Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0173101 Rosa chinensis HOM05D004963 ORTHO05D006638 0.0e+00 3855.1 1952 100.0
FvH4_6g51430 Fragaria vesca HOM05D004963 ORTHO05D006638 0.0e+00 3502.2 1951 90.5
Prupe.3G292000 Prunus persica HOM05D004963 ORTHO05D006638 0.0e+00 3079.7 1965 79.8
FAN14G4225 Fragaria x ananassa HOM05D004963 ORTHO05D006638 0.0e+00 3060.4 1943 81.3
MD17G1026700 Malus domestica HOM05D004963 ORTHO05D006638 0.0e+00 3031.1 1969 78.2
Cfa007367 Carpinus fangiana HOM05D004963 ORTHO05D006638 0.0e+00 2568.1 1964 67.2
CANSAT64G0570 Cannabis sativa HOM05D004963 ORTHO05D006638 0.0e+00 2547.3 1950 66.7
Dinv35107 Davidia involucrata HOM05D004963 ORTHO05D006638 0.0e+00 2544.6 1959 66.8
CiPaw.03G043900 Carya illinoinensis HOM05D004963 ORTHO05D006638 0.0e+00 2524.6 1963 66.7
GSVIVG01032403001 Vitis vinifera HOM05D004963 ORTHO05D006638 0.0e+00 2510.7 1957 65.7
TAR629G0020 Trochodendron aralioides HOM05D004963 ORTHO05D006638 0.0e+00 2499.2 1965 65.5
Haze_14742 Corylus avellana HOM05D004963 ORTHO05D006638 0.0e+00 2465.6 1988 65.0
Manes.17G112100 Manihot esculenta HOM05D004963 ORTHO05D006638 0.0e+00 2450.2 1959 64.4
TWI56G0249 Tripterygium wilfordii HOM05D004963 ORTHO05D006638 0.0e+00 2424.4 1959 63.1
Glyma.05G003500 Glycine max HOM05D004963 ORTHO05D006638 0.0e+00 2407.9 1958 63.2
Thecc.04G017500 Theobroma cacao HOM05D004963 ORTHO05D006638 0.0e+00 2397.1 1959 63.3
Lj2g0007459 Lotus japonicus HOM05D004963 ORTHO05D006638 0.0e+00 2394.4 1953 62.5
Potri.001G345100 Populus trichocarpa HOM05D004963 ORTHO05D006638 0.0e+00 2392.1 1962 63.1
TPR.G33247 Trifolium pratense HOM05D004963 ORTHO05D006638 0.0e+00 2389.8 1941 63.1
Psat1g054400 Pisum sativum HOM05D004963 ORTHO05D006638 0.0e+00 2380.5 1953 62.3
CSS0016229 Camellia sinensis var. sinensis HOM05D004963 ORTHO05D006638 0.0e+00 2379.0 2049 61.4
Medtr6g004840 Medicago truncatula HOM05D004963 ORTHO05D006638 0.0e+00 2375.9 1938 62.3
Ca_04160_v3 Cicer arietinum L. HOM05D004963 ORTHO05D006638 0.0e+00 2370.5 1939 62.6
Lju41A42T102 Lonicera japonica HOM05D004963 ORTHO05D006638 0.0e+00 2365.5 1957 63.0
MELO3C026582.2 Cucumis melo HOM05D004963 ORTHO05D006638 0.0e+00 2356.6 1968 61.9
Phvul.004G006800 Phaseolus vulgaris HOM05D004963 ORTHO05D006638 0.0e+00 2347.4 1954 61.2
Lalb_Chr06g0175731 Lupinus albus HOM05D004963 ORTHO05D006638 0.0e+00 2342.4 1933 61.7
CsaV3_3G042810 Cucumis sativus L. HOM05D004963 ORTHO05D006638 0.0e+00 2333.5 1968 61.5
Sed0022939 Sechium edule HOM05D004963 ORTHO05D006638 0.0e+00 2330.4 1967 61.0
PGR083G0595 Punica granatum HOM05D004963 ORTHO05D006638 0.0e+00 2323.5 1961 60.5
arahy.Tifrunner.gnm1.ann1.8578L4 Arachis hypogaea HOM05D004963 ORTHO05D006638 0.0e+00 2318.5 1974 61.2
Sabra16G0224100 Salix brachista HOM05D004963 ORTHO05D006638 0.0e+00 2277.7 2168 56.7
VMungo0464G1605 Vigna mungo HOM05D004963 ORTHO05D006638 0.0e+00 2248.8 2255 53.3
Rhsim10G0016800 Rhododendron simsii HOM05D004963 ORTHO05D006638 0.0e+00 2234.1 2164 55.9
THA.LOC104805370 Tarenaya hassleriana HOM05D004963 ORTHO05D006638 0.0e+00 2233.4 1963 59.2
COL.COLO4_29124 Corchorus olitorius HOM05D004963 ORTHO05D006638 0.0e+00 2218.7 1956 60.4
Nn4g22627 Nelumbo nucifera HOM05D004963 ORTHO05D006638 0.0e+00 2216.8 1831 62.0
Duzib147G0997 Durio zibethinus HOM05D004963 ORTHO05D006638 0.0e+00 2213.0 1963 59.8
CAN.G257.2 Capsicum annuum HOM05D004963 ORTHO05D006638 0.0e+00 2197.9 1954 57.5
PGSC0003DMG400008314 Solanum tuberosum HOM05D004963 ORTHO05D006638 0.0e+00 2197.9 1958 57.6
Solyc02g070810.4 Solanum lycopersicum HOM05D004963 ORTHO05D006638 0.0e+00 2193.7 1954 57.4
Sopen02g019920 Solanum pennellii HOM05D004963 ORTHO05D006638 0.0e+00 2189.8 1957 57.6
Nitab4.5_0001040g0180 Nicotiana tabacum HOM05D004963 ORTHO05D006638 0.0e+00 2187.9 1970 56.9
vmacro05867 Vaccinium macrocarpon HOM05D004963 ORTHO05D006638 0.0e+00 2176.0 2133 55.6
Nitab4.5_0001655g0190 Nicotiana tabacum HOM05D004963 ORTHO05D006638 0.0e+00 2172.9 1966 56.8
PSO063G6295 Papaver somniferum HOM05D004963 ORTHO05D006638 0.0e+00 2170.6 1971 56.9
Gohir.A09G029300 Gossypium hirsutum HOM05D004963 ORTHO05D006638 0.0e+00 2169.8 1812 62.1
DCAR_001439 Daucus carota HOM05D004963 ORTHO05D006638 0.0e+00 2163.3 1948 58.1
Rhsim10G0015700 Rhododendron simsii HOM05D004963 ORTHO05D006638 0.0e+00 2147.5 1933 59.1
PSO067G0032 Papaver somniferum HOM05D004963 ORTHO05D006638 0.0e+00 2146.3 1971 56.5
Thhalv10027618m.g Eutrema salsugineum HOM05D004963 ORTHO05D006638 0.0e+00 2145.9 1964 57.1
Peaxi162Scf00796g00213 Petunia axillaris HOM05D004963 ORTHO05D006638 0.0e+00 2145.5 1944 56.6
BolC6t37108H Brassica oleracea HOM05D004963 ORTHO05D006638 0.0e+00 2130.5 1974 55.8
BcaC08g44458 Brassica carinata HOM05D004963 ORTHO05D006638 0.0e+00 2129.0 1958 56.0
BraA07t29729Z Brassica rapa HOM05D004963 ORTHO05D006638 0.0e+00 2127.1 1961 55.9
Sc03g0007420 Simmondsia chinensis HOM05D004963 ORTHO05D006638 0.0e+00 2122.4 1818 59.2
CARHR261510 Cardamine hirsuta HOM05D004963 ORTHO05D006638 0.0e+00 2120.9 1952 56.5
Sp7g01430 Schrenkiella parvula HOM05D004963 ORTHO05D006638 0.0e+00 2119.7 1967 56.4
C06p19070 Brassica napus HOM05D004963 ORTHO05D006638 0.0e+00 2119.4 1985 55.5
AL7G49340 Arabidopsis lyrata HOM05D004963 ORTHO05D006638 0.0e+00 2117.0 1977 56.3
MSTRG.3144 Avicennia marina HOM05D004963 ORTHO05D006638 0.0e+00 2113.6 1966 56.1
A07p20280 Brassica napus HOM05D004963 ORTHO05D006638 0.0e+00 2113.6 1983 55.3
Aqoxy5G03770 Aquilegia oxysepala HOM05D004963 ORTHO05D006638 0.0e+00 2112.0 1964 57.1
Carub.0007s3510 Capsella rubella HOM05D004963 ORTHO05D006638 0.0e+00 2110.1 1963 56.1
AT5G40480 Arabidopsis thaliana HOM05D004963 ORTHO05D006638 0.0e+00 2107.0 1957 56.1
Cc07_g01650 Coffea canephora HOM05D004963 ORTHO05D006638 0.0e+00 2106.6 1960 56.4
Aa31LG9G1130 Aethionema arabicum HOM05D004963 ORTHO05D006638 0.0e+00 2083.9 2003 54.5
Ah.03g137060 Amaranthus hybridus HOM05D004963 ORTHO05D006638 0.0e+00 2077.0 1957 55.2
Atru.chr6.2399 Acer truncatum HOM05D004963 ORTHO05D006638 0.0e+00 2054.3 1597 65.7
SalBow1G1005 Salvia bowleyana HOM05D004963 ORTHO05D006638 0.0e+00 2053.1 1962 55.2
AUR62043498 Chenopodium quinoa HOM05D004963 ORTHO05D006638 0.0e+00 1983.0 1934 54.2
Migut.H00075 Erythranthe guttata HOM05D004963 ORTHO05D006638 0.0e+00 1974.1 1961 53.5
SGA_v2.0_scaffold18G08276 Striga asiatica HOM05D004963 ORTHO05D006638 0.0e+00 1973.4 1975 53.2
BcaB02g07947 Brassica carinata HOM05D004963 ORTHO05D006638 0.0e+00 1941.0 1828 55.4
AUR62028465 Chenopodium quinoa HOM05D004963 ORTHO05D006638 0.0e+00 1914.8 1975 52.5
EL10Ac6g14083 Beta vulgaris HOM05D004963 ORTHO05D006638 0.0e+00 1887.5 1941 51.8
ATR0824G203 Amborella trichopoda HOM05D004963 ORTHO05D006638 0.0e+00 1849.7 1977 50.4
Ciclev10018026m.g Citrus clementina HOM05D004963 ORTHO05D006638 0.0e+00 1642.5 1185 69.5
Eucgr.J02245 Eucalyptus grandis HOM05D004963 ORTHO05D006638 0.0e+00 1510.0 1266 61.1
Oeu046826.1 Olea europaea HOM05D004963 ORTHO05D006638 0.0e+00 1509.2 1285 59.7
Zm00001eb096130 Zea mays HOM05D004963 ORTHO05D006638 0.0e+00 1420.2 1830 43.2
Mapoly0043s0050 Marchantia polymorpha HOM05D004963 ORTHO05D006638 0.0e+00 1305.8 2061 38.9
ClCG10G013880 Citrullus lanatus HOM05D004963 ORTHO05D006638 0.0e+00 1294.3 1082 62.2
SMO145G0002 Selaginella moellendorffii HOM05D004963 ORTHO05D006638 0.0e+00 1269.2 2013 38.3
Pp3c27_1470 Physcomitrium patens HOM05D004963 ORTHO05D006638 0.0e+00 1188.7 2046 36.0
unitig_748.g6983 Utricularia gibba HOM05D004963 ORTHO05D006638 0.0e+00 1184.9 1429 45.3
Gohir.D09G029000 Gossypium hirsutum HOM05D004963 ORTHO05D006638 0.0e+00 1149.4 1004 59.8
Migut.J01521 Erythranthe guttata HOM05D004963 ORTHO05D006638 0.0e+00 1077.4 1173 50.6
CBR_g4853 Chara braunii HOM05D004963 ORTHO05D006638 2.3e-301 1040.0 2150 33.6
ClCG10G013870 Citrullus lanatus HOM05D004963 ORTHO05D006638 1.1e-274 951.4 884 57.7
Gorai.006G033800 Gossypium raimondii HOM05D004963 ORTHO05D006638 4.4e-265 919.5 777 60.9
Ciclev10014326m.g Citrus clementina HOM05D004963 ORTHO05D006638 1.2e-257 894.8 779 59.8
SEGI_19244 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 5.8e-257 892.5 1008 48.5
Cpa.g.sc108.69 Carica papaya HOM05D004963 ORTHO05D006638 3.3e-244 850.1 1123 45.4
Migut.J01523 Erythranthe guttata HOM05D004963 ORTHO05D006638 1.2e-241 841.6 955 49.5
CDE07G0232 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 2.1e-238 830.9 957 48.0
arahy.Tifrunner.gnm1.ann1.WBLX3G Arachis hypogaea HOM05D004963 ORTHO05D006638 5.0e-200 703.4 664 57.1
Hma1.2p1_0999F.1_g246170 Hydrangea macrophylla HOM05D004963 ORTHO05D006638 1.3e-171 609.0 526 58.9
unitig_748.g6984 Utricularia gibba HOM05D004963 ORTHO05D006638 1.4e-170 605.5 492 63.2
DCAR_003836 Daucus carota HOM05D004963 ORTHO05D006638 6.8e-165 586.6 530 56.2
CARHR149540 Cardamine hirsuta HOM05D004963 ORTHO05D006638 1.3e-163 582.4 521 60.1
Gohir.D09G029066 Gossypium hirsutum HOM05D004963 ORTHO05D006638 1.1e-154 552.7 453 62.9
Gorai.006G033900 Gossypium raimondii HOM05D004963 ORTHO05D006638 4.7e-150 537.3 435 63.2
Os09g0565500 Oryza sativa ssp. japonica HOM05D004963 ORTHO05D006638 1.9e-135 488.8 654 44.3
MBI06_g10159_MAGBIO Magnolia biondii HOM05D004963 ORTHO05D006638 2.5e-135 488.4 392 63.5
Psat5g189920 Pisum sativum HOM05D004963 ORTHO05D006638 1.5e-124 452.6 306 74.8
Atru.chr6.2400 Acer truncatum HOM05D004963 ORTHO05D006638 3.9e-112 411.4 335 63.9
FAN11G1562 Fragaria x ananassa HOM05D004963 ORTHO05D006638 3.3e-111 408.3 225 90.7
FAN09G2859 Fragaria x ananassa HOM05D004963 ORTHO05D006638 7.4e-111 407.1 231 86.6
HPP92_013426 Vanilla planifolia HOM05D004963 ORTHO05D006638 3.7e-110 404.8 858 33.0
FvH4_3g31750 Fragaria vesca HOM05D004963 ORTHO05D006638 2.1e-97 362.5 189 91.0
FvH4_4g00580 Fragaria vesca HOM05D004963 ORTHO05D006638 5.2e-96 357.8 189 89.4
Os09g0565450 Oryza sativa ssp. japonica HOM05D004963 ORTHO05D006638 2.2e-94 352.4 261 64.4
Cpa.g.sc108.68 Carica papaya HOM05D004963 ORTHO05D006638 2.1e-89 335.9 224 76.3
CDE07G2050 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 2.1e-89 335.9 391 45.8
Carub.0007s0778 Capsella rubella HOM05D004963 ORTHO05D006638 1.3e-83 316.6 334 55.4
CDE07G1094 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 4.7e-65 255.0 315 44.8
FAN02G1996 Fragaria x ananassa HOM05D004963 ORTHO05D006638 6.1e-65 254.6 140 87.9
CSS0027009 Camellia sinensis var. sinensis HOM05D004963 ORTHO05D006638 1.2e-57 230.3 375 38.9
VMungo1383G2035 Vigna mungo HOM05D004963 ORTHO05D006638 9.5e-50 204.1 291 43.3
FvH4_1g22462 Fragaria vesca HOM05D004963 ORTHO05D006638 2.2e-46 193.0 123 78.0
CBR_g4854 Chara braunii HOM05D004963 ORTHO05D006638 2.9e-46 192.6 521 28.4
Psat2g063360 Pisum sativum HOM05D004963 ORTHO05D006638 1.7e-43 183.3 164 54.9
SEGI_28921 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 6.2e-41 174.9 298 35.6
Psat2g110360 Pisum sativum HOM05D002628 ORTHO05D002785 1.9e-37 163.3 332 33.7
RcHm_v2.0_Chr5g0056391 Rosa chinensis HOM05D004963 ORTHO05D006638 8.1e-33 147.9 99 80.8
SEGI_35499 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 1.8e-32 146.7 152 51.3
Psat5g059840 Pisum sativum HOM05D000434 ORTHO05D007220 2.4e-29 136.3 297 32.0
Psat5g189840 Pisum sativum HOM05D001849 ORTHO05D004075 7.8e-28 131.3 93 71.0
C06p05790 Brassica napus HOM05D004963 ORTHO05D021908 1.7e-27 130.2 132 50.0
Ca_06838_v3 Cicer arietinum L. HOM05D004963 ORTHO05D006638 2.3e-27 129.8 288 34.4
PGR083G1349 Punica granatum HOM05D004963 ORTHO05D006638 5.1e-27 128.6 174 42.5
Glyma.15G246500 Glycine max HOM05D004963 ORTHO05D006638 6.6e-27 128.3 224 37.5
C06p05800 Brassica napus HOM05D004963 ORTHO05D021908 5.6e-26 125.2 147 46.3
Psat5g059720 Pisum sativum HOM05D000434 ORTHO05D007220 8.1e-25 121.3 187 39.0
CDE07G0302 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 5.4e-21 108.6 160 42.5
Psat7g053800 Pisum sativum HOM05D001135 ORTHO05D001005 9.3e-21 107.8 140 45.0
BcaC08g43235 Brassica carinata HOM05D004963 ORTHO05D021908 1.3e-17 97.4 107 45.8
Aqoxy5G03772 Aquilegia oxysepala HOM05D004963 ORTHO05D006638 1.6e-17 97.1 144 43.8
FvH4_3g30141 Fragaria vesca HOM05D002675 ORTHO05D022630 1.4e-16 94.0 127 47.2
Psat3g009720 Pisum sativum HOM05D003492 ORTHO05D005540 1.3e-14 87.4 90 48.9
Zm00001eb027130 Zea mays HOM05D004963 ORTHO05D006638 1.3e-14 87.4 223 29.1
Thhalv10017260m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 2.9e-14 86.3 85 49.4
Thhalv10017271m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 2.9e-14 86.3 85 49.4
Carub.0006s0908 Capsella rubella HOM05D004963 ORTHO05D021908 4.9e-14 85.5 133 41.4
Thhalv10017254m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 6.5e-14 85.1 85 48.2
Zm00001eb387740 Zea mays HOM05D004963 ORTHO05D006638 1.9e-13 83.6 88 46.6
A02p14020 Brassica napus HOM05D015603 ORTHO05D017573 3.2e-13 82.8 89 47.2
BraA02t06462Z Brassica rapa HOM05D015603 ORTHO05D017573 2.7e-12 79.7 87 47.1
Cpa.g.c33664.1 Carica papaya HOM05D004963 ORTHO05D006638 6.0e-12 78.6 54 68.5
Actinidia36871 Actinidia chinensis HOM05D004963 ORTHO05D006638 1.3e-11 77.4 88 47.7
FvH4_6g01570 Fragaria vesca HOM05D050252 ORTHO05D046045 1.5e-10 73.9 124 42.7
Zm00001eb119700 Zea mays HOM05D004963 ORTHO05D006638 1.6e-09 70.5 97 36.1
Psat0s4196g0080 Pisum sativum HOM05D004963 ORTHO05D006638 3.7e-09 69.3 51 60.8
Psat4g170200 Pisum sativum HOM05D003662 ORTHO05D001824 3.7e-09 69.3 54 59.3
C02p22570 Brassica napus HOM05D015603 ORTHO05D017573 6.2e-09 68.6 114 38.6
BolC2t08411H Brassica oleracea HOM05D015603 ORTHO05D017573 6.2e-09 68.6 114 38.6
FAN19G2132 Fragaria x ananassa HOM05D050252 ORTHO05D046045 3.1e-08 66.2 68 58.8
FvH4_4g00983 Fragaria vesca HOM05D011771 ORTHO05D022630 9.0e-08 64.7 55 63.6
Actinidia27518 Actinidia chinensis HOM05D001993 ORTHO05D030912 1.5e-07 63.9 46 69.6
Psat7g026160 Pisum sativum HOM05D004963 ORTHO05D001824 5.8e-07 62.0 58 51.7
FvH4_2g19061 Fragaria vesca HOM05D000001 ORTHO05D198241 3.8e-06 59.3 87 42.5
Actinidia30715 Actinidia chinensis HOM05D004963 ORTHO05D006638 6.5e-06 58.5 111 38.7
Hund10088 Selenicereus undatus HOM05D004963 ORTHO05D006638 6.5e-06 58.5 80 40.0


User provided reference genes

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