Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0169701 Rosa chinensis HOM05D004965 ORTHO05D004401 5.4e-50 200.7 100 100.0
FvH4_6g49680 Fragaria vesca HOM05D004965 ORTHO05D004401 2.6e-44 181.8 100 90.0
FAN14G2761 Fragaria x ananassa HOM05D004965 ORTHO05D004401 1.7e-43 179.1 100 88.0
FAN02G2636 Fragaria x ananassa HOM05D004965 ORTHO05D004401 2.9e-43 178.3 100 88.0
FAN09G1906 Fragaria x ananassa HOM05D004965 ORTHO05D004401 2.9e-43 178.3 100 88.0
FAN05G5108 Fragaria x ananassa HOM05D004965 ORTHO05D004401 4.9e-43 177.6 100 88.0
MD09G1042500 Malus domestica HOM05D004965 ORTHO05D004401 9.6e-31 136.7 94 77.7
Prupe.3G275200 Prunus persica HOM05D004965 ORTHO05D004401 1.6e-30 136.0 89 80.9
MD17G1044000 Malus domestica HOM05D004965 ORTHO05D004401 7.1e-26 120.6 83 77.1
Haze_14606 Corylus avellana HOM05D004965 ORTHO05D004401 1.9e-23 112.5 93 65.6
QL02p079418 Quercus lobata HOM05D004965 ORTHO05D004401 2.1e-22 109.0 93 60.2
CiPaw.03G032200 Carya illinoinensis HOM05D004965 ORTHO05D004401 6.9e-21 104.0 95 61.1
Cpa.g.sc14.63 Carica papaya HOM05D004965 ORTHO05D004401 5.8e-20 100.9 98 57.1
Atru.chr8.2466 Acer truncatum HOM05D004965 ORTHO05D004401 3.8e-19 98.2 111 53.2
Dinv33690 Davidia involucrata HOM05D004965 ORTHO05D004401 1.1e-18 96.7 97 56.7
Ciclev10013642m.g Citrus clementina HOM05D004965 ORTHO05D004401 4.2e-18 94.7 87 57.5
Thecc.04G069500 Theobroma cacao HOM05D004965 ORTHO05D004401 7.1e-18 94.0 100 52.0
Cfa007493 Carpinus fangiana HOM05D004965 ORTHO05D004401 6.0e-17 90.9 84 58.3
Potri.017G074600 Populus trichocarpa HOM05D004965 ORTHO05D004401 1.3e-16 89.7 100 52.0
CiPaw.04G021200 Carya illinoinensis HOM05D004965 ORTHO05D004401 3.0e-16 88.6 94 51.1
Manes.15G177900 Manihot esculenta HOM05D004965 ORTHO05D004401 3.9e-16 88.2 100 53.0
Glyma.13G067000 Glycine max HOM05D004965 ORTHO05D004401 5.1e-16 87.8 88 58.0
CANSAT64G1053 Cannabis sativa HOM05D004965 ORTHO05D004401 6.7e-16 87.4 110 49.1
Lj2g0009068 Lotus japonicus HOM05D004965 ORTHO05D004401 6.7e-16 87.4 99 54.5
Phvul.004G023800 Phaseolus vulgaris HOM05D004965 ORTHO05D004401 1.9e-15 85.9 102 52.0
Glyma.19G017400 Glycine max HOM05D004965 ORTHO05D004401 4.3e-15 84.7 88 55.7
Gohir.A07G216700 Gossypium hirsutum HOM05D004965 ORTHO05D004401 1.6e-14 82.8 100 49.0
Gohir.D07G223500 Gossypium hirsutum HOM05D004965 ORTHO05D004401 2.8e-14 82.0 100 49.0
TWI36G1294 Tripterygium wilfordii HOM05D004965 ORTHO05D004401 2.8e-14 82.0 100 49.0
Gorai.001G257800 Gossypium raimondii HOM05D004965 ORTHO05D004401 3.7e-14 81.6 100 49.0
TAR629G2889 Trochodendron aralioides HOM05D004965 ORTHO05D004401 4.8e-14 81.3 89 55.1
Lalb_Chr06g0176581 Lupinus albus HOM05D004965 ORTHO05D004401 5.3e-13 77.8 99 50.5
TAR369G0013 Trochodendron aralioides HOM05D004965 ORTHO05D004401 5.3e-13 77.8 100 48.0
Sed0027722 Sechium edule HOM05D004965 ORTHO05D004401 6.9e-13 77.4 96 45.8
Actinidia06052 Actinidia chinensis HOM05D004965 ORTHO05D004401 1.2e-12 76.6 97 46.4
TWI56G0241 Tripterygium wilfordii HOM05D004965 ORTHO05D004401 1.5e-12 76.3 96 47.9
vmacro05780 Vaccinium macrocarpon HOM05D004965 ORTHO05D004401 2.6e-12 75.5 84 50.0
CsaV3_5G037710 Cucumis sativus L. HOM05D004965 ORTHO05D004401 1.0e-11 73.6 91 49.5
Dinv24933 Davidia involucrata HOM05D004965 ORTHO05D004401 1.0e-11 73.6 89 51.7
ClCG09G018520 Citrullus lanatus HOM05D006434 ORTHO05D008069 1.3e-11 73.2 91 49.5
Psat1g077560 Pisum sativum HOM05D004965 ORTHO05D004401 1.7e-11 72.8 89 52.8
TPR.G32595 Trifolium pratense HOM05D004965 ORTHO05D004401 1.7e-11 72.8 91 49.5
Sabra17G0067000 Salix brachista HOM05D004965 ORTHO05D004401 3.8e-11 71.6 86 50.0
TAR374G1442 Trochodendron aralioides HOM05D004965 ORTHO05D004401 3.8e-11 71.6 90 46.7
CSS0043755 Camellia sinensis var. sinensis HOM05D004965 ORTHO05D004401 4.9e-11 71.2 95 48.4
PGR083G1219 Punica granatum HOM05D004965 ORTHO05D004401 8.4e-11 70.5 93 45.2
arahy.Tifrunner.gnm1.ann1.6A0KRF Arachis hypogaea HOM05D004965 ORTHO05D004401 1.1e-10 70.1 104 45.2
arahy.Tifrunner.gnm1.ann1.E1G8VG Arachis hypogaea HOM05D004965 ORTHO05D004401 1.1e-10 70.1 104 45.2
TAR622G1192 Trochodendron aralioides HOM05D004965 ORTHO05D004401 2.5e-10 68.9 79 51.9
MSTRG.2369 Avicennia marina HOM05D004965 ORTHO05D004401 3.2e-10 68.6 101 41.6
Lalb_Chr21g0319141 Lupinus albus HOM05D004965 ORTHO05D004401 4.2e-10 68.2 99 42.4
COL.COLO4_36990 Corchorus olitorius HOM05D004965 ORTHO05D004401 5.5e-10 67.8 62 54.8
Rhsim10G0029300 Rhododendron simsii HOM05D004965 ORTHO05D004401 7.1e-10 67.4 90 44.4
Lju41A28T116 Lonicera japonica HOM05D004965 ORTHO05D004401 1.6e-09 66.2 95 43.2
Actinidia12285 Actinidia chinensis HOM05D004965 ORTHO05D004401 4.6e-09 64.7 95 43.2
GSVIVG01020127001 Vitis vinifera HOM05D004965 ORTHO05D004401 4.6e-09 64.7 101 42.6
Cc11_g13890 Coffea canephora HOM05D004965 ORTHO05D004401 7.9e-09 63.9 88 45.5
Dinv31145 Davidia involucrata HOM05D004965 ORTHO05D004401 7.9e-09 63.9 97 42.3
Duzib187G0871 Durio zibethinus HOM05D004965 ORTHO05D004401 7.9e-09 63.9 82 47.6
Thecc.02G237300 Theobroma cacao HOM05D004965 ORTHO05D004401 7.9e-09 63.9 95 46.3
CSS0011493 Camellia sinensis var. sinensis HOM05D004965 ORTHO05D004401 1.0e-08 63.5 84 44.0
Lalb_Chr05g0217401 Lupinus albus HOM05D004965 ORTHO05D004401 2.3e-08 62.4 88 44.3
MBI01_g13075_MAGBIO Magnolia biondii HOM05D004965 ORTHO05D004401 3.0e-08 62.0 95 46.3
TWI12G0653 Tripterygium wilfordii HOM05D004965 ORTHO05D004401 3.0e-08 62.0 94 41.5
AUR62030559 Chenopodium quinoa HOM05D068275 ORTHO05D004401 8.7e-08 60.5 111 39.6
Thhalv10005220m.g Eutrema salsugineum HOM05D009946 ORTHO05D004401 8.7e-08 60.5 86 43.0
Manes.01G193600 Manihot esculenta HOM05D004965 ORTHO05D004401 8.7e-08 60.5 94 39.4
vmacro16304 Vaccinium macrocarpon HOM05D004965 ORTHO05D004401 8.7e-08 60.5 94 42.6
Ciclev10033175m.g Citrus clementina HOM05D004965 ORTHO05D004401 1.1e-07 60.1 104 41.3
Nn4g22977 Nelumbo nucifera HOM05D004965 ORTHO05D004401 1.5e-07 59.7 96 41.7
Nn3g17067 Nelumbo nucifera HOM05D004965 ORTHO05D004401 1.9e-07 59.3 88 44.3
PGR119G0489 Punica granatum HOM05D004965 ORTHO05D004401 1.9e-07 59.3 92 43.5
Glyma.02G025700 Glycine max HOM05D004965 ORTHO05D004401 2.5e-07 58.9 91 46.2
Carub.0005s0698 Capsella rubella HOM05D009946 ORTHO05D004401 3.3e-07 58.5 86 43.0
Lalb_Chr09g0326631 Lupinus albus HOM05D004965 ORTHO05D004401 4.3e-07 58.2 65 50.8
Medtr6g009390 Medicago truncatula HOM05D004965 ORTHO05D004401 4.3e-07 58.2 70 48.6
Aqoxy3G03187 Aquilegia oxysepala HOM05D004965 ORTHO05D004401 5.7e-07 57.8 92 41.3
Duzib248G0243 Durio zibethinus HOM05D004965 ORTHO05D004401 5.7e-07 57.8 104 36.5
Glyma.01G038900 Glycine max HOM05D004965 ORTHO05D004401 5.7e-07 57.8 93 45.2
Lalb_Chr16g0382641 Lupinus albus HOM05D004965 ORTHO05D004401 9.6e-07 57.0 91 39.6
Hund13292 Selenicereus undatus HOM05D004965 ORTHO05D004401 1.6e-06 56.2 101 41.6
Cc07_g02840 Coffea canephora HOM05D004965 ORTHO05D004401 2.1e-06 55.8 99 41.4
CiPaw.06G078100 Carya illinoinensis HOM05D004965 ORTHO05D004401 2.8e-06 55.5 95 44.2
Manes.05G094200 Manihot esculenta HOM05D004965 ORTHO05D004401 2.8e-06 55.5 99 42.4
PGSC0003DMG400004191 Solanum tuberosum HOM05D004965 ORTHO05D004401 2.8e-06 55.5 93 37.6
CARHR292510 Cardamine hirsuta HOM05D009946 ORTHO05D004401 3.7e-06 55.1 86 40.7
Sp2g17220 Schrenkiella parvula HOM05D009946 ORTHO05D004401 3.7e-06 55.1 86 41.9
DCAR_006716 Daucus carota HOM05D004965 ORTHO05D004401 4.8e-06 54.7 95 37.9
Eucgr.J02154 Eucalyptus grandis HOM05D004965 ORTHO05D004401 4.8e-06 54.7 89 40.4
Lj2g0004313 Lotus japonicus HOM05D004965 ORTHO05D004401 4.8e-06 54.7 104 38.5
AL5G18080 Arabidopsis lyrata HOM05D009946 ORTHO05D004401 6.2e-06 54.3 86 39.5
DCAR_025362 Daucus carota HOM05D004965 ORTHO05D004401 6.2e-06 54.3 98 38.8
Gorai.002G165000 Gossypium raimondii HOM05D004965 ORTHO05D004401 6.2e-06 54.3 109 33.9
Lsat_1_v5_gn_0_35980 Lactuca sativa HOM05D004965 ORTHO05D004401 6.2e-06 54.3 88 42.0
Duzib268G0529 Durio zibethinus HOM05D004965 ORTHO05D004401 8.2e-06 53.9 104 37.5
Prupe.1G263100 Prunus persica HOM05D004965 ORTHO05D004401 8.2e-06 53.9 101 39.6


User provided reference genes

Program Settings