Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0170261 Rosa chinensis HOM05D000502 ORTHO05D000356 1.6e-58 229.2 116 100.0
RcHm_v2.0_Chr2g0134151 Rosa chinensis HOM05D000502 ORTHO05D000356 6.5e-31 137.5 116 65.5
FAN05G4603 Fragaria x ananassa HOM05D000502 ORTHO05D000356 2.8e-18 95.5 96 59.4
FvH4_6g50010 Fragaria vesca HOM05D000502 ORTHO05D000356 4.8e-18 94.7 96 59.4
FAN09G1472 Fragaria x ananassa HOM05D000502 ORTHO05D000356 4.8e-18 94.7 96 59.4
RcHm_v2.0_Chr7g0222561 Rosa chinensis HOM05D000502 ORTHO05D000356 8.3e-18 94.0 96 59.4
FAN27G2001 Fragaria x ananassa HOM05D000502 ORTHO05D000356 1.2e-16 90.1 96 57.3
RcHm_v2.0_Chr2g0170251 Rosa chinensis HOM05D000502 ORTHO05D000356 2.7e-16 89.0 96 57.3
FvH4_6g49970 Fragaria vesca HOM05D000502 ORTHO05D000356 5.9e-16 87.8 81 58.0
FAN09G3679 Fragaria x ananassa HOM05D020792 ORTHO05D000356 5.9e-16 87.8 81 58.0
FAN14G1890 Fragaria x ananassa HOM05D000502 ORTHO05D000356 5.9e-16 87.8 81 58.0
Prupe.3G278000 Prunus persica HOM05D000502 ORTHO05D000356 1.3e-15 86.7 93 52.7
FvH4_6g50000 Fragaria vesca HOM05D000502 ORTHO05D000356 6.5e-15 84.3 97 54.6
RcHm_v2.0_Chr2g0170161 Rosa chinensis HOM05D000502 ORTHO05D000356 4.2e-14 81.6 94 48.9
FvH4_1g19280 Fragaria vesca HOM05D000502 ORTHO05D000356 5.5e-14 81.3 96 53.1
FAN19G0152 Fragaria x ananassa HOM05D000502 ORTHO05D000356 6.1e-13 77.8 96 52.1
MD09G1040400 Malus domestica HOM05D000502 ORTHO05D000356 2.3e-12 75.9 94 48.9
FAN05G5015 Fragaria x ananassa HOM05D000502 ORTHO05D000356 1.5e-11 73.2 94 47.9
Prupe.3G277900 Prunus persica HOM05D000502 ORTHO05D000356 1.5e-11 73.2 109 45.9
RcHm_v2.0_Chr2g0170241 Rosa chinensis HOM05D000502 ORTHO05D000356 3.4e-11 72.0 96 49.0
RcHm_v2.0_Chr2g0170221 Rosa chinensis HOM05D000502 ORTHO05D000356 5.7e-11 71.2 97 49.5
FvH4_6g49990 Fragaria vesca HOM05D000502 ORTHO05D000356 9.8e-11 70.5 98 48.0
MD09G1040300 Malus domestica HOM05D000502 ORTHO05D000356 2.8e-10 68.9 107 43.0
Sed0026629 Sechium edule HOM05D000502 ORTHO05D000356 2.8e-10 68.9 91 47.3
QL06p018786 Quercus lobata HOM05D000502 ORTHO05D000356 4.8e-10 68.2 108 40.7
QL06p018871 Quercus lobata HOM05D000502 ORTHO05D000356 4.8e-10 68.2 108 40.7
Cfa001999 Carpinus fangiana HOM05D000502 ORTHO05D000356 6.3e-10 67.8 104 41.3
Cfa014729 Carpinus fangiana HOM05D000502 ORTHO05D000356 6.3e-10 67.8 104 41.3
Cfa002002 Carpinus fangiana HOM05D000502 ORTHO05D000356 1.4e-09 66.6 101 40.6
QL06p018857 Quercus lobata HOM05D000502 ORTHO05D000356 1.8e-09 66.2 91 42.9
QL06p018898 Quercus lobata HOM05D000502 ORTHO05D000356 1.8e-09 66.2 91 42.9
QL06p019147 Quercus lobata HOM05D000502 ORTHO05D000356 1.8e-09 66.2 91 42.9
Haze_11415 Corylus avellana HOM05D000502 ORTHO05D000356 4.1e-09 65.1 90 44.4
QL06p019074 Quercus lobata HOM05D000502 ORTHO05D000356 4.1e-09 65.1 110 37.3
RcHm_v2.0_Chr7g0222571 Rosa chinensis HOM05D000502 ORTHO05D000356 4.1e-09 65.1 94 43.6
QL06p019179 Quercus lobata HOM05D000502 ORTHO05D000356 5.4e-09 64.7 88 42.0
RcHm_v2.0_Chr4g0400091 Rosa chinensis HOM05D000502 ORTHO05D000356 7.0e-09 64.3 101 43.6
RcHm_v2.0_Chr2g0170151 Rosa chinensis HOM05D000502 ORTHO05D000356 9.1e-09 63.9 94 42.6
Haze_11411 Corylus avellana HOM05D000502 ORTHO05D000356 1.2e-08 63.5 83 38.6
Dinv35014 Davidia involucrata HOM05D000502 ORTHO05D000356 1.2e-08 63.5 97 43.3
FAN17G1978 Fragaria x ananassa HOM05D000502 ORTHO05D000356 1.2e-08 63.5 99 41.4
Prupe.3G277500 Prunus persica HOM05D000502 ORTHO05D000356 1.2e-08 63.5 96 46.9
TWI56G0419 Tripterygium wilfordii HOM05D000502 ORTHO05D000356 1.2e-08 63.5 86 41.9
TWI56G0671 Tripterygium wilfordii HOM05D000502 ORTHO05D000356 1.2e-08 63.5 97 40.2
Cfa002001 Carpinus fangiana HOM05D000502 ORTHO05D000356 1.6e-08 63.2 99 38.4
Duzib187G0524 Durio zibethinus HOM05D000502 ORTHO05D000356 1.6e-08 63.2 91 42.9
FAN12G3928 Fragaria x ananassa HOM05D000502 ORTHO05D000356 1.6e-08 63.2 99 41.4
Cfa014738 Carpinus fangiana HOM05D000502 ORTHO05D000356 2.0e-08 62.8 101 39.6
CsaV3_5G037570 Cucumis sativus L. HOM05D000502 ORTHO05D000356 2.0e-08 62.8 91 42.9
Dinv35013 Davidia involucrata HOM05D000502 ORTHO05D000356 2.0e-08 62.8 97 41.2
Hma1.2p1_0375F.1_g138990 Hydrangea macrophylla HOM05D000502 ORTHO05D000356 2.0e-08 62.8 82 45.1
Lju41C29T7 Lonicera japonica HOM05D000502 ORTHO05D000356 2.0e-08 62.8 104 41.3
Cfa014734 Carpinus fangiana HOM05D000502 ORTHO05D000356 2.7e-08 62.4 111 37.8
Cfa014740 Carpinus fangiana HOM05D000502 ORTHO05D000356 2.7e-08 62.4 104 38.5
Cfa019534 Carpinus fangiana HOM05D000502 ORTHO05D000356 2.7e-08 62.4 101 39.6
FAN22G2036 Fragaria x ananassa HOM05D000502 ORTHO05D000356 2.7e-08 62.4 84 44.0
Aqoxy3G00889 Aquilegia oxysepala HOM05D000502 ORTHO05D000356 3.5e-08 62.0 89 38.2
Aqoxy3G00894 Aquilegia oxysepala HOM05D000502 ORTHO05D000356 3.5e-08 62.0 89 38.2
Cfa014739 Carpinus fangiana HOM05D000502 ORTHO05D000356 3.5e-08 62.0 88 43.2
MELO3C021495.2 Cucumis melo HOM05D000502 ORTHO05D000356 3.5e-08 62.0 91 41.8
Dinv35015 Davidia involucrata HOM05D000502 ORTHO05D000356 3.5e-08 62.0 97 42.3
FvH4_4g07510 Fragaria vesca HOM05D000502 ORTHO05D000356 3.5e-08 62.0 99 41.4
QL06p018945 Quercus lobata HOM05D000502 ORTHO05D000356 3.5e-08 62.0 87 41.4
QL93p0146_0001 Quercus lobata HOM05D000502 ORTHO05D000356 3.5e-08 62.0 87 41.4
QL93p0146_0014 Quercus lobata HOM05D000502 ORTHO05D000356 3.5e-08 62.0 87 41.4
TWI56G0465 Tripterygium wilfordii HOM05D000502 ORTHO05D000356 3.5e-08 62.0 83 39.8
TWI56G0616 Tripterygium wilfordii HOM05D000502 ORTHO05D000356 3.5e-08 62.0 87 40.2
TWI56G1240 Tripterygium wilfordii HOM05D000502 ORTHO05D000356 3.5e-08 62.0 87 40.2
TWI56G1311 Tripterygium wilfordii HOM05D000502 ORTHO05D000356 3.5e-08 62.0 87 40.2
Hma1.2p1_0375F.1_g138980 Hydrangea macrophylla HOM05D000502 ORTHO05D000356 4.5e-08 61.6 82 43.9
Lju41A30G56 Lonicera japonica HOM05D000502 ORTHO05D000356 4.5e-08 61.6 104 40.4
Lju41C29T9 Lonicera japonica HOM05D000502 ORTHO05D000356 4.5e-08 61.6 104 40.4
TWI56G1398 Tripterygium wilfordii HOM05D000502 ORTHO05D000356 4.5e-08 61.6 87 40.2
Atru.chr8.2600 Acer truncatum HOM05D000502 ORTHO05D000356 5.9e-08 61.2 98 41.8
Dinv35016 Davidia involucrata HOM05D000502 ORTHO05D000356 5.9e-08 61.2 92 41.3
Duzib147G0356 Durio zibethinus HOM05D000502 ORTHO05D000356 5.9e-08 61.2 95 42.1
Lju41C30T9 Lonicera japonica HOM05D000502 ORTHO05D000356 7.7e-08 60.8 98 40.8
QL06p018761 Quercus lobata HOM05D000502 ORTHO05D000356 7.7e-08 60.8 110 37.3
Thecc.09G225600 Theobroma cacao HOM05D000502 ORTHO05D000356 7.7e-08 60.8 96 42.7
TWI56G0452 Tripterygium wilfordii HOM05D000502 ORTHO05D000356 7.7e-08 60.8 87 39.1
TWI56G1219 Tripterygium wilfordii HOM05D000502 ORTHO05D000356 7.7e-08 60.8 85 40.0
Prupe.3G277400 Prunus persica HOM05D000502 ORTHO05D000356 1.0e-07 60.5 59 52.5
Rhsim08G0060400 Rhododendron simsii HOM05D000502 ORTHO05D000356 1.0e-07 60.5 83 41.0
TWI56G0741 Tripterygium wilfordii HOM05D000502 ORTHO05D000356 1.3e-07 60.1 97 42.3
TWI56G0893 Tripterygium wilfordii HOM05D000502 ORTHO05D000356 2.9e-07 58.9 72 45.8
CiPaw.02G109600 Carya illinoinensis HOM05D000502 ORTHO05D000356 3.8e-07 58.5 96 36.5
TWI56G1216 Tripterygium wilfordii HOM05D000502 ORTHO05D000356 5.0e-07 58.2 91 42.9
Lju41A29G30 Lonicera japonica HOM05D000502 ORTHO05D000356 6.6e-07 57.8 80 41.2
Haze_11413 Corylus avellana HOM05D000502 ORTHO05D000356 8.6e-07 57.4 83 38.6
Prupe.3G277300 Prunus persica HOM05D000502 ORTHO05D000356 8.6e-07 57.4 61 52.5
Cfa014728 Carpinus fangiana HOM05D000502 ORTHO05D000356 1.1e-06 57.0 104 37.5
Rhsim05G0046000 Rhododendron simsii HOM05D000502 ORTHO05D000356 1.1e-06 57.0 96 38.5
RhsimUnG0140500 Rhododendron simsii HOM05D000502 ORTHO05D000356 1.1e-06 57.0 96 38.5
Thecc.10G112400 Theobroma cacao HOM05D000502 ORTHO05D000356 1.1e-06 57.0 83 39.8
Actinidia37384 Actinidia chinensis HOM05D000502 ORTHO05D000356 1.5e-06 56.6 111 33.3
Aqoxy3G00887 Aquilegia oxysepala HOM05D000502 ORTHO05D000356 1.5e-06 56.6 102 33.3
Cfa014736 Carpinus fangiana HOM05D000502 ORTHO05D000356 1.5e-06 56.6 101 37.6
Prupe.2G204200 Prunus persica HOM05D000502 ORTHO05D000356 1.5e-06 56.6 108 35.2
Prupe.2G204300 Prunus persica HOM05D000502 ORTHO05D000356 1.5e-06 56.6 108 35.2
Prupe.2G204500 Prunus persica HOM05D000502 ORTHO05D000356 1.5e-06 56.6 108 35.2
Cfa019536 Carpinus fangiana HOM05D000502 ORTHO05D000356 1.9e-06 56.2 69 42.0
COL.COLO4_34361 Corchorus olitorius HOM05D000502 ORTHO05D000356 2.5e-06 55.8 86 39.5
MD04G1045600 Malus domestica HOM05D000502 ORTHO05D000356 2.5e-06 55.8 98 37.8
Manes.15G176072 Manihot esculenta HOM05D000502 ORTHO05D000356 2.5e-06 55.8 96 38.5
CiPaw.02G110200 Carya illinoinensis HOM05D000502 ORTHO05D000356 3.3e-06 55.5 97 38.1
MD01G1098700 Malus domestica HOM05D000502 ORTHO05D000356 3.3e-06 55.5 109 33.0
Rhsim08G0062200 Rhododendron simsii HOM05D000502 ORTHO05D000356 3.3e-06 55.5 93 35.5
Haze_11414 Corylus avellana HOM05D000502 ORTHO05D000356 4.2e-06 55.1 83 38.6
Thecc.10G112200 Theobroma cacao HOM05D000502 ORTHO05D000356 4.2e-06 55.1 83 38.6
Thecc.10G112500 Theobroma cacao HOM05D000502 ORTHO05D000356 4.2e-06 55.1 83 38.6
Actinidia37385 Actinidia chinensis HOM05D000502 ORTHO05D000356 7.2e-06 54.3 93 36.6
Oeu050235.1 Olea europaea HOM05D000502 ORTHO05D000356 7.2e-06 54.3 119 35.3


User provided reference genes

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