Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0172691 Rosa chinensis HOM05D005440 ORTHO05D007314 1.7e-40 168.7 75 100.0
RcHm_v2.0_Chr2g0153881 Rosa chinensis HOM05D005440 ORTHO05D007314 2.4e-26 121.7 61 86.9
FAN09G4325 Fragaria x ananassa HOM05D005440 ORTHO05D007314 3.1e-26 121.3 62 85.5
FvH4_6g39770 Fragaria vesca HOM05D005440 ORTHO05D007314 7.0e-26 120.2 61 85.2
FAN02G0818 Fragaria x ananassa HOM05D005440 ORTHO05D007314 9.1e-26 119.8 61 85.2
Ca_16308_v3 Cicer arietinum L. HOM05D005440 ORTHO05D007314 3.5e-25 117.9 62 82.3
MD17G1127100 Malus domestica HOM05D005440 ORTHO05D007314 3.5e-25 117.9 61 85.2
MD09G1136900 Malus domestica HOM05D005440 ORTHO05D007314 1.3e-24 115.9 58 86.2
FAN14G2598 Fragaria x ananassa HOM05D005440 ORTHO05D007314 1.7e-24 115.5 62 83.9
Thecc.01G171200 Theobroma cacao HOM05D005440 ORTHO05D007314 1.7e-24 115.5 60 83.3
Lalb_Chr24g0402811 Lupinus albus HOM05D005440 ORTHO05D007314 2.2e-24 115.2 60 83.3
Glyma.13G003900 Glycine max HOM05D005440 ORTHO05D007314 2.9e-24 114.8 60 83.3
Hma1.2p1_1803F.1_g302990 Hydrangea macrophylla HOM05D005440 ORTHO05D007314 2.9e-24 114.8 60 85.0
Phvul.006G001800 Phaseolus vulgaris HOM05D005440 ORTHO05D007314 2.9e-24 114.8 60 83.3
THA.LOC104800970 Tarenaya hassleriana HOM05D005440 ORTHO05D007314 2.9e-24 114.8 60 83.3
TPR.G33572 Trifolium pratense HOM05D005440 ORTHO05D007314 2.9e-24 114.8 58 84.5
QL04p060188 Quercus lobata HOM05D005440 ORTHO05D007314 3.8e-24 114.4 60 83.3
Cfa023527 Carpinus fangiana HOM05D005440 ORTHO05D007314 5.0e-24 114.0 60 83.3
Prupe.3G188100 Prunus persica HOM05D005440 ORTHO05D007314 5.0e-24 114.0 57 87.7
Glyma.20G065600 Glycine max HOM05D005440 ORTHO05D007314 6.5e-24 113.6 60 81.7
Medtr3g081180 Medicago truncatula HOM05D005440 ORTHO05D007314 6.5e-24 113.6 58 82.8
Potri.006G023400 Populus trichocarpa HOM05D005440 ORTHO05D007314 8.5e-24 113.2 60 81.7
Aqoxy1G01485 Aquilegia oxysepala HOM05D005440 ORTHO05D007314 1.1e-23 112.8 60 80.0
Dinv02983 Davidia involucrata HOM05D005440 ORTHO05D007314 1.1e-23 112.8 60 81.7
CARHR125970 Cardamine hirsuta HOM05D005440 ORTHO05D007314 1.4e-23 112.5 59 83.1
Ciclev10011552m.g Citrus clementina HOM05D005440 ORTHO05D007314 1.4e-23 112.5 60 81.7
Thhalv10017571m.g Eutrema salsugineum HOM05D005440 ORTHO05D007314 1.4e-23 112.5 58 84.5
MBI18_g10015_MAGBIO Magnolia biondii HOM05D005440 ORTHO05D007314 1.4e-23 112.5 60 81.7
Migut.L00575 Erythranthe guttata HOM05D005440 ORTHO05D007314 1.9e-23 112.1 60 83.3
CAN.G1156.52 Capsicum annuum HOM05D005440 ORTHO05D007314 2.5e-23 111.7 60 81.7
Nn5g27478 Nelumbo nucifera HOM05D005440 ORTHO05D007314 2.5e-23 111.7 60 81.7
PSO541G5910 Papaver somniferum HOM05D005440 ORTHO05D007314 2.5e-23 111.7 60 78.3
PSO675G6996 Papaver somniferum HOM05D005440 ORTHO05D007314 2.5e-23 111.7 60 78.3
AL4G27520 Arabidopsis lyrata HOM05D005440 ORTHO05D007314 3.2e-23 111.3 59 81.4
AT2G32170 Arabidopsis thaliana HOM05D005440 ORTHO05D007314 3.2e-23 111.3 59 81.4
BcaB06g28584 Brassica carinata HOM05D005440 ORTHO05D007314 3.2e-23 111.3 56 85.7
BcaC02g07946 Brassica carinata HOM05D005440 ORTHO05D007314 3.2e-23 111.3 56 85.7
BolC4t27650H Brassica oleracea HOM05D005440 ORTHO05D007314 3.2e-23 111.3 56 85.7
Lj6g0026846 Lotus japonicus HOM05D005440 ORTHO05D007314 3.2e-23 111.3 60 80.0
Oeu053137.1 Olea europaea HOM05D005440 ORTHO05D007314 3.2e-23 111.3 60 81.7
Duzib133G0846 Durio zibethinus HOM05D005440 ORTHO05D007314 4.2e-23 110.9 59 79.7
Gohir.D07G086600 Gossypium hirsutum HOM05D005440 ORTHO05D007314 4.2e-23 110.9 60 78.3
Gorai.001G092600 Gossypium raimondii HOM05D005440 ORTHO05D007314 4.2e-23 110.9 60 78.3
Potri.016G021400 Populus trichocarpa HOM05D005440 ORTHO05D007314 4.2e-23 110.9 60 81.7
Potri.016G021900 Populus trichocarpa HOM05D005440 ORTHO05D007314 4.2e-23 110.9 60 81.7
Sp4g14550 Schrenkiella parvula HOM05D005440 ORTHO05D007314 4.2e-23 110.9 61 82.0
Atru.chr5.954 Acer truncatum HOM05D005440 ORTHO05D007314 5.5e-23 110.5 60 80.0
Carub.0004s1349 Capsella rubella HOM05D005440 ORTHO05D007314 5.5e-23 110.5 56 83.9
Gohir.A07G081000 Gossypium hirsutum HOM05D005440 ORTHO05D007314 5.5e-23 110.5 60 78.3
Lalb_Chr22g0360841 Lupinus albus HOM05D005440 ORTHO05D007314 5.5e-23 110.5 60 80.0
Nitab4.5_0000496g0020 Nicotiana tabacum HOM05D005440 ORTHO05D007314 5.5e-23 110.5 60 80.0
Solyc05g056520.4 Solanum lycopersicum HOM05D005440 ORTHO05D007314 5.5e-23 110.5 60 80.0
Sopen05g034920 Solanum pennellii HOM05D005440 ORTHO05D007314 5.5e-23 110.5 60 80.0
Lsat_1_v5_gn_5_68301 Lactuca sativa HOM05D005440 ORTHO05D007314 7.2e-23 110.2 71 70.4
Aa31LG5G4880 Aethionema arabicum HOM05D005440 ORTHO05D007314 9.4e-23 109.8 64 75.0
TWI60G0164 Tripterygium wilfordii HOM05D005440 ORTHO05D007314 9.4e-23 109.8 59 81.4
A04p24740 Brassica napus HOM05D005440 ORTHO05D007314 1.6e-22 109.0 56 83.9
C04p61670 Brassica napus HOM05D005440 ORTHO05D007314 1.6e-22 109.0 56 83.9
BraA04t17992Z Brassica rapa HOM05D005440 ORTHO05D007314 1.6e-22 109.0 56 83.9
Peaxi162Scf00525g00411 Petunia axillaris HOM05D005440 ORTHO05D007314 1.6e-22 109.0 57 80.7
Rhsim12G0014000 Rhododendron simsii HOM05D005440 ORTHO05D007314 1.6e-22 109.0 60 78.3
Sabra16G0024900 Salix brachista HOM05D005440 ORTHO05D007314 1.6e-22 109.0 60 80.0
GSVIVG01026115001 Vitis vinifera HOM05D005440 ORTHO05D007314 1.6e-22 109.0 62 75.8
CiPaw.04G136100 Carya illinoinensis HOM05D005440 ORTHO05D007314 2.1e-22 108.6 60 76.7
DCAR_019996 Daucus carota HOM05D005440 ORTHO05D007314 2.1e-22 108.6 60 78.3
CSS0043590 Camellia sinensis var. sinensis HOM05D005440 ORTHO05D007314 2.7e-22 108.2 60 78.3
CDE06G0633 Ceratophyllum demersum HOM05D005440 ORTHO05D007314 2.7e-22 108.2 61 77.0
Duzib138G1709 Durio zibethinus HOM05D005440 ORTHO05D007314 3.6e-22 107.8 60 78.3
PGR004G2684 Punica granatum HOM05D005440 ORTHO05D007314 4.7e-22 107.5 60 78.3
SalBow5G0813 Salvia bowleyana HOM05D005440 ORTHO05D007314 4.7e-22 107.5 60 76.7
MSTRG.15262 Avicennia marina HOM05D005440 ORTHO05D007314 6.1e-22 107.1 60 76.7
Eucgr.K01335 Eucalyptus grandis HOM05D005440 ORTHO05D007314 6.1e-22 107.1 57 80.7
CsaV3_4G032220 Cucumis sativus L. HOM05D005440 ORTHO05D007314 8.0e-22 106.7 60 78.3
Sabra16G0027400 Salix brachista HOM05D005440 ORTHO05D007314 8.0e-22 106.7 60 78.3
TAR627G1033 Trochodendron aralioides HOM05D005440 ORTHO05D007314 8.0e-22 106.7 60 78.3
AT2G32160 Arabidopsis thaliana HOM05D005440 ORTHO05D007314 1.0e-21 106.3 60 75.0
Cc07_g20260 Coffea canephora HOM05D005440 ORTHO05D007314 1.0e-21 106.3 57 78.9
Sc15g0002420 Simmondsia chinensis HOM05D005440 ORTHO05D007314 1.0e-21 106.3 60 78.3
TWI60G0012 Tripterygium wilfordii HOM05D005440 ORTHO05D007314 1.0e-21 106.3 61 77.0
MELO3C026396.2 Cucumis melo HOM05D005440 ORTHO05D007314 1.8e-21 105.5 60 78.3
DCAR_009586 Daucus carota HOM05D005440 ORTHO05D007314 1.8e-21 105.5 60 75.0
Os05g0511300 Oryza sativa ssp. japonica HOM05D005440 ORTHO05D007314 1.8e-21 105.5 62 74.2
Sed0022130 Sechium edule HOM05D005440 ORTHO05D007314 1.8e-21 105.5 59 81.4
CANSAT64G0070 Cannabis sativa HOM05D005440 ORTHO05D007314 2.3e-21 105.1 61 77.0
HanXRQChr15g0468881 Helianthus annuus HOM05D005440 ORTHO05D007314 2.3e-21 105.1 60 76.7
THA.LOC104826162 Tarenaya hassleriana HOM05D005440 ORTHO05D007314 2.3e-21 105.1 60 73.3
Manes.09G077000 Manihot esculenta HOM05D005440 ORTHO05D007314 3.0e-21 104.8 60 76.7
Zm00001eb292540 Zea mays HOM05D005440 ORTHO05D007314 3.0e-21 104.8 62 74.2
Actinidia12520 Actinidia chinensis HOM05D005440 ORTHO05D007314 3.9e-21 104.4 57 80.7
arahy.Tifrunner.gnm1.ann1.TU4NXX Arachis hypogaea HOM05D005440 ORTHO05D007314 3.9e-21 104.4 61 77.0
AUR62015149 Chenopodium quinoa HOM05D005440 ORTHO05D007314 3.9e-21 104.4 57 77.2
AUR62017608 Chenopodium quinoa HOM05D005440 ORTHO05D007314 3.9e-21 104.4 57 77.2
unitig_32.g10657 Utricularia gibba HOM05D005440 ORTHO05D007314 5.2e-21 104.0 59 76.3
EL10Ac9g22859 Beta vulgaris HOM05D005440 ORTHO05D007314 1.5e-20 102.4 57 77.2
ATR0763G213 Amborella trichopoda HOM05D005440 ORTHO05D007314 2.6e-20 101.7 60 75.0
CARHR125960 Cardamine hirsuta HOM05D005440 ORTHO05D007314 2.6e-20 101.7 62 69.4
Cpa.g.sc8.301 Carica papaya HOM05D005440 ORTHO05D007314 2.6e-20 101.7 56 78.6
ECA233G3205 Erigeron canadensis HOM05D005440 ORTHO05D007314 7.4e-20 100.1 56 78.6
SEGI_34757 Sequoiadendron giganteum HOM05D005440 ORTHO05D007314 4.8e-19 97.4 61 67.2
HPP92_001868 Vanilla planifolia HOM05D005440 ORTHO05D007314 6.3e-19 97.1 58 69.0
Carub.0004s1348 Capsella rubella HOM05D005440 ORTHO05D007314 1.2e-17 92.8 59 67.8
Pp3c17_14810 Physcomitrium patens HOM05D005440 ORTHO05D007314 1.6e-17 92.4 56 69.6
AagrBONN_evm.TU.Sc2ySwM_368.3314 Anthoceros agrestis HOM05D005440 ORTHO05D007314 2.0e-17 92.0 56 71.4
Hund08218 Selenicereus undatus HOM05D005440 ORTHO05D007314 3.5e-17 91.3 82 57.3
SMO358G0560 Selaginella moellendorffii HOM05D005440 ORTHO05D007314 8.5e-16 86.7 56 64.3
CBR_g29536 Chara braunii HOM05D000019 ORTHO05D000048 1.1e-15 86.3 55 67.3
Mapoly0014s0077 Marchantia polymorpha HOM05D005440 ORTHO05D007314 7.2e-15 83.6 57 63.2
Pp3c1_31970 Physcomitrium patens HOM05D005440 ORTHO05D007314 9.4e-15 83.2 53 66.0
Psat5g108080 Pisum sativum HOM05D005440 ORTHO05D007314 7.5e-12 73.6 37 81.1
Haze_13637 Corylus avellana HOM05D005440 ORTHO05D007314 1.3e-11 72.8 37 83.8
Sabra06G0017100 Salix brachista HOM05D005440 ORTHO05D007314 1.3e-11 72.8 39 82.1
RcHm_v2.0_Chr5g0059521 Rosa chinensis HOM05D005440 ORTHO05D007314 1.4e-10 69.3 37 81.1
vmacro08748 Vaccinium macrocarpon HOM05D005440 ORTHO05D007314 4.1e-10 67.8 37 75.7
Sabra16G0025200 Salix brachista HOM05D005440 ORTHO05D007314 5.3e-10 67.4 36 80.6
Lj4C830T18 Lonicera japonica HOM05D005440 ORTHO05D007314 7.0e-10 67.0 40 70.0
Cre03.g188950 Chlamydomonas reinhardtii HOM05D005440 ORTHO05D007314 5.9e-09 63.9 54 51.9
Ah.01g013380 Amaranthus hybridus HOM05D005440 ORTHO05D007314 2.2e-08 62.0 36 72.2
MCO05G304 Micromonas commoda HOM05D005440 ORTHO05D007314 2.2e-08 62.0 61 47.5
Atru.ctg1434.11 Acer truncatum HOM05D005440 ORTHO05D007314 5.5e-07 57.4 79 40.5


User provided reference genes

Program Settings