Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0169341 Rosa chinensis HOM05D004221 ORTHO05D004998 1.2e-75 286.6 154 100.0
RcHm_v2.0_Chr6g0253901 Rosa chinensis HOM05D004221 ORTHO05D004998 1.2e-75 286.6 154 100.0
RcHm_v2.0_Chr1g0343381 Rosa chinensis HOM05D004221 ORTHO05D004998 1.7e-74 282.7 154 98.7
RcHm_v2.0_Chr5g0070771 Rosa chinensis HOM05D004221 ORTHO05D004998 6.3e-74 280.8 154 98.1
RcHm_v2.0_Chr4g0389221 Rosa chinensis HOM05D004221 ORTHO05D004998 1.1e-73 280.0 151 99.3
RcHm_v2.0_Chr5g0039981 Rosa chinensis HOM05D004221 ORTHO05D004998 1.8e-73 279.3 152 98.7
RcHm_v2.0_Chr4g0391031 Rosa chinensis HOM05D004221 ORTHO05D004998 2.7e-72 275.4 154 97.4
RcHm_v2.0_Chr4g0391701 Rosa chinensis HOM05D004221 ORTHO05D004998 2.2e-71 272.3 154 96.1
RcHm_v2.0_Chr4g0446851 Rosa chinensis HOM05D004221 ORTHO05D004998 3.7e-58 228.4 122 97.5
FAN07G0046 Fragaria x ananassa HOM05D004221 ORTHO05D004998 8.3e-58 227.3 122 96.7
FAN17G0592 Fragaria x ananassa HOM05D004221 ORTHO05D004998 3.2e-57 225.3 122 95.1
FvH4_4g37090 Fragaria vesca HOM05D004221 ORTHO05D004998 1.6e-56 223.0 122 94.3
FAN03G0273 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.6e-56 223.0 122 93.4
FAN10G4155 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.6e-56 223.0 122 92.6
FAN23G3078 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.6e-56 223.0 122 93.4
FAN15G1018 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.7e-56 222.2 122 93.4
FAN07G1220 Fragaria x ananassa HOM05D004221 ORTHO05D004998 3.9e-55 218.4 121 93.4
FAN12G1261 Fragaria x ananassa HOM05D004221 ORTHO05D004998 7.3e-54 214.2 114 96.5
Prupe.1G348800 Prunus persica HOM05D004221 ORTHO05D004998 1.5e-51 206.5 122 87.7
FAN03G3278 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.6e-51 205.7 122 88.5
MD16G1003800 Malus domestica HOM05D004221 ORTHO05D004998 4.4e-51 204.9 122 86.9
FAN10G1077 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.3e-50 203.4 122 86.9
MD13G1003600 Malus domestica HOM05D004221 ORTHO05D004998 1.7e-50 203.0 122 86.1
FAN17G2528 Fragaria x ananassa HOM05D004221 ORTHO05D004998 6.4e-50 201.1 122 86.9
PGR044G1895 Punica granatum HOM05D004221 ORTHO05D004998 1.2e-48 196.8 118 84.7
THA.LOC104800677 Tarenaya hassleriana HOM05D004221 ORTHO05D004998 6.0e-48 194.5 121 80.2
Ciclev10032992m.g Citrus clementina HOM05D004221 ORTHO05D004998 3.9e-47 191.8 122 80.3
Nn3g18605 Nelumbo nucifera HOM05D004221 ORTHO05D004998 3.9e-47 191.8 115 83.5
COL.COLO4_33086 Corchorus olitorius HOM05D004221 ORTHO05D004998 5.0e-47 191.4 115 82.6
CiPaw.06G062100 Carya illinoinensis HOM05D004221 ORTHO05D004998 6.6e-47 191.0 115 85.2
Hund24383 Selenicereus undatus HOM05D004221 ORTHO05D004998 6.6e-47 191.0 115 84.3
Thecc.02G156600 Theobroma cacao HOM05D004221 ORTHO05D004998 6.6e-47 191.0 116 81.0
DCAR_023468 Daucus carota HOM05D004221 ORTHO05D004998 8.6e-47 190.7 122 80.3
Cpa.g.sc60.76 Carica papaya HOM05D004221 ORTHO05D004998 1.1e-46 190.3 118 78.8
ClCG01G008100 Citrullus lanatus HOM05D004221 ORTHO05D004998 1.1e-46 190.3 123 78.0
Nitab4.5_0000069g0160 Nicotiana tabacum HOM05D004221 ORTHO05D004998 1.5e-46 189.9 117 82.1
Gohir.A01G012400 Gossypium hirsutum HOM05D004221 ORTHO05D004998 1.9e-46 189.5 116 81.0
CSS0001435 Camellia sinensis var. sinensis HOM05D004221 ORTHO05D004998 2.5e-46 189.1 121 79.3
Eucgr.J00883 Eucalyptus grandis HOM05D004221 ORTHO05D004998 2.5e-46 189.1 115 84.3
Nitab4.5_0013217g0020 Nicotiana tabacum HOM05D004221 ORTHO05D004998 2.5e-46 189.1 115 83.5
CAN.G282.46 Capsicum annuum HOM05D004221 ORTHO05D004998 3.3e-46 188.7 115 82.6
Solyc01g008270.3 Solanum lycopersicum HOM05D004221 ORTHO05D004998 3.3e-46 188.7 115 82.6
Sopen01g003790 Solanum pennellii HOM05D004221 ORTHO05D004998 3.3e-46 188.7 115 82.6
THA.LOC104818379 Tarenaya hassleriana HOM05D004221 ORTHO05D004998 4.3e-46 188.3 119 79.0
Cfa008767 Carpinus fangiana HOM05D004221 ORTHO05D004998 5.6e-46 188.0 115 83.5
Gorai.002G015400 Gossypium raimondii HOM05D004221 ORTHO05D004998 5.6e-46 188.0 116 81.0
Gohir.D01G013600 Gossypium hirsutum HOM05D004221 ORTHO05D004998 7.3e-46 187.6 116 80.2
Hma1.2p1_0513F.1_g169420 Hydrangea macrophylla HOM05D004221 ORTHO05D004998 7.3e-46 187.6 115 82.6
Lj3A847T45 Lonicera japonica HOM05D004221 ORTHO05D004998 7.3e-46 187.6 115 80.9
Potri.005G090100 Populus trichocarpa HOM05D004221 ORTHO05D004998 7.3e-46 187.6 115 80.0
PSO017G5121 Papaver somniferum HOM05D004221 ORTHO05D004998 9.5e-46 187.2 114 83.3
PSO170G6579 Papaver somniferum HOM05D004221 ORTHO05D004998 9.5e-46 187.2 114 83.3
CANSAT78G1084 Cannabis sativa HOM05D004221 ORTHO05D004998 1.2e-45 186.8 114 85.1
PGSC0003DMG400016397 Solanum tuberosum HOM05D004221 ORTHO05D004998 1.2e-45 186.8 115 81.7
EL10Ac9g22978 Beta vulgaris HOM05D004221 ORTHO05D004998 1.6e-45 186.4 115 84.3
HanXRQChr04g0111871 Helianthus annuus HOM05D004221 ORTHO05D004998 1.6e-45 186.4 124 78.2
ECA232G2799 Erigeron canadensis HOM05D004221 ORTHO05D004998 2.1e-45 186.0 116 80.2
Lsat_1_v5_gn_4_64581 Lactuca sativa HOM05D004221 ORTHO05D004998 2.1e-45 186.0 115 81.7
Sed0003164 Sechium edule HOM05D004221 ORTHO05D004998 2.8e-45 185.7 115 80.9
Duzib052G1226 Durio zibethinus HOM05D004221 ORTHO05D004998 3.6e-45 185.3 116 78.4
Duzib132G0203 Durio zibethinus HOM05D004221 ORTHO05D004998 3.6e-45 185.3 116 78.4
Lalb_Chr06g0163921 Lupinus albus HOM05D004221 ORTHO05D004998 3.6e-45 185.3 114 82.5
Actinidia04331 Actinidia chinensis HOM05D004221 ORTHO05D004998 4.7e-45 184.9 115 80.9
Migut.E00685 Erythranthe guttata HOM05D004221 ORTHO05D004998 4.7e-45 184.9 122 77.9
AT5G23290 Arabidopsis thaliana HOM05D004221 ORTHO05D004998 6.2e-45 184.5 119 78.2
Carub.0006s2106 Capsella rubella HOM05D004221 ORTHO05D004998 6.2e-45 184.5 119 78.2
Manes.11G108400 Manihot esculenta HOM05D004221 ORTHO05D004998 6.2e-45 184.5 115 80.0
Atru.chr11.1114 Acer truncatum HOM05D004221 ORTHO05D004998 1.1e-44 183.7 156 68.6
AUR62032953 Chenopodium quinoa HOM05D004221 ORTHO05D004998 1.1e-44 183.7 115 81.7
Os10g0488100 Oryza sativa ssp. japonica HOM05D004221 ORTHO05D004998 1.1e-44 183.7 122 78.7
Dinv17642 Davidia involucrata HOM05D004221 ORTHO05D004998 1.4e-44 183.3 115 79.1
Duzib132G0545 Durio zibethinus HOM05D004221 ORTHO05D004998 1.4e-44 183.3 116 76.7
Duzib132G0858 Durio zibethinus HOM05D004221 ORTHO05D004998 1.4e-44 183.3 116 76.7
Glyma.20G103300 Glycine max HOM05D004221 ORTHO05D004998 1.4e-44 183.3 114 82.5
HPP92_005060 Vanilla planifolia HOM05D004221 ORTHO05D004998 1.4e-44 183.3 115 79.1
vmacro15987 Vaccinium macrocarpon HOM05D004221 ORTHO05D004998 1.8e-44 183.0 114 80.7
AL6G34550 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 2.3e-44 182.6 119 77.3
BcaC04g23487 Brassica carinata HOM05D004221 ORTHO05D004998 2.3e-44 182.6 119 77.3
A06p34250 Brassica napus HOM05D004221 ORTHO05D004998 2.3e-44 182.6 119 77.3
C07p44270 Brassica napus HOM05D004221 ORTHO05D004998 2.3e-44 182.6 119 77.3
C09p07830 Brassica napus HOM05D004221 ORTHO05D004998 2.3e-44 182.6 119 77.3
BolC7t44950H Brassica oleracea HOM05D004221 ORTHO05D004998 2.3e-44 182.6 119 77.3
BolC9t53699H Brassica oleracea HOM05D004221 ORTHO05D004998 2.3e-44 182.6 119 77.3
BraA06t26357Z Brassica rapa HOM05D004221 ORTHO05D004998 2.3e-44 182.6 119 77.3
Potri.007G074042 Populus trichocarpa HOM05D004221 ORTHO05D004998 2.3e-44 182.6 115 77.4
SGA_v2.0_scaffold256G45657 Striga asiatica HOM05D004221 ORTHO05D004998 2.3e-44 182.6 120 76.7
MSTRG.13679 Avicennia marina HOM05D004221 ORTHO05D004998 3.1e-44 182.2 122 77.0
BcaB04g19880 Brassica carinata HOM05D004221 ORTHO05D004998 3.1e-44 182.2 122 75.4
CsaV3_5G020730 Cucumis sativus L. HOM05D004221 ORTHO05D004998 3.1e-44 182.2 119 75.6
Thhalv10005074m.g Eutrema salsugineum HOM05D004221 ORTHO05D004998 3.1e-44 182.2 119 77.3
Medtr1g114500 Medicago truncatula HOM05D004221 ORTHO05D004998 4.0e-44 181.8 114 79.8
Sabra07G0062100 Salix brachista HOM05D004221 ORTHO05D004998 5.2e-44 181.4 115 77.4
Zm00001eb045320 Zea mays HOM05D004221 ORTHO05D004998 5.2e-44 181.4 122 77.9
Actinidia04067 Actinidia chinensis HOM05D004221 ORTHO05D004998 6.8e-44 181.0 115 79.1
Cc00_g07040 Coffea canephora HOM05D004221 ORTHO05D004998 6.8e-44 181.0 137 73.0
TAR629G0713 Trochodendron aralioides HOM05D004221 ORTHO05D004998 6.8e-44 181.0 115 80.0
Aa31LG11G2750 Aethionema arabicum HOM05D004221 ORTHO05D004998 8.9e-44 180.6 119 78.2
TWI74G0522 Tripterygium wilfordii HOM05D004221 ORTHO05D004998 8.9e-44 180.6 120 75.0
Lj5g0004809 Lotus japonicus HOM05D004221 ORTHO05D004998 1.2e-43 180.3 114 80.7
TAR629G3528 Trochodendron aralioides HOM05D004221 ORTHO05D004998 1.2e-43 180.3 115 80.0
arahy.Tifrunner.gnm1.ann1.8BKN44 Arachis hypogaea HOM05D004221 ORTHO05D004998 1.5e-43 179.9 114 80.7
arahy.Tifrunner.gnm1.ann1.G8X8S8 Arachis hypogaea HOM05D004221 ORTHO05D004998 1.5e-43 179.9 114 80.7
arahy.Tifrunner.gnm1.ann1.VLL77W Arachis hypogaea HOM05D004221 ORTHO05D004998 1.5e-43 179.9 114 80.7
A09p07020 Brassica napus HOM05D004221 ORTHO05D004998 1.5e-43 179.9 119 76.5
BraA09t36350Z Brassica rapa HOM05D004221 ORTHO05D004998 1.5e-43 179.9 119 76.5
CARHR190250 Cardamine hirsuta HOM05D004221 ORTHO05D004998 1.5e-43 179.9 119 76.5
Rhsim09G0069500 Rhododendron simsii HOM05D004221 ORTHO05D004998 1.5e-43 179.9 114 78.9
TWI77G0364 Tripterygium wilfordii HOM05D004221 ORTHO05D004998 1.5e-43 179.9 120 75.0
GSVIVG01026144001 Vitis vinifera HOM05D004221 ORTHO05D004998 1.5e-43 179.9 111 81.1
Psat6g233960 Pisum sativum HOM05D004221 ORTHO05D004998 2.6e-43 179.1 114 78.9
Aqoxy3G04291 Aquilegia oxysepala HOM05D004221 ORTHO05D004998 5.8e-43 177.9 114 78.1
Glyma.10G286000 Glycine max HOM05D004221 ORTHO05D004998 5.8e-43 177.9 114 79.8
Sc26g0002050 Simmondsia chinensis HOM05D004221 ORTHO05D004998 5.8e-43 177.9 114 79.8
CDE02G2963 Ceratophyllum demersum HOM05D004221 ORTHO05D004998 9.8e-43 177.2 114 77.2
Ca_11255_v3 Cicer arietinum L. HOM05D004221 ORTHO05D004998 1.3e-42 176.8 114 79.8
TPR.G4058 Trifolium pratense HOM05D004221 ORTHO05D004998 1.3e-42 176.8 114 77.2
ATR0618G284 Amborella trichopoda HOM05D004221 ORTHO05D004998 1.7e-42 176.4 123 75.6
Sp2g23860 Schrenkiella parvula HOM05D004221 ORTHO05D004998 2.2e-42 176.0 119 75.6
VMungo0720G0328 Vigna mungo HOM05D004221 ORTHO05D004998 2.2e-42 176.0 114 78.1
Phvul.007G014900 Phaseolus vulgaris HOM05D004221 ORTHO05D004998 2.9e-42 175.6 114 78.1
AUR62017728 Chenopodium quinoa HOM05D004221 ORTHO05D004998 3.7e-42 175.3 115 80.9
SalBow2G0865 Salvia bowleyana HOM05D004221 ORTHO05D004998 8.3e-42 174.1 142 66.9
Haze_11779 Corylus avellana HOM05D004221 ORTHO05D004998 1.9e-41 172.9 147 66.0
MBI06_g27498_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 4.1e-41 171.8 123 74.8
AL2G24680 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 7.1e-41 171.0 116 73.3
AL8G16830 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 7.1e-41 171.0 116 73.3
unitig_699.g19553 Utricularia gibba HOM05D004221 ORTHO05D004998 7.1e-41 171.0 121 71.9
Sabra05G0074200 Salix brachista HOM05D004221 ORTHO05D004998 3.0e-39 165.6 155 59.4
CDE04G0710 Ceratophyllum demersum HOM05D004221 ORTHO05D004998 6.2e-37 157.9 125 65.6
Mapoly0041s0007 Marchantia polymorpha HOM05D004221 ORTHO05D004998 2.3e-36 156.0 115 67.8
Pp3c1_32320 Physcomitrium patens HOM05D004221 ORTHO05D004998 6.8e-36 154.5 115 68.7
SMO114G0084 Selaginella moellendorffii HOM05D004221 ORTHO05D004998 8.9e-36 154.1 115 65.2
SEGI_18337 Sequoiadendron giganteum HOM05D004221 ORTHO05D004998 8.9e-36 154.1 119 63.0
SGA_v2.0_scaffold358G49836 Striga asiatica HOM05D004221 ORTHO05D004998 1.2e-35 153.7 157 56.1
AagrBONN_evm.TU.Sc2ySwM_117.4013 Anthoceros agrestis HOM05D004221 ORTHO05D004998 9.9e-35 150.6 115 62.6
Ah.01g012690 Amaranthus hybridus HOM05D004221 ORTHO05D004998 2.9e-34 149.1 88 87.5
TAR371G0536 Trochodendron aralioides HOM05D004221 ORTHO05D004998 8.4e-34 147.5 115 67.0
Peaxi162Scf00021g02223 Petunia axillaris HOM05D004221 ORTHO05D004998 1.6e-32 143.3 115 67.8
RcHm_v2.0_Chr5g0067401 Rosa chinensis HOM05D004221 ORTHO05D004998 2.1e-32 142.9 78 98.7
RcHm_v2.0_Chr6g0266371 Rosa chinensis HOM05D004221 ORTHO05D004998 2.1e-32 142.9 78 98.7
Oeu013195.1 Olea europaea HOM05D004221 ORTHO05D004998 6.0e-32 141.4 87 82.8
AUR62032946 Chenopodium quinoa HOM05D004221 ORTHO05D004998 1.3e-31 140.2 88 81.8
RcHm_v2.0_Chr3g0478071 Rosa chinensis HOM05D004221 ORTHO05D004998 1.3e-31 140.2 78 96.2
Oeu041209.1 Olea europaea HOM05D004221 ORTHO05D004998 3.6e-29 132.1 96 77.1
RcHm_v2.0_Chr6g0274601 Rosa chinensis HOM05D004221 ORTHO05D004998 3.1e-28 129.0 72 97.2
SHI21211 Sapria himalayana HOM05D004221 ORTHO05D004998 8.4e-26 120.9 209 39.2
MELO3C000273.2 Cucumis melo HOM05D004221 ORTHO05D004998 2.7e-24 115.9 70 81.4
Lj9A327T34 Lonicera japonica HOM05D004221 ORTHO05D004998 3.9e-23 112.1 77 75.3
CBR_g19844 Chara braunii HOM05D002142 ORTHO05D001189 6.2e-21 104.8 123 46.3
MELO3C033736.2 Cucumis melo HOM05D004221 ORTHO05D004998 8.1e-21 104.4 64 81.2
MCO07G569 Micromonas commoda HOM05D004221 ORTHO05D004998 9.0e-20 100.9 114 43.9
SEGI_37490 Sequoiadendron giganteum HOM05D004221 ORTHO05D004998 2.2e-18 96.3 61 68.9
Gorai.002G209700 Gossypium raimondii HOM05D004221 ORTHO05D004998 1.0e-15 87.4 59 67.8
Gohir.D01G168833 Gossypium hirsutum HOM05D004221 ORTHO05D004998 1.3e-15 87.0 59 67.8
PRCOL_00006790 Prasinoderma coloniale HOM05D004221 ORTHO05D004998 1.1e-14 84.0 117 38.5
Gohir.A01G178033 Gossypium hirsutum HOM05D004221 ORTHO05D004998 3.3e-14 82.4 59 64.4
MBI19_g48155_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 4.3e-14 82.0 69 68.1
MBI19_g31737_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 2.8e-13 79.3 69 66.7
Sed0018067 Sechium edule HOM05D004221 ORTHO05D004998 1.4e-12 77.0 54 72.2
AL1G29290 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 3.1e-12 75.9 53 73.6
AL8G24780 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 3.1e-12 75.9 53 73.6
A02p41030 Brassica napus HOM05D004221 ORTHO05D004998 9.0e-12 74.3 51 66.7
Cre12.g523150 Chlamydomonas reinhardtii HOM05D004221 ORTHO05D004998 1.5e-11 73.6 108 34.3
FAN03G3288 Fragaria x ananassa HOM05D004221 ORTHO05D205401 1.1e-09 67.4 38 94.7
SalBow6G4331 Salvia bowleyana HOM05D004221 ORTHO05D004998 5.1e-07 58.5 52 59.6
SalBow3G1738 Salvia bowleyana HOM05D004221 ORTHO05D004998 3.3e-06 55.8 47 55.3


User provided reference genes

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