Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0169751 Rosa chinensis HOM05D007804 ORTHO05D009828 7.4e-81 303.9 163 100.0
FAN05G0497 Fragaria x ananassa HOM05D007804 ORTHO05D009828 6.9e-71 270.8 163 90.8
FAN02G3435 Fragaria x ananassa HOM05D007804 ORTHO05D009828 5.9e-70 267.7 163 89.0
FvH4_6g49720 Fragaria vesca HOM05D007804 ORTHO05D009828 7.7e-70 267.3 163 89.0
FAN14G3729 Fragaria x ananassa HOM05D007804 ORTHO05D009828 7.7e-70 267.3 163 89.0
FAN09G3343 Fragaria x ananassa HOM05D007804 ORTHO05D009828 2.1e-67 259.2 163 86.5
Prupe.3G275600 Prunus persica HOM05D007804 ORTHO05D009828 2.3e-29 132.9 166 53.6
CiPaw.03G032600 Carya illinoinensis HOM05D007804 ORTHO05D009828 1.0e-18 97.4 174 45.4
QL02p079311 Quercus lobata HOM05D007804 ORTHO05D009828 1.4e-18 97.1 175 41.1
Thecc.04G069800 Theobroma cacao HOM05D007804 ORTHO05D009828 4.0e-18 95.5 124 50.8
Manes.17G117500 Manihot esculenta HOM05D007804 ORTHO05D009828 7.5e-17 91.3 128 47.7
Cfa007487 Carpinus fangiana HOM05D007804 ORTHO05D009828 9.8e-17 90.9 179 41.3
COL.COLO4_36996 Corchorus olitorius HOM05D007804 ORTHO05D009828 8.3e-16 87.8 165 43.0
Manes.15G177500 Manihot esculenta HOM05D007804 ORTHO05D009828 8.3e-16 87.8 159 42.1
Manes.17G120501 Manihot esculenta HOM05D007804 ORTHO05D009828 1.9e-15 86.7 149 42.3
Cpa.g.sc14.66 Carica papaya HOM05D007804 ORTHO05D009828 2.7e-14 82.8 155 42.6
Duzib147G0590 Durio zibethinus HOM05D007804 ORTHO05D009828 6.0e-14 81.6 155 40.6
Lj2g0027470 Lotus japonicus HOM05D007804 ORTHO05D009828 1.3e-13 80.5 150 38.7
Ciclev10012771m.g Citrus clementina HOM05D007804 ORTHO05D009828 3.9e-13 79.0 182 38.5
Gohir.D09G022600 Gossypium hirsutum HOM05D007804 ORTHO05D009828 5.0e-13 78.6 157 42.7
Nn3g17058 Nelumbo nucifera HOM05D007804 ORTHO05D009828 5.0e-13 78.6 177 36.7
Phvul.004G023300 Phaseolus vulgaris HOM05D007804 ORTHO05D009828 6.6e-13 78.2 178 37.6
Glyma.13G067400 Glycine max HOM05D007804 ORTHO05D009828 1.5e-12 77.0 174 34.5
Gorai.006G026600 Gossypium raimondii HOM05D007804 ORTHO05D009828 1.5e-12 77.0 164 41.5
VMungo0464G0276 Vigna mungo HOM05D007804 ORTHO05D009828 1.5e-12 77.0 166 37.3
Lalb_Chr21g0319161 Lupinus albus HOM05D007804 ORTHO05D009828 2.5e-12 76.3 163 36.2
Gohir.A09G023300 Gossypium hirsutum HOM05D007804 ORTHO05D009828 3.3e-12 75.9 159 42.1
Glyma.19G017000 Glycine max HOM05D007804 ORTHO05D009828 2.8e-11 72.8 176 35.8
Sopen02g032190 Solanum pennellii HOM05D007804 ORTHO05D009828 2.8e-11 72.8 162 36.4
Solyc02g087440.4 Solanum lycopersicum HOM05D007804 ORTHO05D009828 1.4e-10 70.5 170 34.7
MELO3C021487.2 Cucumis melo HOM05D007804 ORTHO05D009828 4.0e-10 68.9 134 35.8
Migut.K01348 Erythranthe guttata HOM05D007804 ORTHO05D009828 4.0e-10 68.9 157 38.9
Oeu027756.1 Olea europaea HOM05D007804 ORTHO05D009828 4.0e-10 68.9 131 41.2
BcaC03g17515 Brassica carinata HOM05D007804 ORTHO05D009828 6.8e-10 68.2 187 36.9
C02p54770 Brassica napus HOM05D007804 ORTHO05D009828 6.8e-10 68.2 187 36.9
BolC2t11538H Brassica oleracea HOM05D007804 ORTHO05D009828 6.8e-10 68.2 187 36.9
Peaxi162Scf00129g00628 Petunia axillaris HOM05D007804 ORTHO05D009828 8.9e-10 67.8 167 37.7
BcaC06g30917 Brassica carinata HOM05D007804 ORTHO05D009828 1.2e-09 67.4 162 37.0
Psat1g077320 Pisum sativum HOM05D007804 ORTHO05D009828 1.2e-09 67.4 144 38.2
Lalb_Chr02g0159931 Lupinus albus HOM05D007804 ORTHO05D009828 1.5e-09 67.0 135 40.7
Nitab4.5_0002265g0080 Nicotiana tabacum HOM05D007804 ORTHO05D009828 2.0e-09 66.6 164 35.4
ClCG09G018550 Citrullus lanatus HOM05D007804 ORTHO05D009828 2.6e-09 66.2 140 37.9
BraA02t08592Z Brassica rapa HOM05D007804 ORTHO05D009828 4.4e-09 65.5 159 35.8
CSS0004616 Camellia sinensis var. sinensis HOM05D007804 ORTHO05D009828 5.8e-09 65.1 136 39.7
Rhsim08G0063700 Rhododendron simsii HOM05D007804 ORTHO05D009828 5.8e-09 65.1 159 38.4
Actinidia02723 Actinidia chinensis HOM05D007804 ORTHO05D009828 7.5e-09 64.7 139 39.6
DCAR_011178 Daucus carota HOM05D007804 ORTHO05D009828 7.5e-09 64.7 154 38.3
BcaB07g30130 Brassica carinata HOM05D007804 ORTHO05D009828 9.8e-09 64.3 184 37.0
A02p35930 Brassica napus HOM05D007804 ORTHO05D009828 9.8e-09 64.3 159 35.8
Nitab4.5_0001239g0070 Nicotiana tabacum HOM05D007804 ORTHO05D009828 9.8e-09 64.3 166 34.9
Aa31LG2G4650 Aethionema arabicum HOM05D007804 ORTHO05D009828 1.7e-08 63.5 188 32.4
MSTRG.23968 Avicennia marina HOM05D007804 ORTHO05D009828 1.7e-08 63.5 138 41.3
Medtr6g009320 Medicago truncatula HOM05D007804 ORTHO05D009828 1.7e-08 63.5 135 37.8
A06p40550 Brassica napus HOM05D007804 ORTHO05D009828 2.2e-08 63.2 186 38.7
CARHR292560 Cardamine hirsuta HOM05D007804 ORTHO05D009828 2.2e-08 63.2 164 35.4
BcaC06g33740 Brassica carinata HOM05D007804 ORTHO05D009828 2.9e-08 62.8 162 39.5
PGSC0003DMG402001401 Solanum tuberosum HOM05D007804 ORTHO05D009828 2.9e-08 62.8 159 34.6
THA.LOC104805425 Tarenaya hassleriana HOM05D007804 ORTHO05D009828 2.9e-08 62.8 203 32.5
BraA06t26974Z Brassica rapa HOM05D007804 ORTHO05D009828 3.7e-08 62.4 186 37.6
Thhalv10004896m.g Eutrema salsugineum HOM05D007804 ORTHO05D009828 3.7e-08 62.4 181 35.9
SGA_v2.0_scaffold135G34801 Striga asiatica HOM05D007804 ORTHO05D009828 3.7e-08 62.4 153 37.9
Sp2g17190 Schrenkiella parvula HOM05D007804 ORTHO05D009828 4.9e-08 62.0 165 37.0
Sed0004613 Sechium edule HOM05D007804 ORTHO05D009828 4.9e-08 62.0 135 37.8
Sed0005835 Sechium edule HOM05D007804 ORTHO05D009828 4.9e-08 62.0 135 37.8
C07p37470 Brassica napus HOM05D000068 ORTHO05D009828 1.1e-07 60.8 183 37.7
BolC7t44259H Brassica oleracea HOM05D000068 ORTHO05D009828 1.1e-07 60.8 183 37.7
Migut.H00872 Erythranthe guttata HOM05D007804 ORTHO05D009828 1.9e-07 60.1 161 36.0
AT3G28420 Arabidopsis thaliana HOM05D007804 ORTHO05D009828 3.2e-07 59.3 192 33.3
Sed0002452 Sechium edule HOM05D007804 ORTHO05D009828 5.4e-07 58.5 147 36.7
CsaV3_5G037680 Cucumis sativus L. HOM05D007804 ORTHO05D009828 7.1e-07 58.2 171 31.0
AL5G18030 Arabidopsis lyrata HOM05D007804 ORTHO05D009828 9.2e-07 57.8 165 37.6
TWI36G0430 Tripterygium wilfordii HOM05D007804 ORTHO05D009828 9.2e-07 57.8 128 39.8
TAR622G0153 Trochodendron aralioides HOM05D007804 ORTHO05D009828 1.6e-06 57.0 164 29.3
unitig_899.g15501 Utricularia gibba HOM05D007804 ORTHO05D009828 1.6e-06 57.0 127 39.4
CAN.G206.83 Capsicum annuum HOM05D007804 ORTHO05D009828 2.7e-06 56.2 175 33.1
Carub.0005s0691 Capsella rubella HOM05D007804 ORTHO05D009828 4.6e-06 55.5 161 37.3
Nn4g22964 Nelumbo nucifera HOM05D007804 ORTHO05D009828 4.6e-06 55.5 163 35.0
TPR.G32605 Trifolium pratense HOM05D007804 ORTHO05D009828 6.0e-06 55.1 164 32.3


User provided reference genes

Program Settings