Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0171411 Rosa chinensis HOM05D006484 ORTHO05D008002 4.3e-167 591.3 304 100.0
FAN14G3872 Fragaria x ananassa HOM05D006484 ORTHO05D008002 1.6e-158 562.8 302 95.4
FAN02G1518 Fragaria x ananassa HOM05D006484 ORTHO05D008002 2.8e-158 562.0 302 95.4
FvH4_6g50620 Fragaria vesca HOM05D006484 ORTHO05D008002 4.8e-158 561.2 302 95.4
FAN09G0334 Fragaria x ananassa HOM05D006484 ORTHO05D008002 1.9e-154 549.3 310 91.9
FAN05G1767 Fragaria x ananassa HOM05D006484 ORTHO05D008002 2.1e-153 545.8 336 86.0
Prupe.3G283800 Prunus persica HOM05D006484 ORTHO05D008002 2.0e-132 476.1 298 79.9
MD17G1035000 Malus domestica HOM05D006484 ORTHO05D008002 1.1e-127 460.3 304 78.0
Haze_14667 Corylus avellana HOM05D006484 ORTHO05D008002 3.7e-110 402.1 299 67.9
Cfa007430 Carpinus fangiana HOM05D006484 ORTHO05D008002 1.6e-108 396.7 268 71.6
CiPaw.03G037700 Carya illinoinensis HOM05D006484 ORTHO05D008002 3.5e-108 395.6 303 67.0
COL.COLO4_28946 Corchorus olitorius HOM05D006484 ORTHO05D008002 3.5e-108 395.6 276 69.9
Thecc.04G008700 Theobroma cacao HOM05D006484 ORTHO05D008002 6.6e-107 391.3 301 67.4
Duzib147G0204 Durio zibethinus HOM05D006484 ORTHO05D008002 1.5e-106 390.2 286 69.6
Dinv33496 Davidia involucrata HOM05D006484 ORTHO05D008002 7.2e-106 387.9 267 71.5
Potri.017G073000 Populus trichocarpa HOM05D006484 ORTHO05D008002 2.1e-105 386.3 267 71.9
Gohir.D11G071200 Gossypium hirsutum HOM05D006484 ORTHO05D008002 5.2e-104 381.7 270 72.2
Gorai.007G076500 Gossypium raimondii HOM05D006484 ORTHO05D008002 5.2e-104 381.7 270 72.2
Manes.17G122200 Manihot esculenta HOM05D006484 ORTHO05D008002 5.2e-104 381.7 269 70.3
QL02p076682 Quercus lobata HOM05D006484 ORTHO05D008002 6.8e-104 381.3 278 68.0
Gohir.A11G067300 Gossypium hirsutum HOM05D006484 ORTHO05D008002 3.4e-103 379.0 269 71.7
TAR629G1796 Trochodendron aralioides HOM05D006484 ORTHO05D008002 3.4e-103 379.0 305 63.6
PGR142G1659 Punica granatum HOM05D006484 ORTHO05D008002 4.4e-103 378.6 299 63.5
CANSAT64G2071 Cannabis sativa HOM05D006484 ORTHO05D008002 9.8e-103 377.5 301 67.1
CSS0043741 Camellia sinensis var. sinensis HOM05D006484 ORTHO05D008002 8.3e-102 374.4 304 62.8
Ciclev10016148m.g Citrus clementina HOM05D006484 ORTHO05D008002 1.6e-100 370.2 274 70.1
CsaV3_3G042410 Cucumis sativus L. HOM05D006484 ORTHO05D008002 3.5e-100 369.0 301 63.5
MELO3C009955.2 Cucumis melo HOM05D006484 ORTHO05D008002 7.8e-100 367.9 301 63.8
arahy.Tifrunner.gnm1.ann1.ND36BV Arachis hypogaea HOM05D006484 ORTHO05D008002 1.9e-98 363.2 304 65.1
arahy.Tifrunner.gnm1.ann1.J6NIZK Arachis hypogaea HOM05D006484 ORTHO05D008002 3.3e-98 362.5 304 65.1
TWI56G0797 Tripterygium wilfordii HOM05D006484 ORTHO05D008002 3.3e-98 362.5 299 62.9
Sabra16G0230700 Salix brachista HOM05D006484 ORTHO05D008002 4.3e-98 362.1 266 69.9
ClCG10G014230 Citrullus lanatus HOM05D006484 ORTHO05D008002 7.3e-98 361.3 266 68.4
THA.LOC104805398 Tarenaya hassleriana HOM05D006484 ORTHO05D008002 7.3e-98 361.3 281 68.0
Rhsim08G0055200 Rhododendron simsii HOM05D006484 ORTHO05D008002 2.1e-97 359.8 299 62.5
Hma1.2p1_0802F.1_g220370 Hydrangea macrophylla HOM05D006484 ORTHO05D008002 1.0e-96 357.5 280 64.6
Aqoxy3G01007 Aquilegia oxysepala HOM05D006484 ORTHO05D008002 1.4e-96 357.1 262 67.9
Sed0007993 Sechium edule HOM05D006484 ORTHO05D008002 1.4e-96 357.1 265 66.4
Hund05806 Selenicereus undatus HOM05D006484 ORTHO05D008002 1.4e-96 357.1 267 68.9
GSVIVG01032484001 Vitis vinifera HOM05D006484 ORTHO05D008002 2.6e-95 352.8 229 72.9
Nitab4.5_0005176g0030 Nicotiana tabacum HOM05D006484 ORTHO05D008002 2.2e-94 349.7 273 66.3
SalBow7G4444 Salvia bowleyana HOM05D006484 ORTHO05D008002 3.7e-94 349.0 277 62.8
Nitab4.5_0003337g0080 Nicotiana tabacum HOM05D006484 ORTHO05D008002 8.3e-94 347.8 274 65.7
MSTRG.15510 Avicennia marina HOM05D006484 ORTHO05D008002 1.9e-93 346.7 271 63.8
Glyma.19G009200 Glycine max HOM05D006484 ORTHO05D008002 2.4e-93 346.3 275 62.2
Lsat_1_v5_gn_0_26201 Lactuca sativa HOM05D006484 ORTHO05D008002 3.2e-93 345.9 275 61.1
Eucgr.I01814 Eucalyptus grandis HOM05D006484 ORTHO05D008002 1.6e-92 343.6 291 61.9
Migut.K01368 Erythranthe guttata HOM05D006484 ORTHO05D008002 2.0e-92 343.2 274 61.3
Phvul.004G016700 Phaseolus vulgaris HOM05D006484 ORTHO05D008002 3.5e-92 342.4 247 68.4
VMungo0464G2075 Vigna mungo HOM05D006484 ORTHO05D008002 3.5e-92 342.4 247 68.8
MBI16_g26453_MAGBIO Magnolia biondii HOM05D006484 ORTHO05D008002 1.0e-91 340.9 233 71.7
BcaC02g09737 Brassica carinata HOM05D006484 ORTHO05D008002 3.0e-91 339.3 275 64.0
C04p37040 Brassica napus HOM05D006484 ORTHO05D008002 3.0e-91 339.3 275 64.0
BolC4t25282H Brassica oleracea HOM05D006484 ORTHO05D008002 3.0e-91 339.3 275 64.0
Glyma.13G169000 Glycine max HOM05D006484 ORTHO05D008002 5.0e-91 338.6 301 58.8
HanXRQChr15g0474541 Helianthus annuus HOM05D006484 ORTHO05D008002 6.6e-91 338.2 275 60.0
A04p04700 Brassica napus HOM05D006484 ORTHO05D008002 8.6e-91 337.8 269 64.7
BraA04t16182Z Brassica rapa HOM05D006484 ORTHO05D008002 8.6e-91 337.8 269 64.7
ECA246G1918 Erigeron canadensis HOM05D006484 ORTHO05D008002 8.6e-91 337.8 234 67.9
TPR.G2295 Trifolium pratense HOM05D006484 ORTHO05D008002 1.1e-90 337.4 299 59.9
unitig_88.g27777 Utricularia gibba HOM05D000190 ORTHO05D000113 1.1e-90 337.4 235 67.7
Peaxi162Scf00129g00106 Petunia axillaris HOM05D006484 ORTHO05D008002 3.3e-90 335.9 270 63.0
PSO063G6163 Papaver somniferum HOM05D006484 ORTHO05D008002 4.3e-90 335.5 310 58.1
Lj7A591T78 Lonicera japonica HOM05D006484 ORTHO05D008002 5.6e-90 335.1 250 65.6
Sp5g07210 Schrenkiella parvula HOM05D006484 ORTHO05D008002 5.6e-90 335.1 249 68.7
AT3G55250 Arabidopsis thaliana HOM05D006484 ORTHO05D008002 7.3e-90 334.7 275 63.6
BcaB02g08436 Brassica carinata HOM05D006484 ORTHO05D008002 7.3e-90 334.7 279 63.4
CARHR165250 Cardamine hirsuta HOM05D006484 ORTHO05D008002 7.3e-90 334.7 268 64.6
SGA_v2.0_scaffold30G12470 Striga asiatica HOM05D006484 ORTHO05D008002 7.3e-90 334.7 236 69.1
AL5G36370 Arabidopsis lyrata HOM05D006484 ORTHO05D008002 9.5e-90 334.3 275 64.0
A09p48180 Brassica napus HOM05D006484 ORTHO05D008002 1.2e-89 334.0 273 63.4
C08p30440 Brassica napus HOM05D006484 ORTHO05D008002 1.2e-89 334.0 265 64.9
BraA09t40274Z Brassica rapa HOM05D006484 ORTHO05D008002 1.2e-89 334.0 273 63.7
BcaC07g39842 Brassica carinata HOM05D006484 ORTHO05D008002 2.1e-89 333.2 265 64.9
Cc07_g02300 Coffea canephora HOM05D006484 ORTHO05D008002 2.1e-89 333.2 232 69.0
Medtr6g007180 Medicago truncatula HOM05D006484 ORTHO05D008002 2.1e-89 333.2 301 58.5
Ca_04198_v3 Cicer arietinum L. HOM05D006484 ORTHO05D008002 3.6e-89 332.4 244 65.2
PSO832G1464 Papaver somniferum HOM05D006484 ORTHO05D008002 3.6e-89 332.4 268 62.7
Sopen02g031660 Solanum pennellii HOM05D006484 ORTHO05D008002 3.6e-89 332.4 280 62.9
Solyc02g086890.3 Solanum lycopersicum HOM05D006484 ORTHO05D008002 4.7e-89 332.0 280 62.5
BolC8t50667H Brassica oleracea HOM05D006484 ORTHO05D008002 8.0e-89 331.3 265 64.2
Lalb_Chr21g0319431 Lupinus albus HOM05D006484 ORTHO05D008002 1.1e-88 330.9 234 69.7
Carub.0005s2191 Capsella rubella HOM05D006484 ORTHO05D008002 6.8e-88 328.2 231 70.1
Thhalv10010599m.g Eutrema salsugineum HOM05D006484 ORTHO05D008002 6.8e-88 328.2 281 60.9
Ah.02g127510 Amaranthus hybridus HOM05D006484 ORTHO05D008002 8.9e-88 327.8 217 72.4
Sc10g0003790 Simmondsia chinensis HOM05D006484 ORTHO05D008002 2.6e-87 326.2 301 59.5
Lj2g0018435 Lotus japonicus HOM05D006484 ORTHO05D008002 4.4e-87 325.5 267 62.2
Aa31LG10G9850 Aethionema arabicum HOM05D006484 ORTHO05D008002 9.8e-87 324.3 292 60.3
EL10Ac6g14629 Beta vulgaris HOM05D006484 ORTHO05D008002 1.7e-86 323.6 261 61.7
Nn4g22800 Nelumbo nucifera HOM05D006484 ORTHO05D008002 1.1e-85 320.9 302 56.3
PGSC0003DMG401000526 Solanum tuberosum HOM05D006484 ORTHO05D008002 1.4e-85 320.5 231 68.0
PGSC0003DMG402000526 Solanum tuberosum HOM05D006484 ORTHO05D008002 1.4e-85 320.5 231 68.0
Psat1g058640 Pisum sativum HOM05D006484 ORTHO05D008002 1.2e-84 317.4 229 66.8
DCAR_021681 Daucus carota HOM05D006484 ORTHO05D008002 1.7e-83 313.5 301 53.8
CDE05G1394 Ceratophyllum demersum HOM05D001719 ORTHO05D008883 1.8e-80 303.5 222 64.9
Os05g0526200 Oryza sativa ssp. japonica HOM05D006484 ORTHO05D008002 2.0e-79 300.1 249 62.2
ATR0730G086 Amborella trichopoda HOM05D006484 ORTHO05D008002 4.9e-78 295.4 230 62.2
BcaB01g00117 Brassica carinata HOM05D006484 ORTHO05D008002 1.1e-69 267.7 221 63.8
HPP92_024318 Vanilla planifolia HOM05D006484 ORTHO05D008002 1.9e-69 266.9 239 59.4
Actinidia35740 Actinidia chinensis HOM05D006484 ORTHO05D008002 3.9e-67 259.2 179 72.1
vmacro18241 Vaccinium macrocarpon HOM05D006484 ORTHO05D008002 2.4e-64 250.0 285 48.8
AUR62007841 Chenopodium quinoa HOM05D006484 ORTHO05D008002 2.1e-60 236.9 258 50.0
Cpa.g.sc39.92 Carica papaya HOM05D006484 ORTHO05D008002 4.6e-60 235.7 167 71.3
Zm00001eb215070 Zea mays HOM05D006484 ORTHO05D008002 4.5e-47 192.6 141 66.0
BolC3t16636H Brassica oleracea HOM05D006484 ORTHO05D008002 5.8e-47 192.2 129 69.0
AagrBONN_evm.TU.Sc2ySwM_344.2636 Anthoceros agrestis HOM05D006484 ORTHO05D008002 7.6e-47 191.8 210 48.1
AUR62003035 Chenopodium quinoa HOM05D006484 ORTHO05D008002 4.9e-46 189.1 202 50.0
Pp3c21_1380 Physcomitrium patens HOM05D006484 ORTHO05D008002 6.5e-46 188.7 216 47.2
BolC7t43763H Brassica oleracea HOM05D006484 ORTHO05D008002 1.8e-43 180.6 149 59.7
Mapoly0095s0016 Marchantia polymorpha HOM05D006484 ORTHO05D008002 1.6e-41 174.1 193 45.6
SMO165G0092 Selaginella moellendorffii HOM05D006484 ORTHO05D008002 3.1e-40 169.9 197 44.7
CBR_g163 Chara braunii HOM05D006484 ORTHO05D008002 1.0e-38 164.9 199 43.2
HPP92_024280 Vanilla planifolia HOM05D006484 ORTHO05D008002 1.6e-36 157.5 151 55.0
Atru.chr6.2293 Acer truncatum HOM05D006484 ORTHO05D008002 5.1e-35 152.5 87 82.8
CAN.G473.120 Capsicum annuum HOM05D006484 ORTHO05D008002 3.4e-31 139.8 130 55.4
MD09G1034600 Malus domestica HOM05D006484 ORTHO05D000001 1.1e-29 134.8 111 65.8
MD09G1034700 Malus domestica HOM05D006484 ORTHO05D008002 3.0e-27 126.7 108 64.8
Atru.chr6.2294 Acer truncatum HOM05D006484 ORTHO05D008002 2.0e-26 124.0 88 65.9
CAN.G685.18 Capsicum annuum HOM05D006484 ORTHO05D008002 1.7e-25 120.9 88 68.2
BcaC06g34142 Brassica carinata HOM05D006484 ORTHO05D008002 6.1e-20 102.4 91 53.8
arahy.Tifrunner.gnm1.ann1.QWBN9A Arachis hypogaea HOM05D006484 ORTHO05D008002 1.1e-16 91.7 60 70.0
Cre03.g183400 Chlamydomonas reinhardtii HOM05D006484 ORTHO05D008002 1.6e-12 77.8 196 26.5
TPR.G33278 Trifolium pratense HOM05D006484 ORTHO05D008002 4.0e-11 73.2 51 62.7
arahy.Tifrunner.gnm1.ann1.5V94PQ Arachis hypogaea HOM05D005791 ORTHO05D008002 2.2e-06 57.4 34 76.5
MCO09G217 Micromonas commoda HOM05D006484 ORTHO05D008002 8.5e-06 55.5 175 25.7


User provided reference genes

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