Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0173921 Rosa chinensis HOM05D004407 ORTHO05D005074 3.5e-135 485.0 242 100.0
FvH4_6g52330 Fragaria vesca HOM05D004407 ORTHO05D005074 3.9e-62 242.3 165 77.6
FAN05G1079 Fragaria x ananassa HOM05D004407 ORTHO05D005074 2.5e-56 223.0 166 71.7
MD09G1018600 Malus domestica HOM05D004407 ORTHO05D005074 3.4e-50 202.6 177 62.7
Prupe.3G298600 Prunus persica HOM05D004407 ORTHO05D005074 3.4e-50 202.6 175 64.0
MD17G1019100 Malus domestica HOM05D004407 ORTHO05D005074 5.1e-46 188.7 175 60.6
FAN14G0353 Fragaria x ananassa HOM05D004407 ORTHO05D005074 4.7e-39 165.6 166 59.0
Haze_14799 Corylus avellana HOM05D002760 ORTHO05D003169 2.0e-37 160.2 172 51.7
Nitab4.5_0001031g0160 Nicotiana tabacum HOM05D004407 ORTHO05D005074 4.4e-37 159.1 186 51.6
Solyc02g093710.1 Solanum lycopersicum HOM05D004407 ORTHO05D005074 7.4e-37 158.3 168 56.5
TWI36G1179 Tripterygium wilfordii HOM05D004407 ORTHO05D005074 1.3e-36 157.5 168 54.2
Ciclev10017684m.g Citrus clementina HOM05D004407 ORTHO05D005074 8.2e-36 154.8 178 48.9
QL02p073303 Quercus lobata HOM05D004407 ORTHO05D005074 8.2e-36 154.8 182 50.0
QL02p073308 Quercus lobata HOM05D004407 ORTHO05D005074 8.2e-36 154.8 182 50.0
Sopen02g038350 Solanum pennellii HOM05D004407 ORTHO05D005074 8.2e-36 154.8 168 56.0
PGR083G0262 Punica granatum HOM05D004407 ORTHO05D005074 1.4e-35 154.1 171 50.3
CiPaw.03G049400 Carya illinoinensis HOM05D004407 ORTHO05D005074 1.8e-35 153.7 175 54.3
CAN.G473.50 Capsicum annuum HOM05D004407 ORTHO05D005074 2.4e-35 153.3 171 51.5
Nitab4.5_0001863g0220 Nicotiana tabacum HOM05D004407 ORTHO05D005074 2.4e-35 153.3 183 50.3
Nn4g22470 Nelumbo nucifera HOM05D004407 ORTHO05D005074 3.5e-34 149.4 172 50.6
CSS0009144 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 2.2e-33 146.7 186 46.2
PGSC0003DMG400012626 Solanum tuberosum HOM05D004407 ORTHO05D005074 8.5e-33 144.8 169 53.3
Gorai.012G091100 Gossypium raimondii HOM05D004407 ORTHO05D005074 1.9e-32 143.7 178 47.2
Actinidia05950 Actinidia chinensis HOM05D004407 ORTHO05D005074 2.5e-32 143.3 183 45.4
Gohir.D04G080420 Gossypium hirsutum HOM05D004407 ORTHO05D005074 3.2e-32 142.9 178 47.2
MBI11_g29154_MAGBIO Magnolia biondii HOM05D004407 ORTHO05D005074 9.4e-32 141.4 178 44.4
Thecc.04G026300 Theobroma cacao HOM05D004407 ORTHO05D005074 9.4e-32 141.4 187 46.5
Thecc.04G026400 Theobroma cacao HOM05D004407 ORTHO05D005074 1.2e-31 141.0 197 44.2
Cc07_g00320 Coffea canephora HOM05D004407 ORTHO05D005074 3.6e-31 139.4 193 45.1
Prupe.3G298500 Prunus persica HOM05D004407 ORTHO05D005074 3.6e-31 139.4 127 60.6
Cpa.g.sc130.51 Carica papaya HOM05D004407 ORTHO05D005074 4.7e-31 139.0 177 46.3
CANSAT64G2558 Cannabis sativa HOM05D004407 ORTHO05D005074 8.0e-31 138.3 183 48.1
TAR622G1038 Trochodendron aralioides HOM05D004407 ORTHO05D005074 1.0e-30 137.9 178 47.8
Duzib187G1586 Durio zibethinus HOM05D004407 ORTHO05D005074 1.8e-30 137.1 176 47.7
Manes.15G155400 Manihot esculenta HOM05D004407 ORTHO05D005074 1.8e-30 137.1 194 41.8
Aqoxy3G01382 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 3.0e-30 136.3 160 49.4
Nn3g16588 Nelumbo nucifera HOM05D004407 ORTHO05D005074 4.4e-29 132.5 166 42.8
Sed0027888 Sechium edule HOM05D004407 ORTHO05D005074 4.4e-29 132.5 160 46.2
Rhsim10G0012400 Rhododendron simsii HOM05D004407 ORTHO05D005074 5.7e-29 132.1 148 51.4
Eucgr.J02274 Eucalyptus grandis HOM05D004407 ORTHO05D005074 9.7e-29 131.3 179 46.9
Gohir.A09G032000 Gossypium hirsutum HOM05D004407 ORTHO05D005074 1.7e-28 130.6 182 42.9
Oeu054661.1 Olea europaea HOM05D004407 ORTHO05D005074 4.8e-28 129.0 168 47.6
Potri.001G336200 Populus trichocarpa HOM05D004407 ORTHO05D005074 4.8e-28 129.0 167 49.1
Rhsim10G0012300 Rhododendron simsii HOM05D004407 ORTHO05D005074 4.8e-28 129.0 115 57.4
THA.LOC104825308 Tarenaya hassleriana HOM05D004407 ORTHO05D005074 6.3e-28 128.6 175 46.3
PSO832G4071 Papaver somniferum HOM05D004407 ORTHO05D005074 8.2e-28 128.3 163 46.6
Gorai.006G037000 Gossypium raimondii HOM05D004407 ORTHO05D005074 1.4e-27 127.5 181 42.0
TAR625G1142 Trochodendron aralioides HOM05D004407 ORTHO05D005074 1.8e-27 127.1 110 59.1
Aa31LG2G5400 Aethionema arabicum HOM05D004407 ORTHO05D005074 3.1e-27 126.3 169 44.4
Duzib264G0535 Durio zibethinus HOM05D004407 ORTHO05D005074 5.3e-27 125.6 118 53.4
Sabra16G0217100 Salix brachista HOM05D004407 ORTHO05D005074 1.6e-26 124.0 169 47.3
Sc03g0006940 Simmondsia chinensis HOM05D004407 ORTHO05D005074 2.0e-26 123.6 178 42.7
Sc03g0006970 Simmondsia chinensis HOM05D004407 ORTHO05D005074 2.7e-26 123.2 178 42.7
THA.LOC104805351 Tarenaya hassleriana HOM05D004407 ORTHO05D005074 2.7e-26 123.2 109 56.0
Glyma.02G190900 Glycine max HOM05D004407 ORTHO05D005074 2.9e-25 119.8 169 43.8
Potri.001G338100 Populus trichocarpa HOM05D004407 ORTHO05D005074 3.8e-25 119.4 102 57.8
PSO017G7028 Papaver somniferum HOM05D004407 ORTHO05D005074 8.5e-25 118.2 164 43.3
CARHR213820 Cardamine hirsuta HOM05D004407 ORTHO05D005074 1.1e-24 117.9 115 55.7
DCAR_015072 Daucus carota HOM05D004407 ORTHO05D005074 1.5e-24 117.5 109 56.0
Carub.0007s3479 Capsella rubella HOM05D004407 ORTHO05D005074 4.2e-24 115.9 114 54.4
Thhalv10028148m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 5.5e-24 115.5 113 54.0
Sp7g01180 Schrenkiella parvula HOM05D004407 ORTHO05D005074 1.2e-23 114.4 107 57.0
Aqoxy4G01774 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 1.6e-23 114.0 119 48.7
Aqoxy5G03597 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 1.6e-23 114.0 119 48.7
Ah.06g182110 Amaranthus hybridus HOM05D004407 ORTHO05D005074 2.7e-23 113.2 201 36.8
PSO063G0264 Papaver somniferum HOM05D004407 ORTHO05D005074 2.7e-23 113.2 210 40.0
C04p47510 Brassica napus HOM05D004407 ORTHO05D005074 6.1e-23 112.1 113 52.2
TAR374G1728 Trochodendron aralioides HOM05D004407 ORTHO05D005074 8.0e-23 111.7 161 44.1
BraA04t17032Z Brassica rapa HOM05D004407 ORTHO05D005074 1.0e-22 111.3 114 51.8
PSO407G0367 Papaver somniferum HOM05D004407 ORTHO05D005074 1.0e-22 111.3 115 52.2
EL10Ac4g07679 Beta vulgaris HOM05D004407 ORTHO05D005074 1.8e-22 110.5 96 57.3
PGR083G1149 Punica granatum HOM05D004407 ORTHO05D005074 3.0e-22 109.8 111 49.5
A04p13730 Brassica napus HOM05D004407 ORTHO05D005074 4.0e-22 109.4 196 37.8
DCAR_015074 Daucus carota HOM05D004407 ORTHO05D005074 1.2e-21 107.8 101 55.4
Hma1.2p1_0279F.1_g112130 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 2.0e-21 107.1 87 60.9
BolC4t26352H Brassica oleracea HOM05D004407 ORTHO05D005074 2.6e-21 106.7 180 41.1
VMungo1383G1696 Vigna mungo HOM05D004407 ORTHO05D005074 3.4e-21 106.3 161 42.9
PGSC0003DMG400006921 Solanum tuberosum HOM05D004407 ORTHO05D005074 5.7e-21 105.5 105 50.5
GSVIVG01003970001 Vitis vinifera HOM05D004407 ORTHO05D005074 5.7e-21 105.5 77 58.4
Phvul.008G156900 Phaseolus vulgaris HOM05D004407 ORTHO05D005074 7.5e-21 105.1 115 52.2
PGR083G0848 Punica granatum HOM05D004407 ORTHO05D005074 1.7e-20 104.0 114 47.4
Medtr1g051195 Medicago truncatula HOM05D004407 ORTHO05D005074 2.2e-20 103.6 162 43.2
Sopen02g017070 Solanum pennellii HOM05D000413 ORTHO05D005074 2.8e-20 103.2 111 50.5
Ca_03872_v3 Cicer arietinum L. HOM05D004407 ORTHO05D005074 6.3e-20 102.1 163 43.6
Peaxi162Scf00420g00249 Petunia axillaris HOM05D004407 ORTHO05D005074 1.8e-19 100.5 126 51.6
CsaV3_5G026800 Cucumis sativus L. HOM05D004407 ORTHO05D005074 3.1e-19 99.8 161 38.5
Sabra16G0218800 Salix brachista HOM05D000111 ORTHO05D000134 3.1e-19 99.8 94 55.3
MSTRG.24058 Avicennia marina HOM05D004407 ORTHO05D005074 2.0e-18 97.1 122 50.0
Thhalv10028030m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 2.0e-18 97.1 156 38.5
Duzib187G1582 Durio zibethinus HOM05D004407 ORTHO05D005074 4.5e-18 95.9 215 35.8
CANSAT64G1834 Cannabis sativa HOM05D004407 ORTHO05D005074 7.7e-18 95.1 121 45.5
Psat0s1368g0080 Pisum sativum HOM05D004407 ORTHO05D005074 7.7e-18 95.1 171 42.7
TPR.G1105 Trifolium pratense HOM05D004407 ORTHO05D005074 1.7e-17 94.0 133 45.1
TPR.G1219 Trifolium pratense HOM05D004407 ORTHO05D005074 1.1e-16 91.3 133 44.4
ClCG09G019590 Citrullus lanatus HOM05D004407 ORTHO05D005074 1.5e-16 90.9 174 36.2
Gohir.A11G065600 Gossypium hirsutum HOM05D004407 ORTHO05D005074 2.5e-16 90.1 182 36.3
Sed0009704 Sechium edule HOM05D004407 ORTHO05D005074 3.2e-16 89.7 124 42.7
BcaB02g07933 Brassica carinata HOM05D004407 ORTHO05D005074 5.5e-16 89.0 173 39.9
COL.COLO4_29257 Corchorus olitorius HOM05D004407 ORTHO05D005074 7.2e-16 88.6 63 61.9
Hma1.2p1_0818F.1_g223510 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 1.2e-15 87.8 106 50.0
MELO3C021614.2 Cucumis melo HOM05D004407 ORTHO05D005074 1.6e-15 87.4 181 35.4
Hma1.2p1_0818F.1_g223550 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 1.6e-15 87.4 106 50.0
Hma1.2p1_1484F.1_g286410 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 2.7e-15 86.7 60 66.7
Hma1.2p1_1484F.1_g286420 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 3.6e-15 86.3 102 50.0
Aa31LG9G940 Aethionema arabicum HOM05D004407 ORTHO05D005074 4.7e-15 85.9 174 37.9
Migut.K01432 Erythranthe guttata HOM05D004407 ORTHO05D005074 4.7e-15 85.9 104 45.2
HanXRQChr09g0255761 Helianthus annuus HOM05D004407 ORTHO05D005074 6.1e-15 85.5 102 48.0
Gohir.A05G342300 Gossypium hirsutum HOM05D004407 ORTHO05D005074 8.0e-15 85.1 171 38.0
AT5G40690 Arabidopsis thaliana HOM05D004407 ORTHO05D005074 1.0e-14 84.7 107 43.9
Dinv25704 Davidia involucrata HOM05D004407 ORTHO05D005074 1.0e-14 84.7 169 38.5
Migut.H00046 Erythranthe guttata HOM05D004407 ORTHO05D005074 1.4e-14 84.3 106 48.1
Hma1.2p1_0818F.1_g223530 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 1.4e-14 84.3 95 49.5
Hma1.2p1_1484F.1_g286386 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 1.4e-14 84.3 95 49.5
Gohir.D11G069800 Gossypium hirsutum HOM05D004407 ORTHO05D005074 1.8e-14 84.0 184 35.9
Lsat_1_v5_gn_2_93521 Lactuca sativa HOM05D004407 ORTHO05D005074 1.8e-14 84.0 157 39.5
ECA238G3732 Erigeron canadensis HOM05D004407 ORTHO05D005074 2.3e-14 83.6 105 45.7
AL7G49050 Arabidopsis lyrata HOM05D004407 ORTHO05D005074 4.0e-14 82.8 115 43.5
Hma1.2p1_1484F.1_g286390 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 5.2e-14 82.4 106 48.1
Gorai.007G074900 Gossypium raimondii HOM05D004407 ORTHO05D005074 6.8e-14 82.0 190 34.7
Sed0005342 Sechium edule HOM05D004407 ORTHO05D005074 8.8e-14 81.6 181 34.3
Hma1.2p1_0818F.1_g223560 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 1.5e-13 80.9 95 48.4
ECA238G3518 Erigeron canadensis HOM05D004407 ORTHO05D005074 2.0e-13 80.5 142 39.4
BcaNung02831 Brassica carinata HOM05D004407 ORTHO05D005074 5.7e-13 79.0 98 48.0
A05p02470 Brassica napus HOM05D004407 ORTHO05D005074 5.7e-13 79.0 104 44.2
C04p02950 Brassica napus HOM05D004407 ORTHO05D005074 1.7e-12 77.4 114 43.0
BolC4t21935H Brassica oleracea HOM05D004407 ORTHO05D005074 1.7e-12 77.4 114 43.0
A05p02480 Brassica napus HOM05D004407 ORTHO05D005074 3.7e-12 76.3 113 40.7
C04p02920 Brassica napus HOM05D004407 ORTHO05D005074 3.7e-12 76.3 113 42.5
BolC4t21933H Brassica oleracea HOM05D004407 ORTHO05D005074 3.7e-12 76.3 113 42.5
BraA05t19241Z Brassica rapa HOM05D004407 ORTHO05D005074 3.7e-12 76.3 113 40.7
A05p02490 Brassica napus HOM05D004407 ORTHO05D005074 4.9e-12 75.9 113 38.9
BraA05t19242Z Brassica rapa HOM05D004407 ORTHO05D005074 4.9e-12 75.9 113 38.9
CARHR025870 Cardamine hirsuta HOM05D004407 ORTHO05D005074 4.9e-12 75.9 105 42.9
ECA232G1846 Erigeron canadensis HOM05D004407 ORTHO05D005074 4.9e-12 75.9 92 47.8
BcaC04g22350 Brassica carinata HOM05D004407 ORTHO05D005074 6.3e-12 75.5 60 53.3
C09p20260 Brassica napus HOM05D006758 ORTHO05D008326 6.3e-12 75.5 60 53.3
BolC9t54931H Brassica oleracea HOM05D006758 ORTHO05D008326 6.3e-12 75.5 60 53.3
BcaNung02832 Brassica carinata HOM05D004407 ORTHO05D005074 1.1e-11 74.7 104 43.3
C04p02940 Brassica napus HOM05D004407 ORTHO05D005074 1.1e-11 74.7 113 41.6
BolC4t21934H Brassica oleracea HOM05D004407 ORTHO05D005074 1.1e-11 74.7 113 41.6
SGA_v2.0_scaffold47G17536 Striga asiatica HOM05D004407 ORTHO05D005074 1.1e-11 74.7 161 34.2
BcaB07g31285 Brassica carinata HOM05D004407 ORTHO05D005074 1.4e-11 74.3 104 37.5
BraA05t19240Z Brassica rapa HOM05D004407 ORTHO05D005074 2.4e-11 73.6 104 42.3
BraA05t19239Z Brassica rapa HOM05D004407 ORTHO05D005074 5.4e-11 72.4 113 41.6
BcaNung02830 Brassica carinata HOM05D004407 ORTHO05D005074 7.0e-11 72.0 107 45.8
Thhalv10019315m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 7.0e-11 72.0 115 41.7
A05p02450 Brassica napus HOM05D004407 ORTHO05D005074 9.2e-11 71.6 114 42.1
A09p16650 Brassica napus HOM05D006758 ORTHO05D008326 2.0e-10 70.5 60 50.0
BraA09t37304Z Brassica rapa HOM05D006758 ORTHO05D008326 2.0e-10 70.5 60 50.0
AUR62020325 Chenopodium quinoa HOM05D004407 ORTHO05D005074 2.0e-10 70.5 126 38.1
SGA_v2.0_scaffold154G37145 Striga asiatica HOM05D002760 ORTHO05D003169 2.7e-10 70.1 45 66.7
HPP92_009916 Vanilla planifolia HOM05D004407 ORTHO05D005074 7.7e-10 68.6 67 46.3
HanXRQChr14g0451031 Helianthus annuus HOM05D004407 ORTHO05D005074 2.5e-08 63.5 118 36.4
CANSAT64G1789 Cannabis sativa HOM05D004407 ORTHO05D005074 7.3e-08 62.0 105 43.8
unitig_747.g21864 Utricularia gibba HOM05D004407 ORTHO05D005074 9.5e-08 61.6 163 35.6
Solyc02g067935.1 Solanum lycopersicum HOM05D004407 ORTHO05D005074 1.6e-07 60.8 48 56.2
HPP92_009915 Vanilla planifolia HOM05D004407 ORTHO05D005074 1.6e-07 60.8 61 42.6
SEGI_17639 Sequoiadendron giganteum HOM05D050174 ORTHO05D005074 2.1e-07 60.5 185 30.3
AT2G41730 Arabidopsis thaliana HOM05D004407 ORTHO05D005074 6.1e-07 58.9 98 38.8
AT5G24640 Arabidopsis thaliana HOM05D004407 ORTHO05D005074 1.4e-06 57.8 101 37.6
Sp4g23980 Schrenkiella parvula HOM05D004407 ORTHO05D005074 1.4e-06 57.8 103 36.9
Aqoxy5G03598 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 2.3e-06 57.0 88 42.0
AagrBONN_evm.TU.Sc2ySwM_228.3156 Anthoceros agrestis HOM05D018410 ORTHO05D021325 6.8e-06 55.5 66 37.9
AL4G40040 Arabidopsis lyrata HOM05D004407 ORTHO05D005074 8.9e-06 55.1 98 36.7


User provided reference genes

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