Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0169691 Rosa chinensis HOM05D006434 ORTHO05D008069 1.2e-180 636.3 322 100.0
FvH4_6g49670 Fragaria vesca HOM05D006434 ORTHO05D008069 1.2e-164 583.2 324 92.0
FAN14G5872 Fragaria x ananassa HOM05D006434 ORTHO05D008069 4.7e-164 581.3 324 92.0
FAN05G1688 Fragaria x ananassa HOM05D006434 ORTHO05D008069 3.1e-163 578.6 324 91.7
FAN02G4063 Fragaria x ananassa HOM05D006434 ORTHO05D008069 1.5e-162 576.2 324 91.0
FAN09G0258 Fragaria x ananassa HOM05D006434 ORTHO05D008069 7.6e-146 520.8 296 90.2
MD09G1042700 Malus domestica HOM05D006434 ORTHO05D008069 1.6e-135 486.5 328 78.4
CANSAT64G2331 Cannabis sativa HOM05D006434 ORTHO05D008069 1.1e-120 437.2 298 75.2
GSVIVG01032566001 Vitis vinifera HOM05D006434 ORTHO05D008069 1.6e-119 433.3 323 70.9
Cfa007492 Carpinus fangiana HOM05D006434 ORTHO05D008069 6.1e-119 431.4 326 70.6
Dinv35002 Davidia involucrata HOM05D006434 ORTHO05D008069 7.9e-119 431.0 325 70.8
TAR629G3263 Trochodendron aralioides HOM05D006434 ORTHO05D008069 3.1e-115 419.1 327 69.4
CsaV3_5G037720 Cucumis sativus L. HOM05D006434 ORTHO05D008069 5.3e-115 418.3 314 69.4
vmacro05779 Vaccinium macrocarpon HOM05D006434 ORTHO05D008069 5.3e-115 418.3 322 69.6
Aqoxy3G00846 Aquilegia oxysepala HOM05D006434 ORTHO05D008069 9.0e-115 417.5 313 69.0
Atru.chr8.2465 Acer truncatum HOM05D006434 ORTHO05D008069 2.6e-114 416.0 327 68.2
Prupe.3G275100 Prunus persica HOM05D006434 ORTHO05D008069 5.9e-114 414.8 270 80.0
MELO3C021484.2 Cucumis melo HOM05D006434 ORTHO05D008069 1.3e-113 413.7 311 69.8
COL.COLO4_36989 Corchorus olitorius HOM05D006434 ORTHO05D008069 1.7e-113 413.3 323 67.2
Rhsim10G0029400 Rhododendron simsii HOM05D006434 ORTHO05D008069 2.9e-113 412.5 326 68.7
Sed0011674 Sechium edule HOM05D006434 ORTHO05D008069 8.5e-113 411.0 319 67.7
Gorai.001G257900 Gossypium raimondii HOM05D006434 ORTHO05D008069 1.1e-112 410.6 328 66.8
Actinidia06053 Actinidia chinensis HOM05D006434 ORTHO05D008069 1.9e-112 409.8 322 67.1
CSS0004781 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 2.5e-112 409.5 327 66.4
Ciclev10012231m.g Citrus clementina HOM05D006434 ORTHO05D008069 3.2e-112 409.1 315 68.6
Gohir.A07G216800 Gossypium hirsutum HOM05D006434 ORTHO05D008069 3.2e-112 409.1 325 66.8
Hma1.2p1_0136F.1_g062090 Hydrangea macrophylla HOM05D006434 ORTHO05D008069 3.2e-112 409.1 255 79.2
CAN.G1128.11 Capsicum annuum HOM05D006434 ORTHO05D008069 5.5e-112 408.3 326 68.7
Gohir.D07G223600 Gossypium hirsutum HOM05D006434 ORTHO05D008069 5.5e-112 408.3 328 66.5
Sopen02g016670 Solanum pennellii HOM05D006434 ORTHO05D008069 5.5e-112 408.3 281 73.7
PGSC0003DMG400006900 Solanum tuberosum HOM05D006434 ORTHO05D008069 1.2e-111 407.1 322 66.8
CSS0040499 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 2.7e-111 406.0 339 64.3
Nitab4.5_0001727g0150 Nicotiana tabacum HOM05D006434 ORTHO05D008069 6.1e-111 404.8 322 66.8
TWI56G0494 Tripterygium wilfordii HOM05D006434 ORTHO05D008069 7.9e-111 404.4 317 65.9
Solyc02g067540.3 Solanum lycopersicum HOM05D006434 ORTHO05D008069 1.0e-110 404.1 323 67.8
Duzib264G0249 Durio zibethinus HOM05D006434 ORTHO05D008069 3.0e-110 402.5 323 65.0
Potri.001G349800 Populus trichocarpa HOM05D006434 ORTHO05D008069 8.8e-110 401.0 321 66.7
Thecc.04G069300 Theobroma cacao HOM05D006434 ORTHO05D008069 1.1e-109 400.6 333 64.3
PGR142G2438 Punica granatum HOM05D006434 ORTHO05D008069 5.7e-109 398.3 314 65.6
Nn1g08819 Nelumbo nucifera HOM05D006434 ORTHO05D008069 7.4e-109 397.9 325 66.2
Manes.15G178000 Manihot esculenta HOM05D006434 ORTHO05D008069 2.4e-107 392.9 321 66.4
PSO161G0076 Papaver somniferum HOM05D006434 ORTHO05D008069 3.1e-107 392.5 319 66.8
Phvul.004G023900 Phaseolus vulgaris HOM05D006434 ORTHO05D008069 3.1e-107 392.5 317 67.5
Sabra16G0229200 Salix brachista HOM05D006434 ORTHO05D008069 5.3e-107 391.7 321 66.7
Eucgr.I01896 Eucalyptus grandis HOM05D006434 ORTHO05D008069 6.9e-107 391.3 273 71.4
Peaxi162Scf00059g00128 Petunia axillaris HOM05D006434 ORTHO05D008069 9.1e-107 391.0 319 66.8
QL02p079411 Quercus lobata HOM05D006434 ORTHO05D008069 9.1e-107 391.0 317 66.6
Cc07_g02850 Coffea canephora HOM05D006434 ORTHO05D008069 5.9e-106 388.3 326 64.7
Oeu022866.3 Olea europaea HOM05D006434 ORTHO05D008069 1.4e-104 383.6 355 59.2
PSO478G2838 Papaver somniferum HOM05D006434 ORTHO05D008069 1.4e-104 383.6 319 64.6
Lj2g0012157 Lotus japonicus HOM05D006434 ORTHO05D008069 4.7e-103 378.6 318 66.0
Glyma.13G066900 Glycine max HOM05D006434 ORTHO05D008069 1.4e-102 377.1 318 64.2
AUR62018326 Chenopodium quinoa HOM05D006434 ORTHO05D008069 2.3e-102 376.3 314 62.4
Lalb_Chr21g0319131 Lupinus albus HOM05D006434 ORTHO05D008069 5.1e-102 375.2 325 64.9
VMungo0464G0451 Vigna mungo HOM05D006434 ORTHO05D008069 5.1e-102 375.2 319 65.5
Migut.H00876 Erythranthe guttata HOM05D006434 ORTHO05D008069 1.5e-101 373.6 308 65.3
arahy.Tifrunner.gnm1.ann1.X2C98S Arachis hypogaea HOM05D006434 ORTHO05D008069 3.3e-101 372.5 326 64.4
ATR0665G567 Amborella trichopoda HOM05D006434 ORTHO05D008069 7.4e-101 371.3 279 67.4
CiPaw.03G032300 Carya illinoinensis HOM05D006434 ORTHO05D008069 7.4e-101 371.3 290 67.6
arahy.Tifrunner.gnm1.ann1.ICRE53 Arachis hypogaea HOM05D006434 ORTHO05D008069 9.7e-101 370.9 317 65.0
Carub.0005s0699 Capsella rubella HOM05D006434 ORTHO05D008069 3.7e-100 369.0 318 63.2
Medtr6g009400 Medicago truncatula HOM05D006434 ORTHO05D008069 6.3e-100 368.2 319 64.6
Sc10g0004040 Simmondsia chinensis HOM05D006434 ORTHO05D008069 8.2e-100 367.9 254 71.7
SGA_v2.0_scaffold205G41750 Striga asiatica HOM05D006434 ORTHO05D008069 4.1e-99 365.5 286 65.0
ClCG09G018520 Citrullus lanatus HOM05D006434 ORTHO05D008069 2.6e-98 362.8 289 67.5
THA.LOC104823923 Tarenaya hassleriana HOM05D006434 ORTHO05D008069 2.6e-98 362.8 315 61.6
AL5G18090 Arabidopsis lyrata HOM05D006434 ORTHO05D008069 4.5e-98 362.1 311 61.7
Sp2g17230 Schrenkiella parvula HOM05D006434 ORTHO05D008069 5.9e-98 361.7 312 63.8
DCAR_006717 Daucus carota HOM05D006434 ORTHO05D008069 7.7e-98 361.3 238 73.5
CARHR292500 Cardamine hirsuta HOM05D006434 ORTHO05D008069 1.7e-97 360.1 310 63.2
ECA232G4812 Erigeron canadensis HOM05D006434 ORTHO05D008069 1.7e-97 360.1 313 62.0
TPR.G32608 Trifolium pratense HOM05D006434 ORTHO05D008069 1.7e-97 360.1 320 63.1
MSTRG.23964 Avicennia marina HOM05D006434 ORTHO05D008069 2.9e-97 359.4 313 62.9
Thhalv10004634m.g Eutrema salsugineum HOM05D006434 ORTHO05D008069 5.0e-97 358.6 310 63.5
HanXRQChr15g0488521 Helianthus annuus HOM05D006434 ORTHO05D008069 1.1e-96 357.5 252 71.0
BcaC06g33735 Brassica carinata HOM05D006434 ORTHO05D008069 2.5e-96 356.3 315 61.9
A06p40510 Brassica napus HOM05D006434 ORTHO05D008069 5.5e-96 355.1 318 61.6
BraA06t26970Z Brassica rapa HOM05D006434 ORTHO05D008069 5.5e-96 355.1 318 61.6
Aa31LG2G4610 Aethionema arabicum HOM05D006434 ORTHO05D008069 1.6e-95 353.6 305 63.6
AUR62030560 Chenopodium quinoa HOM05D006434 ORTHO05D008069 6.1e-95 351.7 325 58.5
unitig_744.g24344 Utricularia gibba HOM05D006434 ORTHO05D008069 1.0e-94 350.9 256 71.9
Lsat_1_v5_gn_4_180280 Lactuca sativa HOM05D006434 ORTHO05D008069 1.4e-94 350.5 326 59.5
Psat1g076480 Pisum sativum HOM05D006434 ORTHO05D008069 1.8e-94 350.1 278 66.5
EL10Ac2g02902 Beta vulgaris HOM05D006434 ORTHO05D008069 3.0e-94 349.4 341 57.5
CDE02G1577 Ceratophyllum demersum HOM05D006434 ORTHO05D008069 6.7e-94 348.2 281 62.6
BolC7t44265H Brassica oleracea HOM05D006434 ORTHO05D008069 1.1e-93 347.4 314 61.1
C07p37520 Brassica napus HOM05D006434 ORTHO05D008069 2.6e-93 346.3 313 61.0
Haze_14607 Corylus avellana HOM05D006434 ORTHO05D008069 4.8e-92 342.0 284 66.2
Glyma.19G017500 Glycine max HOM05D006434 ORTHO05D008069 8.2e-92 341.3 197 84.3
CSS0001127 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 3.1e-91 339.3 221 75.1
CSS0033350 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 5.0e-89 332.0 219 74.9
HPP92_023566 Vanilla planifolia HOM05D006434 ORTHO05D008069 1.6e-87 327.0 289 58.8
Os03g0736400 Oryza sativa ssp. japonica HOM05D006434 ORTHO05D008069 4.7e-87 325.5 321 57.0
Nitab4.5_0003431g0070 Nicotiana tabacum HOM05D006434 ORTHO05D008069 2.7e-79 299.7 176 82.4
Cpa.g.sc14.62 Carica papaya HOM05D006434 ORTHO05D008069 1.2e-77 294.3 175 82.9
Ca_04243_v3 Cicer arietinum L. HOM05D006434 ORTHO05D008069 9.8e-77 291.2 224 66.1
AT3G28460 Arabidopsis thaliana HOM05D006434 ORTHO05D008069 1.3e-76 290.8 273 59.3
SalBow1G5247 Salvia bowleyana HOM05D006434 ORTHO05D008069 7.0e-75 285.0 289 54.7
Zm00001eb215320 Zea mays HOM05D006434 ORTHO05D008069 4.5e-74 282.3 261 58.2
CSS0043817 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 1.1e-72 277.7 186 73.1
Lj7A404T37 Lonicera japonica HOM05D006434 ORTHO05D008069 2.9e-68 263.1 233 62.2
SMO171G0075 Selaginella moellendorffii HOM05D006434 ORTHO05D008069 8.6e-65 251.5 199 59.3
MBI01_g13068_MAGBIO Magnolia biondii HOM05D006434 ORTHO05D008069 7.3e-64 248.4 219 60.7
Pp3c7_630 Physcomitrium patens HOM05D006434 ORTHO05D008069 3.1e-62 243.0 225 58.2
AagrBONN_evm.TU.Sc2ySwM_344.3988 Anthoceros agrestis HOM05D006434 ORTHO05D008069 1.5e-61 240.7 197 60.4
CBR_g31858 Chara braunii HOM05D006434 ORTHO05D008069 3.1e-54 216.5 243 48.6
Mapoly0140s0031 Marchantia polymorpha HOM05D006434 ORTHO05D008069 3.1e-54 216.5 210 52.9
Hund13291 Selenicereus undatus HOM05D006434 ORTHO05D008069 4.0e-54 216.1 227 56.4
SEGI_25544 Sequoiadendron giganteum HOM05D006434 ORTHO05D008069 4.1e-43 179.5 164 55.5
PRCOL_00006620 Prasinoderma coloniale HOM05D006434 ORTHO05D008069 5.6e-40 169.1 209 43.5
SEGI_38692 Sequoiadendron giganteum HOM05D006434 ORTHO05D008069 1.8e-38 164.1 125 62.4
Cre13.g566300 Chlamydomonas reinhardtii HOM05D006434 ORTHO05D008069 4.9e-36 156.0 235 39.1
Solyc01g057060.1 Solanum lycopersicum HOM05D006434 ORTHO05D008069 3.1e-30 136.7 96 70.8
MBI01_g13070_MAGBIO Magnolia biondii HOM05D006434 ORTHO05D008069 1.2e-29 134.8 86 74.4
Sopen01g021310 Solanum pennellii HOM05D006434 ORTHO05D008069 1.5e-29 134.4 91 73.6
MCO03G139 Micromonas commoda HOM05D006434 ORTHO05D008069 3.8e-28 129.8 120 50.8
MD17G1044100 Malus domestica HOM05D006434 ORTHO05D008069 6.7e-25 119.0 61 93.4
TAR371G0222 Trochodendron aralioides HOM05D006434 ORTHO05D008069 6.2e-23 112.5 75 76.0
Lj7A404T38 Lonicera japonica HOM05D006434 ORTHO05D008069 1.6e-10 71.2 143 34.3
Lsat_1_v5_gn_7_34121 Lactuca sativa HOM05D006434 ORTHO05D008069 1.8e-09 67.8 37 83.8


User provided reference genes

Program Settings