Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0172251 Rosa chinensis HOM05D005169 ORTHO05D006436 1.0e-77 293.9 214 100.0
FvH4_6g50860 Fragaria vesca HOM05D005169 ORTHO05D006436 5.2e-50 201.8 215 63.7
FAN05G3636 Fragaria x ananassa HOM05D005169 ORTHO05D006436 1.3e-48 197.2 160 75.0
FAN09G4345 Fragaria x ananassa HOM05D005169 ORTHO05D006436 5.0e-45 185.3 164 68.9
FAN14G0546 Fragaria x ananassa HOM05D005169 ORTHO05D006436 8.6e-45 184.5 212 63.7
Haze_14687 Corylus avellana HOM05D005169 ORTHO05D006436 3.7e-32 142.5 150 50.0
MD17G1033200 Malus domestica HOM05D005169 ORTHO05D006436 1.1e-31 141.0 168 49.4
Cfa007415 Carpinus fangiana HOM05D005169 ORTHO05D006436 1.9e-31 140.2 161 50.3
Prupe.3G286300 Prunus persica HOM05D005169 ORTHO05D006436 1.9e-31 140.2 166 56.6
Gohir.D09G026600 Gossypium hirsutum HOM05D005169 ORTHO05D006436 3.5e-30 136.0 154 53.9
Gorai.006G030600 Gossypium raimondii HOM05D005169 ORTHO05D006436 3.5e-30 136.0 154 51.3
QL02p075994 Quercus lobata HOM05D005169 ORTHO05D006436 3.5e-30 136.0 166 50.6
COL.COLO4_28998 Corchorus olitorius HOM05D005169 ORTHO05D006436 7.8e-30 134.8 156 48.7
Thecc.04G011300 Theobroma cacao HOM05D005169 ORTHO05D006436 1.7e-29 133.7 150 62.0
Dinv35078 Davidia involucrata HOM05D005169 ORTHO05D006436 5.0e-29 132.1 149 48.3
Dinv33480 Davidia involucrata HOM05D005169 ORTHO05D006436 8.6e-29 131.3 149 49.0
Gohir.A09G026900 Gossypium hirsutum HOM05D005169 ORTHO05D006436 1.9e-28 130.2 153 48.4
vmacro05837 Vaccinium macrocarpon HOM05D005169 ORTHO05D006436 2.5e-28 129.8 160 47.5
FAN05G4915 Fragaria x ananassa HOM05D005169 ORTHO05D006436 3.3e-28 129.4 197 43.7
TAR622G1423 Trochodendron aralioides HOM05D005169 ORTHO05D006436 5.6e-28 128.6 160 46.9
THA.LOC104821080 Tarenaya hassleriana HOM05D005169 ORTHO05D006436 1.6e-27 127.1 157 49.0
Lju41C36T6 Lonicera japonica HOM05D005169 ORTHO05D006436 2.1e-27 126.7 168 45.2
CiPaw.03G039400 Carya illinoinensis HOM05D005169 ORTHO05D006436 3.6e-27 125.9 149 48.3
TWI56G0416 Tripterygium wilfordii HOM05D005169 ORTHO05D006436 3.6e-27 125.9 158 56.3
Manes.15G165700 Manihot esculenta HOM05D005169 ORTHO05D006436 4.7e-27 125.6 151 62.3
Gohir.A11G067000 Gossypium hirsutum HOM05D005169 ORTHO05D006436 1.1e-26 124.4 151 45.0
Gohir.D11G070900 Gossypium hirsutum HOM05D005169 ORTHO05D006436 1.1e-26 124.4 150 46.0
Gorai.007G076200 Gossypium raimondii HOM05D005169 ORTHO05D006436 1.1e-26 124.4 150 46.0
Atru.chr6.2317 Acer truncatum HOM05D005169 ORTHO05D006256 1.4e-26 124.0 153 43.1
Potri.001G349700 Populus trichocarpa HOM05D005169 ORTHO05D006436 6.8e-26 121.7 149 46.3
Actinidia36094 Actinidia chinensis HOM05D005169 ORTHO05D006436 8.9e-26 121.3 152 46.7
TAR629G1679 Trochodendron aralioides HOM05D005169 ORTHO05D006436 1.5e-25 120.6 160 45.0
C09p62450 Brassica napus HOM05D005169 ORTHO05D006436 2.0e-25 120.2 152 44.1
BraA10t44462Z Brassica rapa HOM05D005169 ORTHO05D006436 2.0e-25 120.2 171 43.3
Sabra16G0229100 Salix brachista HOM05D005169 ORTHO05D006436 2.0e-25 120.2 148 43.9
BolC9t59083H Brassica oleracea HOM05D005169 ORTHO05D006436 5.8e-25 118.6 171 42.7
A10p23980 Brassica napus HOM05D005169 ORTHO05D006436 7.5e-25 118.2 171 42.7
CSS0037801 Camellia sinensis var. sinensis HOM05D005169 ORTHO05D006436 7.5e-25 118.2 159 43.4
CARHR198620 Cardamine hirsuta HOM05D005169 ORTHO05D006436 9.8e-25 117.9 173 52.0
Rhsim10G0020400 Rhododendron simsii HOM05D005169 ORTHO05D006256 9.8e-25 117.9 155 46.5
Hma1.2p1_0858F.1_g229310 Hydrangea macrophylla HOM05D005169 ORTHO05D006436 2.2e-24 116.7 162 55.6
Nn3g16854 Nelumbo nucifera HOM05D005169 ORTHO05D006436 2.2e-24 116.7 158 44.9
Nitab4.5_0002306g0060 Nicotiana tabacum HOM05D005169 ORTHO05D006436 2.2e-24 116.7 162 42.0
Nitab4.5_0002416g0060 Nicotiana tabacum HOM05D005169 ORTHO05D006436 8.3e-24 114.8 150 41.3
CARHR075420 Cardamine hirsuta HOM05D005169 ORTHO05D006436 1.4e-23 114.0 151 43.0
ClCG09G019030 Citrullus lanatus HOM05D005169 ORTHO05D006436 3.2e-23 112.8 150 42.7
HanXRQChr09g0266101 Helianthus annuus HOM05D005169 ORTHO05D006436 3.2e-23 112.8 152 44.1
Peaxi162Scf00700g00522 Petunia axillaris HOM05D005169 ORTHO05D006436 4.1e-23 112.5 161 39.8
Ciclev10016934m.g Citrus clementina HOM05D005169 ORTHO05D006436 7.1e-23 111.7 153 41.2
AL6G25460 Arabidopsis lyrata HOM05D005169 ORTHO05D006436 1.6e-22 110.5 176 58.0
MELO3C021551.2 Cucumis melo HOM05D005169 ORTHO05D006436 1.6e-22 110.5 150 40.7
CsaV3_5G027330 Cucumis sativus L. HOM05D005169 ORTHO05D005030 2.1e-22 110.2 150 40.0
CANSAT64G1588 Cannabis sativa HOM05D005169 ORTHO05D006436 2.7e-22 109.8 167 41.3
Carub.0003s0056 Capsella rubella HOM05D005169 ORTHO05D006436 2.7e-22 109.8 159 41.5
Medtr6g406210 Medicago truncatula HOM05D005169 ORTHO05D006436 2.7e-22 109.8 148 40.5
ECA232G1653 Erigeron canadensis HOM05D005169 ORTHO05D006436 3.5e-22 109.4 145 42.1
Cc07_g02080 Coffea canephora HOM05D005169 ORTHO05D006436 4.6e-22 109.0 150 40.7
PSO017G2305 Papaver somniferum HOM05D005169 ORTHO05D006436 4.6e-22 109.0 169 43.2
Sed0004184 Sechium edule HOM05D005169 ORTHO05D006436 4.6e-22 109.0 150 53.3
AL3G10640 Arabidopsis lyrata HOM05D005169 ORTHO05D006436 6.0e-22 108.6 153 66.0
AT3G01516 Arabidopsis thaliana HOM05D005169 ORTHO05D006436 7.8e-22 108.2 152 56.6
Carub.0006s1286 Capsella rubella HOM05D005169 ORTHO05D006436 1.0e-21 107.8 188 53.2
Thhalv10021959m.g Eutrema salsugineum HOM05D005169 ORTHO05D006436 1.0e-21 107.8 154 42.9
Peaxi162Scf00129g00124 Petunia axillaris HOM05D005169 ORTHO05D006436 1.0e-21 107.8 160 43.8
Solyc12g062840.1 Solanum lycopersicum HOM05D005169 ORTHO05D006436 1.0e-21 107.8 155 40.6
Lsat_1_v5_gn_4_182740 Lactuca sativa HOM05D005169 ORTHO05D006436 1.3e-21 107.5 153 41.2
Psat1g056600 Pisum sativum HOM05D005169 ORTHO05D006436 1.7e-21 107.1 159 37.7
C09p75080 Brassica napus HOM05D005169 ORTHO05D006436 3.0e-21 106.3 165 44.2
BolC5t35156H Brassica oleracea HOM05D005169 ORTHO05D006436 3.0e-21 106.3 165 44.2
Sp3g00540 Schrenkiella parvula HOM05D005169 ORTHO05D006436 3.0e-21 106.3 161 59.0
PGR142G3938 Punica granatum HOM05D005169 ORTHO05D006436 3.9e-21 105.9 164 41.5
BcaC05g30410 Brassica carinata HOM05D005169 ORTHO05D006436 5.1e-21 105.5 165 43.6
A05p44490 Brassica napus HOM05D005169 ORTHO05D006436 5.1e-21 105.5 166 43.4
BraA05t23207Z Brassica rapa HOM05D005169 ORTHO05D006436 5.1e-21 105.5 166 43.4
Oeu014861.1 Olea europaea HOM05D005169 ORTHO05D006436 5.1e-21 105.5 150 40.0
BcaC03g13455 Brassica carinata HOM05D005169 ORTHO05D006436 1.1e-20 104.4 149 42.3
BcaC05g30449 Brassica carinata HOM05D005169 ORTHO05D006436 1.1e-20 104.4 157 41.4
Lalb_Chr21g0319501 Lupinus albus HOM05D005169 ORTHO05D006436 1.1e-20 104.4 148 50.0
Migut.K01374 Erythranthe guttata HOM05D005169 ORTHO05D006436 2.5e-20 103.2 160 49.4
Aa31LG5G10650 Aethionema arabicum HOM05D005169 ORTHO05D006436 4.3e-20 102.4 146 41.8
Lsat_1_v5_gn_2_91781 Lactuca sativa HOM05D005169 ORTHO05D006436 4.3e-20 102.4 156 38.5
Nitab4.5_0014517g0010 Nicotiana tabacum HOM05D005169 ORTHO05D006436 4.3e-20 102.4 168 45.8
PSO478G0492 Papaver somniferum HOM05D005169 ORTHO05D006436 4.3e-20 102.4 180 45.0
AUR62013741 Chenopodium quinoa HOM05D005169 ORTHO05D006436 7.3e-20 101.7 153 40.5
AUR62023410 Chenopodium quinoa HOM05D005169 ORTHO05D006436 7.3e-20 101.7 153 40.5
Psat1g056720 Pisum sativum HOM05D005169 ORTHO05D006436 3.6e-19 99.4 163 35.0
SHI27192 Sapria himalayana HOM05D005169 ORTHO05D006436 3.6e-19 99.4 152 40.1
Sp6g29350 Schrenkiella parvula HOM05D005169 ORTHO05D006436 4.7e-19 99.0 177 53.1
DCAR_015051 Daucus carota HOM05D005169 ORTHO05D006436 6.2e-19 98.6 150 40.7
SalBow7G2461 Salvia bowleyana HOM05D005169 ORTHO05D006436 6.2e-19 98.6 150 48.0
EL10Ac1g00764 Beta vulgaris HOM05D005169 ORTHO05D006436 8.1e-19 98.2 150 40.0
MBI16_g27097_MAGBIO Magnolia biondii HOM05D005169 ORTHO05D006436 8.1e-19 98.2 154 39.0
PGSC0003DMG400000520 Solanum tuberosum HOM05D005169 ORTHO05D006436 8.1e-19 98.2 173 43.9
SGA_v2.0_scaffold135G34886 Striga asiatica HOM05D005169 ORTHO05D006436 8.1e-19 98.2 160 38.1
Solyc02g086760.1 Solanum lycopersicum HOM05D005169 ORTHO05D006436 1.1e-18 97.8 178 46.1
Sopen02g031520 Solanum pennellii HOM05D005169 ORTHO05D006436 1.1e-18 97.8 179 46.9
DCAR_021693 Daucus carota HOM05D005169 ORTHO05D006436 1.8e-18 97.1 153 39.9
SGA_v2.0_scaffold30G12455 Striga asiatica HOM05D005169 ORTHO05D006436 1.8e-18 97.1 152 44.7
HanXRQChr07g0198841 Helianthus annuus HOM05D005169 ORTHO05D006436 2.3e-18 96.7 146 37.7
Oeu062928.1 Olea europaea HOM05D005169 ORTHO05D006436 2.3e-18 96.7 154 39.0
AT5G14690 Arabidopsis thaliana HOM05D005169 ORTHO05D006436 5.2e-18 95.5 178 53.4
Thhalv10014646m.g Eutrema salsugineum HOM05D005169 ORTHO05D006436 5.2e-18 95.5 175 54.9
BraA02t05235Z Brassica rapa HOM05D005169 ORTHO05D006436 6.8e-18 95.1 165 58.8
MSTRG.3296 Avicennia marina HOM05D005169 ORTHO05D006436 8.9e-18 94.7 153 39.9
Lalb_Chr06g0175951 Lupinus albus HOM05D005169 ORTHO05D006436 8.9e-18 94.7 146 46.6
ATR0730G202 Amborella trichopoda HOM05D005169 ORTHO05D006436 3.4e-17 92.8 146 38.4
BcaNung03104 Brassica carinata HOM05D005169 ORTHO05D006436 3.4e-17 92.8 175 42.3
Sopen12g026520 Solanum pennellii HOM05D005169 ORTHO05D006436 3.4e-17 92.8 51 76.5
TPR.G10806 Trifolium pratense HOM05D005169 ORTHO05D006436 3.4e-17 92.8 54 68.5
Oeu043043.1 Olea europaea HOM05D005169 ORTHO05D006436 5.8e-17 92.0 57 68.4
Aa31LG11G14770 Aethionema arabicum HOM05D005169 ORTHO05D006436 1.3e-16 90.9 193 39.4
Migut.H00106 Erythranthe guttata HOM05D005169 ORTHO05D006436 1.7e-16 90.5 153 39.2
PSO170G4554 Papaver somniferum HOM05D005169 ORTHO05D006436 1.7e-16 90.5 147 40.1
Cpa.g.sc3104.1 Carica papaya HOM05D005169 ORTHO05D006436 2.9e-16 89.7 56 71.4
Glyma.05G006400 Glycine max HOM05D005169 ORTHO05D006436 3.8e-16 89.4 149 41.6
Ah.05g173110 Amaranthus hybridus HOM05D005169 ORTHO05D006436 6.4e-16 88.6 158 37.3
PSO144G0121 Papaver somniferum HOM05D005169 ORTHO05D006436 8.4e-16 88.2 149 53.0
Glyma.19G006800 Glycine max HOM05D005169 ORTHO05D006436 9.2e-15 84.7 153 35.3
TPR.G35382 Trifolium pratense HOM05D005169 ORTHO05D006436 1.7e-13 80.5 133 36.1
C02p07220 Brassica napus HOM05D005169 ORTHO05D006436 2.3e-13 80.1 53 69.8
BolC2t06654H Brassica oleracea HOM05D005169 ORTHO05D006436 2.3e-13 80.1 53 69.8
Ah.03g141220 Amaranthus hybridus HOM05D005169 ORTHO05D006436 5.1e-13 79.0 54 68.5
Sc16g0007930 Simmondsia chinensis HOM05D005169 ORTHO05D006436 2.5e-12 76.6 147 32.7
CDE07G0703 Ceratophyllum demersum HOM05D005169 ORTHO05D006436 4.0e-10 69.3 48 56.2
Os01g0638800 Oryza sativa ssp. japonica HOM05D005169 ORTHO05D006436 4.0e-10 69.3 141 34.0
unitig_899.g15487 Utricularia gibba HOM05D005169 ORTHO05D006436 4.0e-10 69.3 139 32.4
HPP92_024720 Vanilla planifolia HOM05D005169 ORTHO05D006436 4.0e-10 69.3 47 63.8
MD09G1031300 Malus domestica HOM05D005169 ORTHO05D006436 5.8e-09 65.5 121 40.5
Duzib147G0144 Durio zibethinus HOM05D005169 ORTHO05D006436 3.2e-07 59.7 117 47.9
SEGI_21704 Sequoiadendron giganteum HOM05D005169 ORTHO05D006436 3.2e-07 59.7 163 29.4
Zm00001eb296260 Zea mays HOM05D005169 ORTHO05D006436 3.2e-07 59.7 144 34.7
HPP92_008039 Vanilla planifolia HOM05D005169 ORTHO05D006436 4.2e-07 59.3 138 29.7
Zm00001eb157680 Zea mays HOM05D005169 ORTHO05D006436 7.1e-07 58.5 148 29.1
SEGI_22807 Sequoiadendron giganteum HOM05D005169 ORTHO05D006436 4.6e-06 55.8 139 36.7


User provided reference genes

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