Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0173321 Rosa chinensis HOM05D000421 ORTHO05D340797 2.3e-26 121.3 56 100.0
Eucgr.I01729 Eucalyptus grandis HOM05D000421 ORTHO05D000855 5.4e-07 57.0 30 83.3
AL5G16880 Arabidopsis lyrata HOM05D000421 ORTHO05D000855 9.2e-07 56.2 30 80.0
AT3G27470 Arabidopsis thaliana HOM05D000421 ORTHO05D000855 9.2e-07 56.2 30 80.0
BcaC06g30987 Brassica carinata HOM05D000421 ORTHO05D000855 9.2e-07 56.2 30 80.0
A06p41150 Brassica napus HOM05D000421 ORTHO05D000855 9.2e-07 56.2 30 80.0
BraA06t27037Z Brassica rapa HOM05D000421 ORTHO05D000855 9.2e-07 56.2 30 80.0
Thhalv10004352m.g Eutrema salsugineum HOM05D000421 ORTHO05D000855 9.2e-07 56.2 30 80.0
THA.LOC104805362 Tarenaya hassleriana HOM05D000421 ORTHO05D000855 9.2e-07 56.2 30 80.0
BcaC06g33816 Brassica carinata HOM05D000421 ORTHO05D000855 2.1e-06 55.1 26 88.5
BolC7t44171H Brassica oleracea HOM05D000421 ORTHO05D000855 2.1e-06 55.1 26 88.5
Ciclev10015612m.g Citrus clementina HOM05D000421 ORTHO05D000855 2.1e-06 55.1 25 96.0
Lj4g0022913 Lotus japonicus HOM05D000421 ORTHO05D000855 2.1e-06 55.1 30 73.3
MD09G1022800 Malus domestica HOM05D000421 ORTHO05D000855 2.1e-06 55.1 30 80.0
Sp2g16680 Schrenkiella parvula HOM05D000421 ORTHO05D000855 2.1e-06 55.1 30 76.7
Ah.15g092030 Amaranthus hybridus HOM05D000421 ORTHO05D000855 2.7e-06 54.7 30 73.3
Gohir.D10G086300 Gossypium hirsutum HOM05D000421 ORTHO05D000855 2.7e-06 54.7 30 80.0
Gorai.011G094500 Gossypium raimondii HOM05D000421 ORTHO05D000855 2.7e-06 54.7 30 80.0
Carub.0005s0588 Capsella rubella HOM05D000421 ORTHO05D000855 3.5e-06 54.3 30 80.0
Gohir.A10G102100 Gossypium hirsutum HOM05D000421 ORTHO05D000855 3.5e-06 54.3 27 85.2
Sabra17G0061700 Salix brachista HOM05D000421 ORTHO05D000855 3.5e-06 54.3 30 76.7
Manes.17G110900 Manihot esculenta HOM05D000421 ORTHO05D000855 4.6e-06 53.9 25 92.0
PGR102G1172 Punica granatum HOM05D000421 ORTHO05D000855 4.6e-06 53.9 30 80.0
arahy.Tifrunner.gnm1.ann1.ID5W0N Arachis hypogaea HOM05D000421 ORTHO05D000855 6.0e-06 53.5 23 100.0
arahy.Tifrunner.gnm1.ann1.JNNM64 Arachis hypogaea HOM05D000421 ORTHO05D000855 6.0e-06 53.5 23 100.0
arahy.Tifrunner.gnm1.ann1.RH1G9I Arachis hypogaea HOM05D000421 ORTHO05D000855 6.0e-06 53.5 23 100.0
Dinv14730 Davidia involucrata HOM05D000421 ORTHO05D000855 6.0e-06 53.5 23 100.0
Os02g0297600 Oryza sativa ssp. japonica HOM05D000421 ORTHO05D000855 6.0e-06 53.5 30 80.0
Peaxi162Scf00128g00314 Petunia axillaris HOM05D000421 ORTHO05D000855 6.0e-06 53.5 23 100.0
RcHm_v2.0_Chr2g0173331 Rosa chinensis HOM05D000421 ORTHO05D000855 6.0e-06 53.5 23 100.0
TWI12G0706 Tripterygium wilfordii HOM05D000421 ORTHO05D000855 6.0e-06 53.5 23 100.0
BcaC04g23901 Brassica carinata HOM05D000421 ORTHO05D000855 7.8e-06 53.1 23 95.7
C09p03640 Brassica napus HOM05D000421 ORTHO05D000855 7.8e-06 53.1 23 95.7
BolC9t53283H Brassica oleracea HOM05D000421 ORTHO05D000855 7.8e-06 53.1 23 95.7
Haze_12259 Corylus avellana HOM05D000421 ORTHO05D000855 7.8e-06 53.1 30 80.0
DCAR_007047 Daucus carota HOM05D000421 ORTHO05D000855 7.8e-06 53.1 23 95.7
Glyma.05G174800 Glycine max HOM05D000421 ORTHO05D000855 7.8e-06 53.1 23 95.7
HanXRQChr08g0208261 Helianthus annuus HOM05D000421 ORTHO05D000855 7.8e-06 53.1 30 80.0
Lj4g0026209 Lotus japonicus HOM05D000421 ORTHO05D000855 7.8e-06 53.1 23 95.7
Lalb_Chr08g0230911 Lupinus albus HOM05D000421 ORTHO05D000855 7.8e-06 53.1 23 95.7
Lalb_Chr11g0075501 Lupinus albus HOM05D000421 ORTHO05D000855 7.8e-06 53.1 23 95.7
Phvul.002G259900 Phaseolus vulgaris HOM05D000421 ORTHO05D000855 7.8e-06 53.1 23 95.7
Sc14g0008780 Simmondsia chinensis HOM05D003359 ORTHO05D004472 7.8e-06 53.1 23 95.7
TWI56G1067 Tripterygium wilfordii HOM05D000421 ORTHO05D000855 7.8e-06 53.1 23 95.7
VMungo0251G2697 Vigna mungo HOM05D000421 ORTHO05D000855 7.8e-06 53.1 23 95.7


User provided reference genes

Program Settings