.7
Sed0022519 Sechium edule HOM05D006998 ORTHO05D008733 7.5e-18 94.4 49 83.7
Medtr1252s0010 Medicago truncatula HOM05D006998 ORTHO05D008733 5.9e-15 84.7 81 54.3
BcaB01g01217 Brassica carinata HOM05D006998 ORTHO05D008733 1.2e-12 77.0 74 55.4
THA.LOC104801054 Tarenaya hassleriana HOM05D002401 ORTHO05D007109 2.1e-12 76.3 87 49.4
Cre09.g413300 Chlamydomonas reinhardtii HOM05D006998 ORTHO05D008733 2.3e-11 72.8 60 53.3
Mapoly0001s0548 Marchantia polymorpha HOM05D006998 ORTHO05D008733 3.7e-09 65.5 64 53.1


User provided reference genes

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