Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0173451 Rosa chinensis HOM05D007296 ORTHO05D009201 4.0e-77 291.6 170 100.0
FAN05G3275 Fragaria x ananassa HOM05D007296 ORTHO05D009201 6.8e-53 211.1 178 70.8
FAN14G0692 Fragaria x ananassa HOM05D007296 ORTHO05D009201 2.0e-52 209.5 178 67.4
FAN09G0682 Fragaria x ananassa HOM05D007296 ORTHO05D009201 2.4e-50 202.6 176 67.0
FAN02G1968 Fragaria x ananassa HOM05D007296 ORTHO05D009201 7.0e-50 201.1 176 65.3
FvH4_6g51980 Fragaria vesca HOM05D007296 ORTHO05D009201 1.9e-47 193.0 171 65.5
Prupe.3G295100 Prunus persica HOM05D007296 ORTHO05D009201 8.7e-16 87.8 127 41.7
Lj1g0014101 Lotus japonicus HOM05D007296 ORTHO05D009201 1.8e-13 80.1 119 41.2
CiPaw.03G046500 Carya illinoinensis HOM05D007296 ORTHO05D009201 2.6e-12 76.3 128 42.2
Cpa.g.sc130.72 Carica papaya HOM05D007296 ORTHO05D009201 9.9e-12 74.3 126 41.3
Psat3g172000 Pisum sativum HOM05D007296 ORTHO05D009201 2.9e-11 72.8 117 40.2
Lj4g0005296 Lotus japonicus HOM05D007296 ORTHO05D009201 4.9e-11 72.0 136 36.8
Atru.chr6.2441 Acer truncatum HOM05D007296 ORTHO05D009201 6.4e-11 71.6 71 50.7
Ca_06610_v3 Cicer arietinum L. HOM05D007296 ORTHO05D009201 8.4e-11 71.2 117 43.6
Ca_30727_v3 Cicer arietinum L. HOM05D007296 ORTHO05D009201 8.4e-11 71.2 117 43.6
Ciclev10017118m.g Citrus clementina HOM05D007296 ORTHO05D009201 1.4e-10 70.5 133 36.8
QL02p073829 Quercus lobata HOM05D007296 ORTHO05D009201 1.9e-10 70.1 117 38.5
CSS0008661 Camellia sinensis var. sinensis HOM05D007296 ORTHO05D009201 2.4e-10 69.7 120 40.8
Potri.001G342100 Populus trichocarpa HOM05D007296 ORTHO05D009201 3.2e-10 69.3 130 38.5
Glyma.16G068200 Glycine max HOM05D007296 ORTHO05D009201 4.2e-10 68.9 119 39.5
Lalb_Chr22g0360681 Lupinus albus HOM05D007296 ORTHO05D009201 4.2e-10 68.9 117 38.5
TPR.G1088 Trifolium pratense HOM05D007296 ORTHO05D009201 5.4e-10 68.6 117 40.2
Glyma.19G078800 Glycine max HOM05D007296 ORTHO05D009201 7.1e-10 68.2 125 40.0
Medtr7g033080 Medicago truncatula HOM05D007296 ORTHO05D009201 7.1e-10 68.2 72 51.4
Thecc.04G021100 Theobroma cacao HOM05D007296 ORTHO05D009201 9.3e-10 67.8 124 39.5
Haze_14767 Corylus avellana HOM05D007296 ORTHO05D009201 1.2e-09 67.4 130 36.9
Manes.15G152600 Manihot esculenta HOM05D007296 ORTHO05D009201 1.6e-09 67.0 134 36.6
CsaV3_5G026960 Cucumis sativus L. HOM05D007296 ORTHO05D009201 2.1e-09 66.6 145 34.5
Duzib187G0331 Durio zibethinus HOM05D007296 ORTHO05D009201 2.1e-09 66.6 118 35.6
Eucgr.I01721 Eucalyptus grandis HOM05D007296 ORTHO05D009201 2.7e-09 66.2 149 38.9
TWI56G0033 Tripterygium wilfordii HOM05D007296 ORTHO05D009201 2.7e-09 66.2 115 40.0
Cfa007330 Carpinus fangiana HOM05D007296 ORTHO05D009201 6.0e-09 65.1 130 35.4
Lsat_1_v5_gn_0_6101 Lactuca sativa HOM05D007296 ORTHO05D009201 1.0e-08 64.3 123 38.2
Glyma.19G051600 Glycine max HOM05D007296 ORTHO05D009201 1.3e-08 63.9 131 35.9
Phvul.008G151600 Phaseolus vulgaris HOM05D007296 ORTHO05D009201 1.3e-08 63.9 72 47.2
MELO3C021597.2 Cucumis melo HOM05D007296 ORTHO05D009201 1.8e-08 63.5 96 39.6
Carub.0006s1259 Capsella rubella HOM05D007296 ORTHO05D009201 2.3e-08 63.2 81 42.0
CiPaw.04G030100 Carya illinoinensis HOM05D007296 ORTHO05D009201 2.3e-08 63.2 122 34.4
DCAR_021738 Daucus carota HOM05D000631 ORTHO05D000524 2.3e-08 63.2 39 66.7
Dinv33417 Davidia involucrata HOM05D007296 ORTHO05D009201 2.3e-08 63.2 116 38.8
AL6G25130 Arabidopsis lyrata HOM05D007296 ORTHO05D009201 3.0e-08 62.8 81 40.7
BolC9t59112H Brassica oleracea HOM05D007296 ORTHO05D009201 3.0e-08 62.8 114 36.8
Sc16g0004380 Simmondsia chinensis HOM05D007296 ORTHO05D009201 3.0e-08 62.8 114 37.7
CARHR198900 Cardamine hirsuta HOM05D007296 ORTHO05D009201 3.9e-08 62.4 81 42.0
ClCG09G019420 Citrullus lanatus HOM05D007296 ORTHO05D009201 3.9e-08 62.4 141 33.3
AT5G14410 Arabidopsis thaliana HOM05D007296 ORTHO05D009201 6.7e-08 61.6 81 39.5
C09p62750 Brassica napus HOM05D007296 ORTHO05D009201 6.7e-08 61.6 114 36.0
SalBow1G6940 Salvia bowleyana HOM05D007296 ORTHO05D009201 6.7e-08 61.6 118 37.3
A10p24110 Brassica napus HOM05D007296 ORTHO05D009201 8.7e-08 61.2 74 45.9
BraA10t44476Z Brassica rapa HOM05D007296 ORTHO05D009201 8.7e-08 61.2 74 45.9
Nn3g16657 Nelumbo nucifera HOM05D007296 ORTHO05D009201 8.7e-08 61.2 122 36.9
Thhalv10014918m.g Eutrema salsugineum HOM05D007296 ORTHO05D009201 1.1e-07 60.8 81 39.5
Glyma.05G115500 Glycine max HOM05D007296 ORTHO05D009201 1.1e-07 60.8 131 34.4
Aa31LG11G15190 Aethionema arabicum HOM05D007296 ORTHO05D009201 1.5e-07 60.5 114 38.6
CAN.G473.34 Capsicum annuum HOM05D007296 ORTHO05D009201 1.5e-07 60.5 139 32.4
Sp6g29610 Schrenkiella parvula HOM05D007296 ORTHO05D009201 1.5e-07 60.5 81 39.5
PGSC0003DMG400012614 Solanum tuberosum HOM05D007296 ORTHO05D009201 1.5e-07 60.5 142 33.8
TAR371G0818 Trochodendron aralioides HOM05D007296 ORTHO05D009201 1.9e-07 60.1 121 38.8
VMungo1383G0878 Vigna mungo HOM05D007296 ORTHO05D009201 1.9e-07 60.1 118 38.1
ATR0199G042 Amborella trichopoda HOM05D007296 ORTHO05D009201 2.5e-07 59.7 126 39.7
Cc02_g32290 Coffea canephora HOM05D007296 ORTHO05D009201 3.3e-07 59.3 124 36.3
PGR142G0831 Punica granatum HOM05D007296 ORTHO05D009201 3.3e-07 59.3 138 34.8
BcaB08g36986 Brassica carinata HOM05D007296 ORTHO05D009201 5.6e-07 58.5 44 54.5
Prupe.5G162900 Prunus persica HOM05D007296 ORTHO05D009201 5.6e-07 58.5 134 38.1
Sed0024202 Sechium edule HOM05D007296 ORTHO05D009201 5.6e-07 58.5 133 32.3
Lsat_1_v5_gn_2_91081 Lactuca sativa HOM05D007296 ORTHO05D009201 7.4e-07 58.2 117 38.5
Hma1.2p1_0818F.1_g223340 Hydrangea macrophylla HOM05D007296 ORTHO05D009201 9.6e-07 57.8 115 35.7
Migut.H00030 Erythranthe guttata HOM05D007296 ORTHO05D009201 1.3e-06 57.4 134 31.3
MBI10_g42976_MAGBIO Magnolia biondii HOM05D007296 ORTHO05D009201 1.3e-06 57.4 118 37.3
Aqoxy7G03797 Aquilegia oxysepala HOM05D007296 ORTHO05D009201 2.8e-06 56.2 40 57.5
Ah.12g055220 Amaranthus hybridus HOM05D007296 ORTHO05D009201 3.7e-06 55.8 123 35.0
Phvul.004G061700 Phaseolus vulgaris HOM05D007296 ORTHO05D009201 3.7e-06 55.8 79 41.8
THA.LOC104821171 Tarenaya hassleriana HOM05D007296 ORTHO05D009201 3.7e-06 55.8 38 60.5
Aqoxy5G03689 Aquilegia oxysepala HOM05D007296 ORTHO05D009201 4.8e-06 55.5 94 37.2
ECA246G1504 Erigeron canadensis HOM05D007296 ORTHO05D009201 4.8e-06 55.5 117 35.0
DCAR_015066 Daucus carota HOM05D007296 ORTHO05D009201 6.2e-06 55.1 38 63.2
Gohir.A09G030400 Gossypium hirsutum HOM05D007296 ORTHO05D009201 6.2e-06 55.1 127 33.9
SGA_v2.0_scaffold135G34923 Striga asiatica HOM05D007296 ORTHO05D009201 6.2e-06 55.1 119 35.3
CiPaw.11G015200 Carya illinoinensis HOM05D007296 ORTHO05D009201 8.1e-06 54.7 113 34.5


User provided reference genes

Program Settings