Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0172551 Rosa chinensis HOM05D003958 ORTHO05D004864 2.8e-177 625.2 313 100.0
FvH4_6g51011 Fragaria vesca HOM05D003958 ORTHO05D004864 4.4e-167 591.3 313 95.2
Prupe.3G287900 Prunus persica HOM05D003958 ORTHO05D004864 8.4e-158 560.5 313 87.9
CANSAT64G0951 Cannabis sativa HOM05D003958 ORTHO05D004864 4.3e-146 521.5 317 81.7
DCAR_009028 Daucus carota HOM05D003958 ORTHO05D004864 4.3e-146 521.5 313 82.4
QL02p075632 Quercus lobata HOM05D003958 ORTHO05D004864 2.1e-145 519.2 312 82.4
CSS0020788 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 4.8e-145 518.1 313 81.8
CSS0020854 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 4.8e-145 518.1 313 81.8
Atru.chr6.2341 Acer truncatum HOM05D003958 ORTHO05D004864 6.2e-145 517.7 314 83.1
Sed0009763 Sechium edule HOM05D003958 ORTHO05D004864 1.8e-144 516.2 313 82.1
CiPaw.03G040700 Carya illinoinensis HOM05D003958 ORTHO05D004864 2.4e-144 515.8 313 82.1
ClCG01G008920 Citrullus lanatus HOM05D003958 ORTHO05D004864 5.3e-144 514.6 313 80.8
FAN14G0618 Fragaria x ananassa HOM05D003958 ORTHO05D004864 1.7e-142 509.6 266 95.9
MD09G1029500 Malus domestica HOM05D003958 ORTHO05D004864 2.2e-142 509.2 282 88.7
CsaV3_1G037790 Cucumis sativus L. HOM05D003958 ORTHO05D004864 2.9e-142 508.8 313 80.2
Manes.17G113700 Manihot esculenta HOM05D003958 ORTHO05D004864 1.9e-141 506.1 302 82.5
Aqoxy2G00425 Aquilegia oxysepala HOM05D003958 ORTHO05D004864 2.5e-141 505.8 314 80.3
MELO3C021808.2 Cucumis melo HOM05D003958 ORTHO05D004864 3.2e-141 505.4 313 79.9
Duzib147G0566 Durio zibethinus HOM05D003958 ORTHO05D004864 1.2e-140 503.4 303 82.5
Aqoxy3G00906 Aquilegia oxysepala HOM05D003958 ORTHO05D004864 1.6e-140 503.1 315 79.4
FAN09G1134 Fragaria x ananassa HOM05D003958 ORTHO05D004864 1.6e-140 503.1 269 94.1
Duzib147G0735 Durio zibethinus HOM05D003958 ORTHO05D004864 2.1e-140 502.7 303 82.2
TAR622G1043 Trochodendron aralioides HOM05D003958 ORTHO05D004864 2.1e-140 502.7 311 79.1
Lj7A595G65 Lonicera japonica HOM05D003958 ORTHO05D004864 3.5e-140 501.9 313 80.8
vmacro18265 Vaccinium macrocarpon HOM05D003958 ORTHO05D004864 4.6e-140 501.5 332 77.4
Thecc.04G013700 Theobroma cacao HOM05D003958 ORTHO05D004864 6.0e-140 501.1 303 81.8
CiPaw.04G026700 Carya illinoinensis HOM05D003958 ORTHO05D004864 7.9e-140 500.7 313 79.6
Ciclev10016011m.g Citrus clementina HOM05D003958 ORTHO05D004864 1.0e-139 500.4 313 78.9
Lalb_Chr03g0031671 Lupinus albus HOM05D003958 ORTHO05D004864 1.3e-139 500.0 313 80.5
Duzib147G0897 Durio zibethinus HOM05D003958 ORTHO05D004864 3.9e-139 498.4 307 82.1
TPR.G11724 Trifolium pratense HOM05D003958 ORTHO05D004864 3.9e-139 498.4 306 78.8
Lju41A38T12 Lonicera japonica HOM05D003958 ORTHO05D004864 5.1e-139 498.0 313 78.6
COL.COLO4_29053 Corchorus olitorius HOM05D003958 ORTHO05D004864 6.7e-139 497.7 305 80.7
Haze_14701 Corylus avellana HOM05D003958 ORTHO05D004864 1.9e-138 496.1 304 81.2
Nn7g37719 Nelumbo nucifera HOM05D003958 ORTHO05D004864 1.9e-138 496.1 305 79.3
Cpa.g.sc108.31 Carica papaya HOM05D003958 ORTHO05D004864 2.5e-138 495.7 313 79.2
TWI12G0059 Tripterygium wilfordii HOM05D003958 ORTHO05D004864 2.5e-138 495.7 311 80.1
MBI05_g22036_MAGBIO Magnolia biondii HOM05D003958 ORTHO05D004864 7.4e-138 494.2 310 77.7
Lj2g0025561 Lotus japonicus HOM05D003958 ORTHO05D004864 6.3e-137 491.1 305 79.3
Gohir.D09G027100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.8e-136 489.6 313 79.2
Lj3g0001252 Lotus japonicus HOM05D003958 ORTHO05D004864 2.4e-136 489.2 313 78.9
Gorai.006G031600 Gossypium raimondii HOM05D003958 ORTHO05D004864 3.1e-136 488.8 313 79.2
CAN.G206.10 Capsicum annuum HOM05D003958 ORTHO05D004864 4.1e-136 488.4 310 78.1
Sabra18G0100500 Salix brachista HOM05D003958 ORTHO05D004864 4.1e-136 488.4 306 78.4
Cc02_g12190 Coffea canephora HOM05D003958 ORTHO05D004864 5.3e-136 488.0 311 76.5
Potri.018G120500 Populus trichocarpa HOM05D003958 ORTHO05D004864 6.9e-136 487.6 306 79.1
Ca_00876_v3 Cicer arietinum L. HOM05D003958 ORTHO05D004864 1.2e-135 486.9 309 78.6
Peaxi162Scf00129g01325 Petunia axillaris HOM05D003958 ORTHO05D004864 1.2e-135 486.9 310 77.4
arahy.Tifrunner.gnm1.ann1.CB8F3G Arachis hypogaea HOM05D003958 ORTHO05D004864 1.5e-135 486.5 312 77.9
Sabra18G0098500 Salix brachista HOM05D003958 ORTHO05D004864 2.6e-135 485.7 306 78.8
Oeu057051.1 Olea europaea HOM05D003958 ORTHO05D004864 3.4e-135 485.3 310 76.8
Ca_00369_v3 Cicer arietinum L. HOM05D003958 ORTHO05D004864 5.9e-135 484.6 313 77.6
Phvul.011G172200 Phaseolus vulgaris HOM05D003958 ORTHO05D004864 7.6e-135 484.2 303 78.9
Gohir.A09G027800 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.0e-134 483.8 313 78.3
Hund02774 Selenicereus undatus HOM05D003958 ORTHO05D004864 1.0e-134 483.8 313 77.0
arahy.Tifrunner.gnm1.ann1.38SPRB Arachis hypogaea HOM05D003958 ORTHO05D004864 1.7e-134 483.0 304 78.9
Aa31LG11G15350 Aethionema arabicum HOM05D003958 ORTHO05D004864 3.8e-134 481.9 324 75.9
ECA232G3491 Erigeron canadensis HOM05D003958 ORTHO05D004864 3.8e-134 481.9 312 77.6
Lsat_1_v5_gn_4_183181 Lactuca sativa HOM05D003958 ORTHO05D004864 3.8e-134 481.9 318 77.4
Nitab4.5_0002739g0040 Nicotiana tabacum HOM05D003958 ORTHO05D004864 3.8e-134 481.9 310 77.1
TPR.G33516 Trifolium pratense HOM05D003958 ORTHO05D004864 3.8e-134 481.9 313 77.3
EL10Ac9g21169 Beta vulgaris HOM05D003958 ORTHO05D004864 8.5e-134 480.7 313 76.4
PGR054G0003 Punica granatum HOM05D003958 ORTHO05D004864 8.5e-134 480.7 311 76.5
Sabra18G0099100 Salix brachista HOM05D003958 ORTHO05D004864 8.5e-134 480.7 305 78.0
Sopen02g031390 Solanum pennellii HOM05D003958 ORTHO05D004864 8.5e-134 480.7 310 76.8
PGSC0003DMG400000483 Solanum tuberosum HOM05D003958 ORTHO05D004864 1.1e-133 480.3 310 77.1
VMungo0540G0822 Vigna mungo HOM05D003958 ORTHO05D004864 1.4e-133 479.9 306 79.1
Medtr6g047800 Medicago truncatula HOM05D003958 ORTHO05D004864 2.5e-133 479.2 310 77.4
Nitab4.5_0008215g0010 Nicotiana tabacum HOM05D003958 ORTHO05D004864 2.5e-133 479.2 312 76.3
Psat1g092800 Pisum sativum HOM05D003958 ORTHO05D004864 2.5e-133 479.2 314 76.8
THA.LOC104821089 Tarenaya hassleriana HOM05D003958 ORTHO05D004864 3.2e-133 478.8 313 76.7
PGR119G1149 Punica granatum HOM05D003958 ORTHO05D004864 4.2e-133 478.4 311 76.2
Phvul.006G181700 Phaseolus vulgaris HOM05D003958 ORTHO05D004864 7.2e-133 477.6 306 78.1
Gohir.D13G007800 Gossypium hirsutum HOM05D003958 ORTHO05D004864 9.4e-133 477.2 307 77.2
PSO832G3613 Papaver somniferum HOM05D003958 ORTHO05D004864 9.4e-133 477.2 304 77.0
THA.LOC104802398 Tarenaya hassleriana HOM05D003958 ORTHO05D004864 9.4e-133 477.2 316 75.9
PSO063G1059 Papaver somniferum HOM05D003958 ORTHO05D004864 1.6e-132 476.5 312 75.0
AT5G14600 Arabidopsis thaliana HOM05D003958 ORTHO05D004864 2.1e-132 476.1 320 74.4
HanXRQChr09g0255001 Helianthus annuus HOM05D003958 ORTHO05D004864 3.6e-132 475.3 306 78.1
Eucgr.I01766 Eucalyptus grandis HOM05D003958 ORTHO05D004864 4.6e-132 474.9 310 76.8
Psat1g202680 Pisum sativum HOM05D003958 ORTHO05D004864 6.1e-132 474.6 303 78.2
AL6G25360 Arabidopsis lyrata HOM05D003958 ORTHO05D004864 1.8e-131 473.0 320 74.4
MSTRG.3157 Avicennia marina HOM05D003958 ORTHO05D004864 3.0e-131 472.2 310 76.5
Carub.0006s1277 Capsella rubella HOM05D003958 ORTHO05D004864 2.5e-130 469.2 322 73.9
Glyma.15G078000 Glycine max HOM05D003958 ORTHO05D004864 5.7e-130 468.0 305 77.4
CARHR198720 Cardamine hirsuta HOM05D003958 ORTHO05D004864 9.7e-130 467.2 320 74.1
Thhalv10014133m.g Eutrema salsugineum HOM05D003958 ORTHO05D004864 9.7e-130 467.2 320 73.4
Glyma.13G234900 Glycine max HOM05D003958 ORTHO05D004864 1.7e-129 466.5 307 78.5
Hma1.2p1_0858F.1_g229230 Hydrangea macrophylla HOM05D003958 ORTHO05D004864 1.7e-129 466.5 334 72.5
Migut.H00096 Erythranthe guttata HOM05D003958 ORTHO05D004864 4.8e-129 464.9 310 74.2
CDE06G0036 Ceratophyllum demersum HOM05D003958 ORTHO05D004864 1.8e-128 463.0 311 74.9
AUR62002487 Chenopodium quinoa HOM05D003958 ORTHO05D004864 2.6e-127 459.1 331 71.0
ATR0057G029 Amborella trichopoda HOM05D003958 ORTHO05D004864 1.0e-126 457.2 313 75.7
C09p62510 Brassica napus HOM05D003958 ORTHO05D004864 2.2e-126 456.1 322 71.1
BraA10t44467Z Brassica rapa HOM05D003958 ORTHO05D004864 6.5e-126 454.5 322 70.8
Sc03g0007660 Simmondsia chinensis HOM05D003958 ORTHO05D004864 1.4e-125 453.4 297 74.7
A10p24040 Brassica napus HOM05D003958 ORTHO05D004864 1.9e-125 453.0 322 70.5
Sabra18G0101000 Salix brachista HOM05D003958 ORTHO05D004864 7.2e-125 451.1 282 78.4
AUR62023705 Chenopodium quinoa HOM05D003958 ORTHO05D004864 2.1e-124 449.5 300 75.0
Sp6g29430 Schrenkiella parvula HOM05D003958 ORTHO05D004864 4.7e-124 448.4 316 71.2
BolC9t59091H Brassica oleracea HOM05D003958 ORTHO05D004864 1.0e-123 447.2 329 69.0
BcaNung03113 Brassica carinata HOM05D003958 ORTHO05D004864 1.4e-123 446.8 318 71.1
SGA_v2.0_scaffold196G40937 Striga asiatica HOM05D003958 ORTHO05D004864 2.6e-122 442.6 312 71.8
Cfa007405 Carpinus fangiana HOM05D003958 ORTHO05D004864 1.4e-120 436.8 307 73.9
Zm00001eb071120 Zea mays HOM05D003958 ORTHO05D004864 2.5e-117 426.0 321 67.3
Sabra18G0098900 Salix brachista HOM05D003958 ORTHO05D004864 1.8e-115 419.9 263 77.6
MD17G1031500 Malus domestica HOM05D003958 ORTHO05D004864 7.4e-114 414.5 223 91.0
Os04g0319600 Oryza sativa ssp. japonica HOM05D003958 ORTHO05D004864 4.8e-113 411.8 323 64.1
BcaC03g13470 Brassica carinata HOM05D003958 ORTHO05D004864 7.0e-112 407.9 318 66.7
SEGI_01237 Sequoiadendron giganteum HOM05D003958 ORTHO05D004864 1.2e-111 407.1 323 64.7
Dinv35088 Davidia involucrata HOM05D003958 ORTHO05D004864 5.0e-110 401.7 313 68.7
arahy.Tifrunner.gnm1.ann1.8Z0BSJ Arachis hypogaea HOM05D003958 ORTHO05D004864 6.5e-110 401.4 309 66.7
Gorai.013G008200 Gossypium raimondii HOM05D003958 ORTHO05D004864 1.5e-109 400.2 307 67.1
CSS0027303 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 8.0e-108 394.4 313 66.5
AagrBONN_evm.TU.Sc2ySwM_344.690 Anthoceros agrestis HOM05D003958 ORTHO05D004864 1.6e-100 370.2 322 60.6
Pp3c18_5220 Physcomitrium patens HOM05D003958 ORTHO05D004864 6.1e-100 368.2 332 60.8
HPP92_013732 Vanilla planifolia HOM05D003958 ORTHO05D004864 7.5e-98 361.3 220 77.3
Medtr2g014590 Medicago truncatula HOM05D003958 ORTHO05D004864 2.2e-97 359.8 232 75.0
SMO361G0280 Selaginella moellendorffii HOM05D003958 ORTHO05D004864 2.8e-97 359.4 308 62.0
SMO361G0823 Selaginella moellendorffii HOM05D003958 ORTHO05D004864 6.3e-97 358.2 302 62.9
Mapoly0053s0094 Marchantia polymorpha HOM05D003958 ORTHO05D004864 2.4e-96 356.3 336 55.1
arahy.Tifrunner.gnm1.ann1.Z5MU8N Arachis hypogaea HOM05D003958 ORTHO05D004864 4.3e-85 318.9 205 78.0
SGA_v2.0_scaffold34G13865 Striga asiatica HOM05D003958 ORTHO05D004864 8.0e-84 314.7 323 54.8
arahy.Tifrunner.gnm1.ann1.M5ZQAR Arachis hypogaea HOM05D003958 ORTHO05D004864 1.0e-83 314.3 227 70.5
CBR_g9110 Chara braunii HOM05D003958 ORTHO05D004864 2.6e-82 309.7 235 64.7
unitig_62.g23558 Utricularia gibba HOM05D003958 ORTHO05D004864 6.4e-81 305.1 211 71.6
Atru.chr6.2249 Acer truncatum HOM05D003958 ORTHO05D004864 2.3e-75 286.6 166 84.9
Cre05.g244236 Chlamydomonas reinhardtii HOM05D003958 ORTHO05D004864 1.3e-73 280.8 286 52.8
MCO10G191 Micromonas commoda HOM05D003958 ORTHO05D004864 2.9e-73 279.6 315 50.5
GSVIVG01032441001 Vitis vinifera HOM05D000462 ORTHO05D002607 7.0e-72 275.0 156 85.9
PRCOL_00006622 Prasinoderma coloniale HOM05D003958 ORTHO05D004864 1.2e-66 257.7 346 43.1
Ah.07g203270 Amaranthus hybridus HOM05D003958 ORTHO05D004864 7.8e-63 245.0 151 79.5
arahy.Tifrunner.gnm1.ann1.FV4QAS Arachis hypogaea HOM05D003958 ORTHO05D004864 1.0e-62 244.6 173 73.4
Eucgr.L02705 Eucalyptus grandis HOM05D003958 ORTHO05D004864 8.1e-60 235.0 171 69.0
Gohir.A10G243400 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.6e-58 229.9 134 81.3
Ah.07g203280 Amaranthus hybridus HOM05D003958 ORTHO05D004864 4.4e-58 229.2 165 68.5
FAN14G4368 Fragaria x ananassa HOM05D000001 ORTHO05D000003 9.9e-58 228.0 157 78.3
Haze_26162 Corylus avellana HOM05D003958 ORTHO05D004864 6.2e-52 208.8 292 41.1
Gohir.A03G000004 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.2e-49 200.3 112 85.7
Gohir.A01G232100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.4e-48 197.6 116 80.2
Sopen06g018800 Solanum pennellii HOM05D003958 ORTHO05D004864 3.2e-48 196.4 132 75.8
Gorai.007G380200 Gossypium raimondii HOM05D003958 ORTHO05D004864 7.1e-48 195.3 116 79.3
Gohir.D11G349300 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.7e-47 193.4 113 79.6
Gorai.004G293900 Gossypium raimondii HOM05D003958 ORTHO05D004864 3.5e-47 193.0 113 79.6
Gorai.006G274500 Gossypium raimondii HOM05D003958 ORTHO05D004864 3.5e-47 193.0 113 79.6
Gohir.D09G250100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.0e-46 191.4 113 79.6
Gohir.D08G275428 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.3e-46 191.0 113 78.8
Gorai.N017600 Gossypium raimondii HOM05D003958 ORTHO05D004864 1.3e-46 191.0 110 81.8
Gohir.D01G222101 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.3e-46 190.3 113 79.6
Gohir.D03G178200 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.5e-45 186.8 113 77.0
BcaC01g04875 Brassica carinata HOM05D003958 ORTHO05D004864 3.3e-45 186.4 241 46.9
FAN05G2568 Fragaria x ananassa HOM05D003958 ORTHO05D004864 2.1e-44 183.7 136 72.1
Gohir.A12G000201 Gossypium hirsutum HOM05D003958 ORTHO05D004864 3.4e-42 176.4 290 42.4
Gohir.A06G000101 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.7e-39 166.8 93 86.0
Gohir.1Z049515 Gossypium hirsutum HOM05D003958 ORTHO05D015143 1.3e-38 164.5 97 78.4
Gorai.006G275300 Gossypium raimondii HOM05D003958 ORTHO05D015143 2.3e-38 163.7 97 78.4
Gorai.001G000100 Gossypium raimondii HOM05D003958 ORTHO05D004864 5.5e-32 142.5 84 77.4
Atru.chr6.2248 Acer truncatum HOM05D003958 ORTHO05D004864 1.2e-31 141.4 94 76.6
FAN05G2311 Fragaria x ananassa HOM05D003958 ORTHO05D004864 5.1e-30 136.0 107 71.0
C03p32750 Brassica napus HOM05D003958 ORTHO05D004864 1.4e-24 117.9 95 61.1
BolC3t15610H Brassica oleracea HOM05D003958 ORTHO05D004864 1.4e-24 117.9 95 61.1
Gohir.A09G249500 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.9e-21 107.5 64 84.4
Gohir.1Z049410 Gossypium hirsutum HOM05D003958 ORTHO05D004864 4.3e-21 106.3 64 84.4
CSS0019434 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 1.8e-19 100.9 74 73.0
Gorai.007G000600 Gossypium raimondii HOM05D001392 ORTHO05D014312 3.1e-19 100.1 79 64.6
Gorai.013G272500 Gossypium raimondii HOM05D003958 ORTHO05D004864 1.2e-18 98.2 93 59.1
Gohir.D11G176600 Gossypium hirsutum HOM05D003958 ORTHO05D004864 3.4e-18 96.7 93 58.1
Nitab4.5_0001556g0020 Nicotiana tabacum HOM05D003958 ORTHO05D004864 3.4e-18 96.7 81 60.5
Gohir.D07G000766 Gossypium hirsutum HOM05D003958 ORTHO05D004864 5.9e-18 95.9 93 58.1
Gohir.D08G275100 Gossypium hirsutum HOM05D003958 ORTHO05D005872 1.1e-16 91.7 49 87.8
Gorai.N025700 Gossypium raimondii HOM05D003958 ORTHO05D005872 1.1e-16 91.7 49 87.8
Gohir.A02G000100 Gossypium hirsutum HOM05D003958 ORTHO05D005454 1.9e-16 90.9 47 87.2
Gohir.1Z049564 Gossypium hirsutum HOM05D003958 ORTHO05D004864 3.2e-16 90.1 49 85.7
Gohir.1Z049570 Gossypium hirsutum HOM05D003958 ORTHO05D005872 3.2e-16 90.1 49 85.7
Solyc06g053690.3 Solanum lycopersicum HOM05D003958 ORTHO05D004864 3.9e-14 83.2 63 63.5
Oeu056467.1 Olea europaea HOM05D003958 ORTHO05D004864 7.4e-13 79.0 225 28.4
Medtr2g014570 Medicago truncatula HOM05D003958 ORTHO05D004864 4.5e-10 69.7 67 61.2
BcaC03g13467 Brassica carinata HOM05D002486 ORTHO05D002606 2.9e-09 67.0 153 32.7
AL4G39060 Arabidopsis lyrata HOM05D000001 ORTHO05D009069 2.1e-07 60.8 96 40.6


User provided reference genes

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