Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0170541 Rosa chinensis HOM05D005889 ORTHO05D007495 5.8e-23 110.2 60 100.0
RcHm_v2.0_Chr2g0170581 Rosa chinensis HOM05D005889 ORTHO05D007495 1.3e-19 99.0 63 90.5
FvH4_6g50270 Fragaria vesca HOM05D005889 ORTHO05D007495 1.1e-18 95.9 62 87.1
FAN14G2248 Fragaria x ananassa HOM05D005889 ORTHO05D007495 1.1e-18 95.9 62 87.1
FAN09G4317 Fragaria x ananassa HOM05D005889 ORTHO05D007495 1.9e-18 95.1 64 84.4
FAN02G1209 Fragaria x ananassa HOM05D005889 ORTHO05D007495 4.3e-18 94.0 64 82.8
FAN05G0142 Fragaria x ananassa HOM05D005889 ORTHO05D007495 4.3e-18 94.0 64 82.8
Prupe.3G279900 Prunus persica HOM05D005889 ORTHO05D007495 1.5e-15 85.5 62 80.6
MD17G1039100 Malus domestica HOM05D005889 ORTHO05D007495 9.8e-15 82.8 59 79.7
CSS0022009 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 4.9e-14 80.5 60 75.0
Thecc.04G004200 Theobroma cacao HOM05D005889 ORTHO05D007495 8.3e-14 79.7 63 73.0
BcaB01g05020 Brassica carinata HOM05D005889 ORTHO05D007495 1.4e-13 79.0 61 68.9
BcaB01g05094 Brassica carinata HOM05D005889 ORTHO05D007495 1.4e-13 79.0 61 68.9
DCAR_011198 Daucus carota HOM05D005889 ORTHO05D007495 1.4e-13 79.0 59 76.3
QL02p077702 Quercus lobata HOM05D005889 ORTHO05D007495 1.4e-13 79.0 60 76.7
Sp6g29140 Schrenkiella parvula HOM05D005889 ORTHO05D007495 1.4e-13 79.0 61 68.9
BcaNung05888 Brassica carinata HOM05D005889 ORTHO05D007495 1.9e-13 78.6 61 68.9
A02p02770 Brassica napus HOM05D005889 ORTHO05D007495 1.9e-13 78.6 61 68.9
C02p07380 Brassica napus HOM05D005889 ORTHO05D007495 1.9e-13 78.6 61 68.9
BolC2t06669H Brassica oleracea HOM05D005889 ORTHO05D007495 1.9e-13 78.6 61 68.9
BraA02t05248Z Brassica rapa HOM05D005889 ORTHO05D007495 1.9e-13 78.6 61 68.9
CARHR198430 Cardamine hirsuta HOM05D005889 ORTHO05D007495 1.9e-13 78.6 61 67.2
Hma1.2p1_0697F.1_g204970 Hydrangea macrophylla HOM05D005889 ORTHO05D007495 1.9e-13 78.6 59 76.3
Thhalv10014795m.g Eutrema salsugineum HOM05D005889 ORTHO05D007495 2.4e-13 78.2 61 68.9
BcaNung03088 Brassica carinata HOM05D005889 ORTHO05D007495 3.2e-13 77.8 61 67.2
Manes.17G118700 Manihot esculenta HOM05D005889 ORTHO05D007495 3.2e-13 77.8 62 72.6
GSVIVG01032527001 Vitis vinifera HOM05D005889 ORTHO05D007495 3.2e-13 77.8 60 73.3
MELO3C009927.2 Cucumis melo HOM05D005889 ORTHO05D007495 4.1e-13 77.4 62 67.7
PGR083G2278 Punica granatum HOM05D005889 ORTHO05D007495 4.1e-13 77.4 62 71.0
AT5G14910 Arabidopsis thaliana HOM05D005889 ORTHO05D007495 7.1e-13 76.6 61 65.6
Ciclev10012884m.g Citrus clementina HOM05D005889 ORTHO05D007495 7.1e-13 76.6 62 69.4
COL.COLO4_32001 Corchorus olitorius HOM05D005889 ORTHO05D007495 7.1e-13 76.6 61 70.5
Duzib147G1282 Durio zibethinus HOM05D005889 ORTHO05D007495 7.1e-13 76.6 61 67.2
THA.LOC104822380 Tarenaya hassleriana HOM05D005889 ORTHO05D007495 7.1e-13 76.6 61 68.9
Actinidia06039 Actinidia chinensis HOM05D005889 ORTHO05D007495 9.2e-13 76.3 60 70.0
Eucgr.J02175 Eucalyptus grandis HOM05D005889 ORTHO05D007495 9.2e-13 76.3 61 70.5
Gohir.D07G225400 Gossypium hirsutum HOM05D005889 ORTHO05D007495 9.2e-13 76.3 61 68.9
THA.LOC104821069 Tarenaya hassleriana HOM05D005889 ORTHO05D007495 9.2e-13 76.3 61 70.5
CiPaw.03G035200 Carya illinoinensis HOM05D005889 ORTHO05D007495 1.2e-12 75.9 56 78.6
Rhsim10G0026400 Rhododendron simsii HOM05D005889 ORTHO05D007495 1.2e-12 75.9 61 70.5
Rhsim10G0026900 Rhododendron simsii HOM05D005889 ORTHO05D007495 1.2e-12 75.9 61 70.5
Sabra16G0230000 Salix brachista HOM05D005889 ORTHO05D007495 1.2e-12 75.9 62 69.4
ClCG10G014500 Citrullus lanatus HOM05D005889 ORTHO05D007495 1.6e-12 75.5 62 67.7
Glyma.13G070100 Glycine max HOM05D005889 ORTHO05D007495 1.6e-12 75.5 62 67.7
Sed0023571 Sechium edule HOM05D005889 ORTHO05D007495 1.6e-12 75.5 62 67.7
A03p06840 Brassica napus HOM05D005889 ORTHO05D007495 2.1e-12 75.1 57 70.2
C03p07840 Brassica napus HOM05D005889 ORTHO05D007495 2.1e-12 75.1 57 70.2
BolC3t13283H Brassica oleracea HOM05D005889 ORTHO05D007495 2.1e-12 75.1 57 70.2
BraA03t10009Z Brassica rapa HOM05D005889 ORTHO05D007495 2.1e-12 75.1 57 70.2
Carub.0006s1306 Capsella rubella HOM05D005889 ORTHO05D007495 2.1e-12 75.1 57 70.2
Gorai.001G259800 Gossypium raimondii HOM05D005889 ORTHO05D007495 2.7e-12 74.7 61 67.2
Rhsim10G0027100 Rhododendron simsii HOM05D005889 ORTHO05D007495 2.7e-12 74.7 62 67.7
CsaV3_3G042070 Cucumis sativus L. HOM05D005889 ORTHO05D007495 3.5e-12 74.3 62 66.1
Phvul.004G019800 Phaseolus vulgaris HOM05D005889 ORTHO05D007495 3.5e-12 74.3 62 66.1
Potri.001G350500 Populus trichocarpa HOM05D005889 ORTHO05D007495 3.5e-12 74.3 62 69.4
VMungo0464G2061 Vigna mungo HOM05D001690 ORTHO05D002627 3.5e-12 74.3 62 66.1
CSS0042844 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 4.6e-12 73.9 55 74.5
CANSAT64G0610 Cannabis sativa HOM05D005889 ORTHO05D007495 4.6e-12 73.9 58 72.4
CANSAT64G2621 Cannabis sativa HOM05D005889 ORTHO05D007495 4.6e-12 73.9 58 72.4
Solyc02g087150.3 Solanum lycopersicum HOM05D005889 ORTHO05D007495 4.6e-12 73.9 58 70.7
Sopen02g031900 Solanum pennellii HOM05D005889 ORTHO05D007495 4.6e-12 73.9 58 70.7
PGSC0003DMG400000508 Solanum tuberosum HOM05D005889 ORTHO05D007495 4.6e-12 73.9 58 70.7
Manes.15G180360 Manihot esculenta HOM05D005889 ORTHO05D007495 6.0e-12 73.6 61 68.9
Nitab4.5_0001952g0130 Nicotiana tabacum HOM05D005889 ORTHO05D007495 6.0e-12 73.6 58 70.7
Nitab4.5_0005206g0020 Nicotiana tabacum HOM05D005889 ORTHO05D007495 6.0e-12 73.6 58 70.7
Atru.chr8.2424 Acer truncatum HOM05D005889 ORTHO05D007495 7.8e-12 73.2 61 67.2
ECA238G1302 Erigeron canadensis HOM05D005889 ORTHO05D007495 7.8e-12 73.2 57 70.2
Migut.K01361 Erythranthe guttata HOM05D005889 ORTHO05D007495 7.8e-12 73.2 57 71.9
Sc20g0002790 Simmondsia chinensis HOM05D005889 ORTHO05D007495 7.8e-12 73.2 62 67.7
ATR0787G083 Amborella trichopoda HOM05D005889 ORTHO05D007495 1.0e-11 72.8 61 70.5
EL10Ac2g03378 Beta vulgaris HOM05D005889 ORTHO05D007495 1.0e-11 72.8 60 65.0
Cfa007463 Carpinus fangiana HOM05D001690 ORTHO05D002627 1.0e-11 72.8 57 73.7
Peaxi162Scf00129g00825 Petunia axillaris HOM05D005889 ORTHO05D007495 1.0e-11 72.8 56 73.2
Sed0001958 Sechium edule HOM05D005889 ORTHO05D007495 1.0e-11 72.8 62 69.4
AUR62032095 Chenopodium quinoa HOM05D005889 ORTHO05D007495 1.3e-11 72.4 56 67.9
vmacro05795 Vaccinium macrocarpon HOM05D005889 ORTHO05D007495 1.3e-11 72.4 86 53.5
MSTRG.15501 Avicennia marina HOM05D005889 ORTHO05D007495 1.7e-11 72.0 57 70.2
CSS0028338 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 1.7e-11 72.0 59 71.2
CSS0046645 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 1.7e-11 72.0 59 69.5
CAN.G206.53 Capsicum annuum HOM05D005889 ORTHO05D007495 1.7e-11 72.0 58 70.7
Cc07_g02540 Coffea canephora HOM05D005889 ORTHO05D007495 1.7e-11 72.0 58 69.0
Oeu047335.1 Olea europaea HOM05D005889 ORTHO05D007495 1.7e-11 72.0 58 70.7
TWI56G0856 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 2.3e-11 71.6 58 69.0
TAR371G1159 Trochodendron aralioides HOM05D005889 ORTHO05D007495 2.3e-11 71.6 58 69.0
Lj7C409T13 Lonicera japonica HOM05D005889 ORTHO05D007495 3.0e-11 71.2 59 71.2
SalBow1G5017 Salvia bowleyana HOM05D005889 ORTHO05D007495 3.0e-11 71.2 58 67.2
MBI14_g42400_MAGBIO Magnolia biondii HOM05D005889 ORTHO05D007495 3.9e-11 70.9 58 67.2
Ah.16g106950 Amaranthus hybridus HOM05D005889 ORTHO05D007495 5.1e-11 70.5 57 64.9
Lsat_1_v5_gn_2_92760 Lactuca sativa HOM05D005889 ORTHO05D007495 5.1e-11 70.5 56 71.4
Nn4g22882 Nelumbo nucifera HOM05D005889 ORTHO05D007495 5.1e-11 70.5 57 68.4
arahy.Tifrunner.gnm1.ann1.LQS8H1 Arachis hypogaea HOM05D005889 ORTHO05D007495 6.6e-11 70.1 55 70.9
arahy.Tifrunner.gnm1.ann1.XH0R3V Arachis hypogaea HOM05D005889 ORTHO05D007495 6.6e-11 70.1 55 70.9
unitig_21.g20501 Utricularia gibba HOM05D005889 ORTHO05D007495 6.6e-11 70.1 57 68.4
Ca_04220_v3 Cicer arietinum L. HOM05D005889 ORTHO05D007495 8.6e-11 69.7 57 64.9
Glyma.19G012900 Glycine max HOM05D005889 ORTHO05D007495 8.6e-11 69.7 62 61.3
HanXRQChr12g0385561 Helianthus annuus HOM05D005889 ORTHO05D007495 1.1e-10 69.3 56 69.6
MBI14_g19739_MAGBIO Magnolia biondii HOM05D005889 ORTHO05D007495 1.1e-10 69.3 58 65.5
Medtr6g007887 Medicago truncatula HOM05D005889 ORTHO05D007495 1.1e-10 69.3 61 62.3
Aqoxy3G03079 Aquilegia oxysepala HOM05D005889 ORTHO05D007495 1.5e-10 68.9 57 68.4
SGA_v2.0_scaffold205G41723 Striga asiatica HOM05D005889 ORTHO05D007495 1.9e-10 68.6 58 65.5
TWI56G0985 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 1.9e-10 68.6 56 67.9
Peaxi162Scf00700g00623 Petunia axillaris HOM05D005889 ORTHO05D007495 2.5e-10 68.2 56 66.1
Lalb_Chr21g0319321 Lupinus albus HOM05D000340 ORTHO05D000821 3.3e-10 67.8 57 63.2
Hund20036 Selenicereus undatus HOM05D005889 ORTHO05D007495 4.3e-10 67.4 58 65.5
Psat1g080040 Pisum sativum HOM05D005889 ORTHO05D007495 7.3e-10 66.6 60 56.7
Lj2g0018244 Lotus japonicus HOM05D005889 ORTHO05D007495 9.5e-10 66.2 57 63.2
HanXRQChr14g0448791 Helianthus annuus HOM05D005889 ORTHO05D007495 1.6e-09 65.5 56 66.1
PSO832G3377 Papaver somniferum HOM05D005889 ORTHO05D007495 1.6e-09 65.5 59 62.7
PSO063G7534 Papaver somniferum HOM05D005889 ORTHO05D007495 2.1e-09 65.1 59 62.7
Os05g0337400 Oryza sativa ssp. japonica HOM05D005889 ORTHO05D007495 2.8e-09 64.7 57 63.2
Zm00001eb286710 Zea mays HOM05D005889 ORTHO05D007495 2.8e-09 64.7 57 63.2
CDE01G0491 Ceratophyllum demersum HOM05D005889 ORTHO05D007495 4.7e-09 63.9 57 64.9
CDE02G1560 Ceratophyllum demersum HOM05D005889 ORTHO05D007495 4.7e-09 63.9 57 64.9
TWI12G0403 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 1.8e-08 62.0 58 56.9
Aa31LG11G14590 Aethionema arabicum HOM05D005889 ORTHO05D007495 6.8e-08 60.1 36 83.3
TPR.G132 Trifolium pratense HOM05D005889 ORTHO05D007495 1.3e-06 55.8 37 73.0
Pp3c10_16560 Physcomitrium patens HOM05D005889 ORTHO05D007495 6.4e-06 53.5 57 50.9
Mapoly0034s0091 Marchantia polymorpha HOM05D005889 ORTHO05D007495 8.4e-06 53.1 57 52.6


User provided reference genes

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