Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0170951 Rosa chinensis HOM05D003549 ORTHO05D004223 3.0e-26 121.3 73 100.0
FAN02G2804 Fragaria x ananassa HOM05D003549 ORTHO05D004223 4.9e-24 114.0 73 93.2
FAN05G0330 Fragaria x ananassa HOM05D003549 ORTHO05D004223 4.9e-24 114.0 73 93.2
FAN09G2996 Fragaria x ananassa HOM05D003549 ORTHO05D004223 4.9e-24 114.0 73 93.2
FAN09G4496 Fragaria x ananassa HOM05D003549 ORTHO05D004223 4.9e-24 114.0 73 93.2
FvH4_6g50520 Fragaria vesca HOM05D003549 ORTHO05D004223 1.1e-23 112.8 73 93.2
FAN14G1319 Fragaria x ananassa HOM05D003549 ORTHO05D004223 1.1e-23 112.8 73 93.2
Prupe.3G282400 Prunus persica HOM05D003549 ORTHO05D004223 6.6e-21 103.6 72 84.7
Dinv33505 Davidia involucrata HOM05D003549 ORTHO05D004223 7.2e-20 100.1 72 72.2
QL02p076964 Quercus lobata HOM05D003549 ORTHO05D004223 9.5e-20 99.8 72 77.8
GSVIVG01032498001 Vitis vinifera HOM05D003549 ORTHO05D004223 4.7e-19 97.4 72 76.4
Glyma.14G134200 Glycine max HOM05D003549 ORTHO05D004223 1.2e-17 92.8 72 75.0
Phvul.001G059000 Phaseolus vulgaris HOM05D003549 ORTHO05D004223 1.2e-17 92.8 72 73.6
Glyma.04G181200 Glycine max HOM05D003549 ORTHO05D004223 1.5e-17 92.4 72 76.4
Glyma.17G198800 Glycine max HOM05D003549 ORTHO05D004223 3.4e-17 91.3 70 74.3
Nn8g39923 Nelumbo nucifera HOM05D003549 ORTHO05D004223 3.4e-17 91.3 72 69.4
MBI15_g31119_MAGBIO Magnolia biondii HOM05D003549 ORTHO05D004223 4.4e-17 90.9 72 76.4
Oeu000929.1 Olea europaea HOM05D003549 ORTHO05D004223 4.4e-17 90.9 67 82.1
Lj6g0023924 Lotus japonicus HOM05D003549 ORTHO05D004223 9.8e-17 89.7 72 70.8
Rhsim12G0163400 Rhododendron simsii HOM05D003549 ORTHO05D004223 9.8e-17 89.7 72 61.1
Ca_16195_v3 Cicer arietinum L. HOM05D003549 ORTHO05D004223 1.3e-16 89.4 72 69.4
Glyma.06G183700 Glycine max HOM05D003549 ORTHO05D004223 1.3e-16 89.4 72 73.6
Psat5g114160 Pisum sativum HOM05D003549 ORTHO05D004223 1.3e-16 89.4 72 73.6
Ciclev10017382m.g Citrus clementina HOM05D003549 ORTHO05D004223 1.7e-16 89.0 72 76.4
Dinv09155 Davidia involucrata HOM05D003549 ORTHO05D004223 1.7e-16 89.0 72 73.6
Haze_07495 Corylus avellana HOM05D003549 ORTHO05D004223 2.2e-16 88.6 72 72.2
CiPaw.11G028500 Carya illinoinensis HOM05D003549 ORTHO05D004223 2.8e-16 88.2 72 69.4
Cc04_g12860 Coffea canephora HOM05D003549 ORTHO05D004223 2.8e-16 88.2 67 73.1
DCAR_021678 Daucus carota HOM05D003549 ORTHO05D004223 2.8e-16 88.2 69 78.3
Hma1.2p1_0176F.1_g077660 Hydrangea macrophylla HOM05D003549 ORTHO05D004223 2.8e-16 88.2 72 73.6
PSO017G2368 Papaver somniferum HOM05D003549 ORTHO05D004223 2.8e-16 88.2 72 69.4
CsaV3_1G008390 Cucumis sativus L. HOM05D003549 ORTHO05D004223 3.7e-16 87.8 72 73.6
Lj1g0007079 Lotus japonicus HOM05D003549 ORTHO05D004223 3.7e-16 87.8 72 70.8
PSO478G4862 Papaver somniferum HOM05D003549 ORTHO05D004223 3.7e-16 87.8 72 69.4
Peaxi162Scf00017g02716 Petunia axillaris HOM05D003549 ORTHO05D004223 3.7e-16 87.8 67 73.1
Nn2g12408 Nelumbo nucifera HOM05D003549 ORTHO05D004223 4.9e-16 87.4 72 79.2
Phvul.009G179900 Phaseolus vulgaris HOM05D003549 ORTHO05D004223 4.9e-16 87.4 72 70.8
Potri.017G066900 Populus trichocarpa HOM05D003549 ORTHO05D004223 4.9e-16 87.4 72 76.4
Actinidia19094 Actinidia chinensis HOM05D003549 ORTHO05D004223 6.3e-16 87.0 72 75.0
Actinidia33056 Actinidia chinensis HOM05D000215 ORTHO05D003454 8.3e-16 86.7 72 73.6
CiPaw.12G025200 Carya illinoinensis HOM05D003549 ORTHO05D004223 1.1e-15 86.3 72 63.9
Medtr3g078130 Medicago truncatula HOM05D003549 ORTHO05D004223 1.1e-15 86.3 72 73.6
Nitab4.5_0000852g0140 Nicotiana tabacum HOM05D003549 ORTHO05D004223 1.1e-15 86.3 67 71.6
Nitab4.5_0003857g0060 Nicotiana tabacum HOM05D003549 ORTHO05D004223 1.1e-15 86.3 67 71.6
Potri.001G334600 Populus trichocarpa HOM05D003549 ORTHO05D004223 1.1e-15 86.3 72 77.8
ClCG01G013030 Citrullus lanatus HOM05D003549 ORTHO05D004223 1.4e-15 85.9 72 72.2
HanXRQChr16g0517241 Helianthus annuus HOM05D003549 ORTHO05D004223 1.4e-15 85.9 67 77.6
Lalb_Chr08g0236401 Lupinus albus HOM05D003549 ORTHO05D004223 1.4e-15 85.9 72 69.4
CAN.G628.73 Capsicum annuum HOM05D003549 ORTHO05D004223 1.8e-15 85.5 67 80.6
TAR622G0024 Trochodendron aralioides HOM05D003549 ORTHO05D004223 1.8e-15 85.5 72 72.2
TAR622G1417 Trochodendron aralioides HOM05D003549 ORTHO05D004223 1.8e-15 85.5 72 72.2
Actinidia04982 Actinidia chinensis HOM05D000215 ORTHO05D003454 2.4e-15 85.1 72 72.2
CANSAT64G1109 Cannabis sativa HOM05D003549 ORTHO05D004223 2.4e-15 85.1 72 76.4
TAR629G2438 Trochodendron aralioides HOM05D003549 ORTHO05D004223 3.2e-15 84.7 72 61.1
HPP92_002194 Vanilla planifolia HOM05D003549 ORTHO05D004223 3.2e-15 84.7 64 84.4
CSS0022405 Camellia sinensis var. sinensis HOM05D003549 ORTHO05D004223 4.1e-15 84.3 72 73.6
PSO832G2372 Papaver somniferum HOM05D003549 ORTHO05D004223 4.1e-15 84.3 69 68.1
PGSC0003DMG400027096 Solanum tuberosum HOM05D003549 ORTHO05D004223 4.1e-15 84.3 67 80.6
Duzib205G0517 Durio zibethinus HOM05D003549 ORTHO05D004223 5.4e-15 84.0 67 70.1
FAN04G1549 Fragaria x ananassa HOM05D003549 ORTHO05D004223 5.4e-15 84.0 69 71.0
FAN08G2999 Fragaria x ananassa HOM05D003549 ORTHO05D004223 5.4e-15 84.0 69 71.0
FAN13G2761 Fragaria x ananassa HOM05D003549 ORTHO05D004223 5.4e-15 84.0 69 71.0
PSO063G4497 Papaver somniferum HOM05D003549 ORTHO05D004223 5.4e-15 84.0 69 65.2
arahy.Tifrunner.gnm1.ann1.G4GSC6 Arachis hypogaea HOM05D003549 ORTHO05D004223 7.0e-15 83.6 72 73.6
arahy.Tifrunner.gnm1.ann1.TT1NYY Arachis hypogaea HOM05D003549 ORTHO05D004223 7.0e-15 83.6 72 73.6
Migut.D01775 Erythranthe guttata HOM05D003549 ORTHO05D004223 7.0e-15 83.6 67 76.1
RcHm_v2.0_Chr7g0193821 Rosa chinensis HOM05D003549 ORTHO05D004223 7.0e-15 83.6 69 69.6
Solyc06g071390.3 Solanum lycopersicum HOM05D003549 ORTHO05D004223 7.0e-15 83.6 67 79.1
Sopen06g027670 Solanum pennellii HOM05D003549 ORTHO05D004223 7.0e-15 83.6 67 79.1
MD14G1183200 Malus domestica HOM05D003549 ORTHO05D004223 9.2e-15 83.2 72 70.8
MD06G1177000 Malus domestica HOM05D003549 ORTHO05D004223 1.2e-14 82.8 72 68.1
Ciclev10023184m.g Citrus clementina HOM05D003549 ORTHO05D004223 1.6e-14 82.4 72 70.8
FvH4_5g05150 Fragaria vesca HOM05D003549 ORTHO05D004223 1.6e-14 82.4 69 71.0
FAN18G4010 Fragaria x ananassa HOM05D003549 ORTHO05D004223 1.6e-14 82.4 69 71.0
Aqoxy3G00995 Aquilegia oxysepala HOM05D003549 ORTHO05D004223 2.0e-14 82.0 74 62.2
Lsat_1_v5_gn_4_74920 Lactuca sativa HOM05D003549 ORTHO05D004223 2.0e-14 82.0 67 70.1
RcHm_v2.0_Chr7g0184521 Rosa chinensis HOM05D003549 ORTHO05D004223 2.7e-14 81.6 69 68.1
Hma1.2p1_0802F.1_g220520 Hydrangea macrophylla HOM05D003549 ORTHO05D004223 3.5e-14 81.3 70 62.9
PGSC0003DMG400024492 Solanum tuberosum HOM05D003549 ORTHO05D004223 3.5e-14 81.3 67 70.1
Hund03159 Selenicereus undatus HOM05D003549 ORTHO05D004223 4.6e-14 80.9 66 74.2
THA.LOC104805767 Tarenaya hassleriana HOM05D003549 ORTHO05D004223 4.6e-14 80.9 70 72.9
TAR371G0468 Trochodendron aralioides HOM05D003549 ORTHO05D004223 4.6e-14 80.9 72 73.6
Aa31LG2G1940 Aethionema arabicum HOM05D003549 ORTHO05D004223 7.8e-14 80.1 72 72.2
Prupe.5G175700 Prunus persica HOM05D003549 ORTHO05D004223 7.8e-14 80.1 72 69.4
THA.LOC104823782 Tarenaya hassleriana HOM05D003549 ORTHO05D004223 7.8e-14 80.1 73 72.6
TWI81G0050 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 7.8e-14 80.1 72 61.1
TWI81G1057 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 7.8e-14 80.1 72 61.1
ECA232G0606 Erigeron canadensis HOM05D003549 ORTHO05D004223 1.0e-13 79.7 77 63.6
Gohir.A07G060300 Gossypium hirsutum HOM05D003549 ORTHO05D004223 1.0e-13 79.7 65 75.4
Solyc03g114170.3 Solanum lycopersicum HOM05D003549 ORTHO05D004223 1.0e-13 79.7 67 68.7
Thecc.03G009800 Theobroma cacao HOM05D003549 ORTHO05D004223 1.0e-13 79.7 67 74.6
TPR.G30392 Trifolium pratense HOM05D003549 ORTHO05D004223 1.0e-13 79.7 80 67.5
SalBow2G1727 Salvia bowleyana HOM05D003549 ORTHO05D004223 1.3e-13 79.3 67 61.2
TWI15G0885 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 1.7e-13 79.0 72 59.7
Zm00001eb332940 Zea mays HOM05D003549 ORTHO05D004223 2.9e-13 78.2 64 68.8
ClCG08G009420 Citrullus lanatus HOM05D003549 ORTHO05D004223 3.9e-13 77.8 72 72.2
MELO3C026538.2 Cucumis melo HOM05D003549 ORTHO05D004223 3.9e-13 77.8 72 72.2
CsaV3_6G031560 Cucumis sativus L. HOM05D003549 ORTHO05D004223 3.9e-13 77.8 72 72.2
Sed0023520 Sechium edule HOM05D003549 ORTHO05D004223 3.9e-13 77.8 72 69.4
Cpa.g.sc1914.1 Carica papaya HOM05D003549 ORTHO05D004223 5.0e-13 77.4 46 80.4
Sed0001837 Sechium edule HOM05D003549 ORTHO05D004223 5.0e-13 77.4 72 59.7
BcaB03g15337 Brassica carinata HOM05D003549 ORTHO05D004223 6.6e-13 77.0 68 66.2
Duzib084G0774 Durio zibethinus HOM05D003549 ORTHO05D004223 8.6e-13 76.6 67 67.2
ECA246G5096 Erigeron canadensis HOM05D003549 ORTHO05D004223 8.6e-13 76.6 68 72.1
Manes.14G067300 Manihot esculenta HOM05D003549 ORTHO05D004223 8.6e-13 76.6 74 70.3
Sopen03g033240 Solanum pennellii HOM05D003549 ORTHO05D004223 8.6e-13 76.6 67 65.7
TWI60G0590 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 1.1e-12 76.3 72 58.3
Peaxi162Scf00535g00046 Petunia axillaris HOM05D003549 ORTHO05D004223 1.9e-12 75.5 70 58.6
THA.LOC109116495 Tarenaya hassleriana HOM05D003549 ORTHO05D004223 2.5e-12 75.1 72 59.7
Sp5g19250 Schrenkiella parvula HOM05D003549 ORTHO05D004223 4.3e-12 74.3 72 69.4
SGA_v2.0_scaffold90G27958 Striga asiatica HOM05D000215 ORTHO05D003454 4.3e-12 74.3 67 56.7
A07p32720 Brassica napus HOM05D003549 ORTHO05D004223 5.6e-12 73.9 70 67.1
C06p38930 Brassica napus HOM05D003549 ORTHO05D004223 5.6e-12 73.9 70 67.1
BolC6t38985H Brassica oleracea HOM05D003549 ORTHO05D004223 5.6e-12 73.9 70 67.1
BraA07t30898Z Brassica rapa HOM05D003549 ORTHO05D004223 5.6e-12 73.9 70 67.1
CARHR049490 Cardamine hirsuta HOM05D003549 ORTHO05D004223 5.6e-12 73.9 72 70.8
SalBow5G5409 Salvia bowleyana HOM05D003549 ORTHO05D004223 5.6e-12 73.9 68 69.1
Aqoxy3G02997 Aquilegia oxysepala HOM05D003549 ORTHO05D004223 7.3e-12 73.6 70 70.0
Manes.06G103400 Manihot esculenta HOM05D003549 ORTHO05D004223 1.2e-11 72.8 47 76.6
Hma1.2p1_0967F.1_g242260 Hydrangea macrophylla HOM05D003549 ORTHO05D004223 1.6e-11 72.4 82 53.7
Atru.chr9.2446 Acer truncatum HOM05D003549 ORTHO05D004223 2.1e-11 72.0 48 70.8
Thhalv10022469m.g Eutrema salsugineum HOM05D003549 ORTHO05D004223 2.1e-11 72.0 70 70.0
Sc04g0001880 Simmondsia chinensis HOM05D003549 ORTHO05D004223 3.6e-11 71.2 71 64.8
Cpa.g.sc124.38 Carica papaya HOM05D003549 ORTHO05D004223 6.1e-11 70.5 73 69.9
Aqoxy3G00999 Aquilegia oxysepala HOM05D003549 ORTHO05D004223 8.0e-11 70.1 74 64.9
unitig_26.g9627 Utricularia gibba HOM05D000915 ORTHO05D001662 1.0e-10 69.7 68 63.2
ECA247G2394 Erigeron canadensis HOM05D003549 ORTHO05D004223 1.4e-10 69.3 63 71.4
Os01g0273000 Oryza sativa ssp. japonica HOM05D003549 ORTHO05D004223 2.3e-10 68.6 64 65.6
Peaxi162Scf00689g00329 Petunia axillaris HOM05D003549 ORTHO05D004223 2.3e-10 68.6 67 68.7
CAN.G781.29 Capsicum annuum HOM05D003549 ORTHO05D004223 3.1e-10 68.2 67 67.2
BcaB05g23601 Brassica carinata HOM05D003549 ORTHO05D004223 4.0e-10 67.8 69 58.0
Rhsim08G0170600 Rhododendron simsii HOM05D003549 ORTHO05D004223 4.0e-10 67.8 72 54.2
AL8G14410 Arabidopsis lyrata HOM05D003549 ORTHO05D004223 1.2e-09 66.2 72 68.1
SMO139G0002 Selaginella moellendorffii HOM05D003549 ORTHO05D004223 1.2e-09 66.2 70 62.9
CAN.G208.13 Capsicum annuum HOM05D003549 ORTHO05D004223 3.4e-09 64.7 43 74.4
COL.COLO4_34052 Corchorus olitorius HOM05D003549 ORTHO05D004223 3.4e-09 64.7 67 70.1
HanXRQChr02g0037231 Helianthus annuus HOM05D003549 ORTHO05D004223 3.4e-09 64.7 67 68.7
SMO145G0027 Selaginella moellendorffii HOM05D003549 ORTHO05D004223 3.4e-09 64.7 67 64.2
A02p23950 Brassica napus HOM05D003549 ORTHO05D004223 4.4e-09 64.3 70 71.4
DCAR_021565 Daucus carota HOM05D003549 ORTHO05D004223 4.4e-09 64.3 71 62.0
Mapoly0025s0126 Marchantia polymorpha HOM05D003549 ORTHO05D004223 7.5e-09 63.5 67 56.7
PGR083G2145 Punica granatum HOM05D003549 ORTHO05D004223 7.5e-09 63.5 72 62.5
AL2G18990 Arabidopsis lyrata HOM05D003549 ORTHO05D004223 9.8e-09 63.2 73 65.8
Eucgr.K02857 Eucalyptus grandis HOM05D003549 ORTHO05D004223 9.8e-09 63.2 68 67.6
Sc12g0005420 Simmondsia chinensis HOM05D003549 ORTHO05D004223 9.8e-09 63.2 64 68.8
Lsat_1_v5_gn_1_26640 Lactuca sativa HOM05D000122 ORTHO05D004223 2.9e-08 61.6 67 65.7
CAN.G650.26 Capsicum annuum HOM05D003549 ORTHO05D004223 3.7e-08 61.2 46 67.4
CDE10G0156 Ceratophyllum demersum HOM05D003549 ORTHO05D004223 3.7e-08 61.2 70 58.6
Lalb_Chr11g0071151 Lupinus albus HOM05D003549 ORTHO05D004223 3.7e-08 61.2 72 61.1
C02p37800 Brassica napus HOM05D003549 ORTHO05D004223 4.9e-08 60.8 70 68.6
BolC2t09796H Brassica oleracea HOM05D003549 ORTHO05D004223 4.9e-08 60.8 70 55.7
Duzib068G0952 Durio zibethinus HOM05D003549 ORTHO05D004223 6.4e-08 60.5 73 60.3
TPR.G37556 Trifolium pratense HOM05D003549 ORTHO05D004223 6.4e-08 60.5 64 65.6
AUR62036487 Chenopodium quinoa HOM05D003549 ORTHO05D004223 8.3e-08 60.1 69 62.3
Hund12012 Selenicereus undatus HOM05D003549 ORTHO05D004223 1.9e-07 58.9 69 62.3
AT5G45010 Arabidopsis thaliana HOM05D003549 ORTHO05D004223 3.2e-07 58.2 48 66.7
CBR_g8660 Chara braunii HOM05D003549 ORTHO05D004223 3.2e-07 58.2 60 61.7
Gohir.D12G274100 Gossypium hirsutum HOM05D003549 ORTHO05D004223 4.1e-07 57.8 65 64.6
Gorai.008G294500 Gossypium raimondii HOM05D003549 ORTHO05D004223 4.1e-07 57.8 65 64.6
AUR62037088 Chenopodium quinoa HOM05D003549 ORTHO05D004223 5.4e-07 57.4 69 60.9
EL10Ac5g10777 Beta vulgaris HOM05D003549 ORTHO05D004223 7.0e-07 57.0 66 63.6
Carub.0003s3029 Capsella rubella HOM05D003549 ORTHO05D004223 7.0e-07 57.0 70 64.3
BraA02t07390Z Brassica rapa HOM05D003549 ORTHO05D004223 1.6e-06 55.8 86 55.8
CDE10G1218 Ceratophyllum demersum HOM05D003549 ORTHO05D004223 1.6e-06 55.8 66 54.5
Ah.13g075720 Amaranthus hybridus HOM05D003549 ORTHO05D004223 3.5e-06 54.7 67 59.7
ATR0752G058 Amborella trichopoda HOM05D003549 ORTHO05D004223 4.6e-06 54.3 72 55.6
AUR62008230 Chenopodium quinoa HOM05D003549 ORTHO05D004223 4.6e-06 54.3 69 58.0
HPP92_011135 Vanilla planifolia HOM05D003549 ORTHO05D004223 6.0e-06 53.9 108 38.9
Gohir.D07G065000 Gossypium hirsutum HOM05D003549 ORTHO05D004223 7.8e-06 53.5 43 67.4
Gorai.001G068500 Gossypium raimondii HOM05D003549 ORTHO05D004223 7.8e-06 53.5 43 67.4
QL10p012114 Quercus lobata HOM05D003549 ORTHO05D004223 7.8e-06 53.5 127 38.6


User provided reference genes

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