Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0171141 Rosa chinensis HOM05D003936 ORTHO05D004747 1.1e-52 209.5 98 100.0
FAN05G0608 Fragaria x ananassa HOM05D003936 ORTHO05D004747 1.5e-20 102.8 65 81.5
FvH4_6g28960 Fragaria vesca HOM05D003936 ORTHO05D004747 9.7e-20 100.1 63 79.4
FAN02G3242 Fragaria x ananassa HOM05D003936 ORTHO05D004747 9.7e-20 100.1 63 79.4
FAN05G1488 Fragaria x ananassa HOM05D003936 ORTHO05D004747 9.7e-20 100.1 63 79.4
FAN09G0504 Fragaria x ananassa HOM05D003936 ORTHO05D004747 9.7e-20 100.1 63 79.4
FAN14G5707 Fragaria x ananassa HOM05D003936 ORTHO05D004747 9.7e-20 100.1 63 79.4
RcHm_v2.0_Chr4g0407691 Rosa chinensis HOM05D003936 ORTHO05D004747 9.7e-20 100.1 63 79.4
RcHm_v2.0_Chr6g0246971 Rosa chinensis HOM05D003936 ORTHO05D004747 1.3e-19 99.8 63 77.8
RcHm_v2.0_Chr2g0133511 Rosa chinensis HOM05D003936 ORTHO05D004747 2.2e-19 99.0 60 83.3
QL05p034110 Quercus lobata HOM05D003936 ORTHO05D004747 2.8e-19 98.6 62 79.0
QL08p064442 Quercus lobata HOM05D003936 ORTHO05D004747 2.8e-19 98.6 62 79.0
MD17G1219800 Malus domestica HOM05D003936 ORTHO05D004747 8.2e-19 97.1 55 89.1
RcHm_v2.0_Chr2g0145231 Rosa chinensis HOM05D003936 ORTHO05D004747 1.1e-18 96.7 55 87.3
Atru.chr10.2382 Acer truncatum HOM05D003936 ORTHO05D004747 1.8e-18 95.9 55 87.3
GSVIVG01026722001 Vitis vinifera HOM05D003936 ORTHO05D004747 4.1e-18 94.7 62 77.4
GSVIVG01026738001 Vitis vinifera HOM05D003936 ORTHO05D004747 4.1e-18 94.7 62 77.4
Nitab4.5_0000114g0150 Nicotiana tabacum HOM05D003936 ORTHO05D004747 7.0e-18 94.0 55 85.5
Ciclev10025627m.g Citrus clementina HOM05D003936 ORTHO05D004747 1.6e-17 92.8 55 83.6
PGR102G1525 Punica granatum HOM05D003936 ORTHO05D004747 1.6e-17 92.8 65 70.8
BcaC07g41479 Brassica carinata HOM05D003936 ORTHO05D004747 2.0e-17 92.4 66 72.7
Duzib212G0318 Durio zibethinus HOM05D003936 ORTHO05D004747 2.0e-17 92.4 55 85.5
MBI14_g15650_MAGBIO Magnolia biondii HOM05D003936 ORTHO05D004747 2.0e-17 92.4 55 85.5
Prupe.3G095300 Prunus persica HOM05D003936 ORTHO05D004747 2.0e-17 92.4 55 83.6
vmacro19035 Vaccinium macrocarpon HOM05D003936 ORTHO05D004747 2.0e-17 92.4 55 83.6
Cfa001907 Carpinus fangiana HOM05D003936 ORTHO05D004747 2.6e-17 92.0 62 75.8
Aqoxy7G03521 Aquilegia oxysepala HOM05D003936 ORTHO05D004747 3.5e-17 91.7 55 83.6
Gohir.A06G183700 Gossypium hirsutum HOM05D003936 ORTHO05D004747 3.5e-17 91.7 60 76.7
SalBow6G1756 Salvia bowleyana HOM05D003936 ORTHO05D004747 3.5e-17 91.7 55 83.6
SalBow6G6295 Salvia bowleyana HOM05D003936 ORTHO05D004747 3.5e-17 91.7 55 83.6
Sopen08g002790 Solanum pennellii HOM05D003936 ORTHO05D004747 3.5e-17 91.7 55 83.6
Solyc08g006840.3 Solanum lycopersicum HOM05D003936 ORTHO05D004747 4.5e-17 91.3 55 83.6
Actinidia18230 Actinidia chinensis HOM05D003936 ORTHO05D004747 5.9e-17 90.9 55 81.8
Actinidia25443 Actinidia chinensis HOM05D003936 ORTHO05D004747 5.9e-17 90.9 55 81.8
AL1040U10010 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 5.9e-17 90.9 55 83.6
AL2G40830 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 5.9e-17 90.9 55 83.6
AT1G80620 Arabidopsis thaliana HOM05D003936 ORTHO05D004747 5.9e-17 90.9 55 83.6
A09p61160 Brassica napus HOM05D003936 ORTHO05D004747 5.9e-17 90.9 60 75.0
C08p44760 Brassica napus HOM05D003936 ORTHO05D004747 5.9e-17 90.9 60 75.0
BraA09t41490Z Brassica rapa HOM05D003936 ORTHO05D004747 5.9e-17 90.9 60 75.0
Carub.0002s2693 Capsella rubella HOM05D003936 ORTHO05D004747 5.9e-17 90.9 55 83.6
CiPaw.01G252100 Carya illinoinensis HOM05D003936 ORTHO05D004747 5.9e-17 90.9 62 75.8
Eucgr.F03943 Eucalyptus grandis HOM05D003936 ORTHO05D004747 5.9e-17 90.9 55 83.6
Thhalv10018593m.g Eutrema salsugineum HOM05D003936 ORTHO05D004747 5.9e-17 90.9 55 83.6
Sp5g35150 Schrenkiella parvula HOM05D003936 ORTHO05D004747 5.9e-17 90.9 55 83.6
Thecc.06G036500 Theobroma cacao HOM05D003936 ORTHO05D004747 5.9e-17 90.9 55 83.6
ATR0584G049 Amborella trichopoda HOM05D003936 ORTHO05D004747 7.7e-17 90.5 60 76.7
Cc04_g04830 Coffea canephora HOM05D003936 ORTHO05D004747 7.7e-17 90.5 62 71.0
Dinv23312 Davidia involucrata HOM05D003936 ORTHO05D004747 7.7e-17 90.5 55 81.8
Gohir.D06G190700 Gossypium hirsutum HOM05D003936 ORTHO05D004747 7.7e-17 90.5 60 76.7
Gorai.010G223800 Gossypium raimondii HOM05D003936 ORTHO05D004747 7.7e-17 90.5 60 76.7
Peaxi162Scf00045g02127 Petunia axillaris HOM05D003936 ORTHO05D004747 1.0e-16 90.1 55 81.8
Sp1g14110 Schrenkiella parvula HOM05D003936 ORTHO05D004747 1.0e-16 90.1 56 80.4
vmacro17364 Vaccinium macrocarpon HOM05D003936 ORTHO05D004747 1.0e-16 90.1 55 81.8
A06p11880 Brassica napus HOM05D003936 ORTHO05D004747 1.3e-16 89.7 56 80.4
C05p14060 Brassica napus HOM05D003936 ORTHO05D004747 1.3e-16 89.7 56 80.4
BolC5t30137H Brassica oleracea HOM05D003936 ORTHO05D004747 1.3e-16 89.7 56 80.4
BolC8t52022H Brassica oleracea HOM05D003936 ORTHO05D004747 1.3e-16 89.7 60 75.0
BraA06t24358Z Brassica rapa HOM05D003936 ORTHO05D004747 1.3e-16 89.7 56 80.4
CARHR073900 Cardamine hirsuta HOM05D003936 ORTHO05D004747 1.3e-16 89.7 55 81.8
Hma1.2p1_0135F.1_g061770 Hydrangea macrophylla HOM05D003936 ORTHO05D004747 1.3e-16 89.7 62 72.6
Nn2g12258 Nelumbo nucifera HOM05D003936 ORTHO05D004747 1.3e-16 89.7 55 81.8
ECA232G5052 Erigeron canadensis HOM05D003936 ORTHO05D004747 1.7e-16 89.4 55 78.2
Thhalv10007635m.g Eutrema salsugineum HOM05D003936 ORTHO05D004747 1.7e-16 89.4 55 81.8
Lsat_1_v5_gn_8_9281 Lactuca sativa HOM05D003936 ORTHO05D004747 1.7e-16 89.4 55 80.0
TAR636G3155 Trochodendron aralioides HOM05D003936 ORTHO05D004747 1.7e-16 89.4 55 81.8
arahy.Tifrunner.gnm1.ann1.17KRJ7 Arachis hypogaea HOM05D003936 ORTHO05D004747 2.2e-16 89.0 63 71.4
arahy.Tifrunner.gnm1.ann1.6RSI2J Arachis hypogaea HOM05D003936 ORTHO05D004747 2.2e-16 89.0 63 71.4
BcaB05g25240 Brassica carinata HOM05D003936 ORTHO05D004747 2.2e-16 89.0 55 81.8
BcaC03g15942 Brassica carinata HOM05D003936 ORTHO05D004747 2.2e-16 89.0 55 81.8
A02p23300 Brassica napus HOM05D003936 ORTHO05D004747 2.2e-16 89.0 55 81.8
A07p45080 Brassica napus HOM05D003936 ORTHO05D004747 2.2e-16 89.0 55 81.8
C02p37040 Brassica napus HOM05D003936 ORTHO05D004747 2.2e-16 89.0 55 81.8
C06p53910 Brassica napus HOM05D003936 ORTHO05D004747 2.2e-16 89.0 55 81.8
BolC2t09719H Brassica oleracea HOM05D003936 ORTHO05D004747 2.2e-16 89.0 55 81.8
BolC6t40405H Brassica oleracea HOM05D003936 ORTHO05D004747 2.2e-16 89.0 55 81.8
BraA02t07326Z Brassica rapa HOM05D003936 ORTHO05D004747 2.2e-16 89.0 55 81.8
BraA07t32011Z Brassica rapa HOM05D003936 ORTHO05D004747 2.2e-16 89.0 55 81.8
DCAR_016286 Daucus carota HOM05D003936 ORTHO05D004747 2.2e-16 89.0 55 80.0
Rhsim08G0208400 Rhododendron simsii HOM05D003936 ORTHO05D004747 2.2e-16 89.0 55 81.8
arahy.Tifrunner.gnm1.ann1.ZV9XE5 Arachis hypogaea HOM05D003936 ORTHO05D004747 2.9e-16 88.6 55 81.8
CARHR016320 Cardamine hirsuta HOM05D003936 ORTHO05D004747 2.9e-16 88.6 56 78.6
Cpa.g.sc10.123 Carica papaya HOM05D003936 ORTHO05D004747 2.9e-16 88.6 55 78.2
Lj2A141T58 Lonicera japonica HOM05D003936 ORTHO05D004747 2.9e-16 88.6 55 80.0
Lj9A496T67 Lonicera japonica HOM05D003936 ORTHO05D004747 2.9e-16 88.6 55 80.0
Os06g0176150 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 2.9e-16 88.6 55 80.0
Os06g0177250 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 2.9e-16 88.6 55 80.0
Phvul.010G158900 Phaseolus vulgaris HOM05D003936 ORTHO05D004747 2.9e-16 88.6 67 67.2
unitig_27.g24954 Utricularia gibba HOM05D003936 ORTHO05D004747 2.9e-16 88.6 65 69.2
MSTRG.11168 Avicennia marina HOM05D003936 ORTHO05D004747 3.8e-16 88.2 63 71.4
CSS0006918 Camellia sinensis var. sinensis HOM05D003936 ORTHO05D004747 3.8e-16 88.2 62 72.6
AL1G27960 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 5.0e-16 87.8 56 78.6
AT1G15810 Arabidopsis thaliana HOM05D003936 ORTHO05D004747 5.0e-16 87.8 56 78.6
BcaB05g25239 Brassica carinata HOM05D003936 ORTHO05D004747 5.0e-16 87.8 55 80.0
Carub.0001s1560 Capsella rubella HOM05D003936 ORTHO05D004747 5.0e-16 87.8 56 78.6
HanXRQChr16g0500031 Helianthus annuus HOM05D003936 ORTHO05D004747 5.0e-16 87.8 55 78.2
HPP92_027846 Vanilla planifolia HOM05D003936 ORTHO05D004747 5.0e-16 87.8 54 79.6
arahy.Tifrunner.gnm1.ann1.9YJ9LX Arachis hypogaea HOM05D003936 ORTHO05D004747 6.5e-16 87.4 55 80.0
CANSAT11G1020 Cannabis sativa HOM05D003936 ORTHO05D004747 6.5e-16 87.4 55 78.2
Os02g0803200 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 6.5e-16 87.4 55 78.2
Zm00001eb192140 Zea mays HOM05D003936 ORTHO05D004747 6.5e-16 87.4 55 78.2
Glyma.07G026400 Glycine max HOM05D003936 ORTHO05D004747 8.5e-16 87.0 55 78.2
TWI12G0163 Tripterygium wilfordii HOM05D003936 ORTHO05D004747 8.5e-16 87.0 68 67.6
Aa31LG4G900 Aethionema arabicum HOM05D003936 ORTHO05D004747 1.1e-15 86.7 55 80.0
PSO210G7358 Papaver somniferum HOM05D003936 ORTHO05D004747 1.1e-15 86.7 55 78.2
PSO478G0782 Papaver somniferum HOM05D003936 ORTHO05D004747 1.1e-15 86.7 55 78.2
PSO782G4560 Papaver somniferum HOM05D003936 ORTHO05D004747 1.1e-15 86.7 55 78.2
VMungo0331G1494 Vigna mungo HOM05D003936 ORTHO05D004747 1.1e-15 86.7 55 78.2
Oeu029910.1 Olea europaea HOM05D003936 ORTHO05D004747 1.5e-15 86.3 58 72.4
Ca_29510_v3 Cicer arietinum L. HOM05D003936 ORTHO05D004747 1.9e-15 85.9 55 78.2
Potri.003G178800 Populus trichocarpa HOM05D003936 ORTHO05D004747 1.9e-15 85.9 68 67.6
Sed0007390 Sechium edule HOM05D003936 ORTHO05D004747 1.9e-15 85.9 55 78.2
Sed0026159 Sechium edule HOM05D003936 ORTHO05D004747 2.5e-15 85.5 55 78.2
Migut.I00724 Erythranthe guttata HOM05D003936 ORTHO05D004747 3.2e-15 85.1 63 69.8
Lj3g0027357 Lotus japonicus HOM05D003936 ORTHO05D004747 3.2e-15 85.1 55 78.2
Hund00590 Selenicereus undatus HOM05D003936 ORTHO05D004747 3.2e-15 85.1 55 78.2
Lalb_Chr25g0279171 Lupinus albus HOM05D003936 ORTHO05D004747 4.2e-15 84.7 55 78.2
Medtr4g009100 Medicago truncatula HOM05D003936 ORTHO05D004747 5.5e-15 84.3 55 78.2
TPR.G29720 Trifolium pratense HOM05D003936 ORTHO05D004747 7.2e-15 84.0 55 76.4
MELO3C017854.2 Cucumis melo HOM05D003936 ORTHO05D004747 9.4e-15 83.6 55 74.5
Psat7g258560 Pisum sativum HOM05D003936 ORTHO05D004747 9.4e-15 83.6 55 76.4
CDE02G1505 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 1.2e-14 83.2 55 78.2
AUR62011450 Chenopodium quinoa HOM05D003936 ORTHO05D004747 1.2e-14 83.2 55 72.7
AUR62016607 Chenopodium quinoa HOM05D003936 ORTHO05D004747 1.2e-14 83.2 55 72.7
CsaV3_4G001790 Cucumis sativus L. HOM05D003936 ORTHO05D004747 2.1e-14 82.4 55 72.7
CDE09G1350 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 2.7e-14 82.0 55 76.4
THA.LOC104812450 Tarenaya hassleriana HOM05D003936 ORTHO05D004747 3.6e-14 81.6 55 70.9
Ah.02g127880 Amaranthus hybridus HOM05D003936 ORTHO05D004747 1.8e-13 79.3 55 70.9
EL10Ac9g21843 Beta vulgaris HOM05D003936 ORTHO05D004747 5.2e-13 77.8 55 70.9
ClCG07G012350 Citrullus lanatus HOM05D003936 ORTHO05D004747 4.4e-12 74.7 68 60.3
SHI11258 Sapria himalayana HOM05D003936 ORTHO05D004747 5.7e-12 74.3 75 57.3
SGA_v2.0_scaffold5G02746 Striga asiatica HOM05D003936 ORTHO05D004747 7.5e-12 73.9 66 57.6
COL.COLO4_11826 Corchorus olitorius HOM05D003936 ORTHO05D004747 1.4e-10 69.7 96 46.9
Pp3c1_21620 Physcomitrium patens HOM05D003936 ORTHO05D004747 1.2e-09 66.6 67 47.8
Sabra03G0131100 Salix brachista HOM05D003936 ORTHO05D004747 3.5e-09 65.1 111 41.4
MD09G1223400 Malus domestica HOM05D003936 ORTHO05D004747 5.9e-09 64.3 37 83.8
Mapoly0065s0028 Marchantia polymorpha HOM05D003936 ORTHO05D004747 5.9e-09 64.3 57 57.9
Nitab4.5_0009138g0020 Nicotiana tabacum HOM05D003936 ORTHO05D004747 3.8e-08 61.6 59 52.5


User provided reference genes

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