Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0169251 Rosa chinensis HOM05D002474 ORTHO05D006727 1.0e-279 966.1 486 100.0
FvH4_6g49390 Fragaria vesca HOM05D002474 ORTHO05D006727 1.1e-260 902.9 486 93.2
FAN02G0112 Fragaria x ananassa HOM05D002474 ORTHO05D006727 4.7e-240 834.3 486 88.1
FAN14G2185 Fragaria x ananassa HOM05D002474 ORTHO05D006727 4.5e-235 817.8 518 82.8
FAN09G4837 Fragaria x ananassa HOM05D002474 ORTHO05D006727 6.1e-224 780.8 518 80.1
FAN05G2709 Fragaria x ananassa HOM05D002474 ORTHO05D006727 3.3e-217 758.4 487 82.1
QL02p080225 Quercus lobata HOM05D002474 ORTHO05D006727 1.1e-204 716.8 478 73.6
Atru.chr8.2476 Acer truncatum HOM05D002474 ORTHO05D006727 7.8e-195 684.1 480 70.6
Thecc.09G254500 Theobroma cacao HOM05D002474 ORTHO05D006727 1.3e-194 683.3 479 70.8
Nn4g23008 Nelumbo nucifera HOM05D002474 ORTHO05D006727 4.7e-192 674.9 478 69.7
GSVIVG01032597001 Vitis vinifera HOM05D002474 ORTHO05D006727 1.7e-186 656.4 418 75.4
CSS0021046 Camellia sinensis var. sinensis HOM05D002474 ORTHO05D006727 3.9e-186 655.2 478 68.0
Migut.K01338 Erythranthe guttata HOM05D002474 ORTHO05D006727 8.7e-186 654.1 472 67.8
Solyc02g067480.3 Solanum lycopersicum HOM05D002474 ORTHO05D006727 1.5e-185 653.3 476 66.8
Sopen02g016630 Solanum pennellii HOM05D002474 ORTHO05D006727 4.3e-185 651.7 476 66.8
Cfa007503 Carpinus fangiana HOM05D002474 ORTHO05D006727 5.6e-185 651.4 511 66.3
Gorai.013G255100 Gossypium raimondii HOM05D002474 ORTHO05D006727 1.3e-184 650.2 479 68.1
PGSC0003DMG400006940 Solanum tuberosum HOM05D002474 ORTHO05D006727 1.6e-184 649.8 476 66.6
Hma1.2p1_0449F.1_g154950 Hydrangea macrophylla HOM05D002474 ORTHO05D006727 3.6e-184 648.7 430 74.2
Potri.004G130000 Populus trichocarpa HOM05D002474 ORTHO05D006727 4.8e-184 648.3 480 67.1
MELO3C021965.2 Cucumis melo HOM05D002474 ORTHO05D006727 1.1e-183 647.1 424 73.1
ECA246G0556 Erigeron canadensis HOM05D002474 ORTHO05D006727 1.8e-183 646.4 479 66.4
Oeu033341.3 Olea europaea HOM05D002474 ORTHO05D006727 2.4e-183 646.0 512 63.3
CAN.G1128.5 Capsicum annuum HOM05D002474 ORTHO05D006727 9.0e-183 644.0 476 65.8
Ciclev10011620m.g Citrus clementina HOM05D002474 ORTHO05D006727 1.5e-182 643.3 477 67.9
CsaV3_5G037800 Cucumis sativus L. HOM05D002474 ORTHO05D006727 1.5e-182 643.3 427 72.6
Phvul.004G025500 Phaseolus vulgaris HOM05D002474 ORTHO05D006727 1.5e-182 643.3 444 70.7
Eucgr.J02138 Eucalyptus grandis HOM05D002474 ORTHO05D006727 2.6e-182 642.5 475 67.6
Gohir.A13G220300 Gossypium hirsutum HOM05D002474 ORTHO05D006727 5.8e-182 641.3 479 67.4
Nitab4.5_0006062g0010 Nicotiana tabacum HOM05D002474 ORTHO05D006727 7.6e-182 641.0 472 66.9
TPR.G4252 Trifolium pratense HOM05D002474 ORTHO05D006727 2.9e-181 639.0 436 69.7
CiPaw.04G020500 Carya illinoinensis HOM05D002474 ORTHO05D006727 4.9e-181 638.3 472 69.5
HanXRQChr17g0547501 Helianthus annuus HOM05D002474 ORTHO05D006727 6.4e-181 637.9 479 64.9
Lalb_Chr06g0175531 Lupinus albus HOM05D002474 ORTHO05D006727 1.2e-179 633.6 426 71.1
Psat1g077640 Pisum sativum HOM05D002474 ORTHO05D006727 1.6e-179 633.3 437 69.1
Lsat_1_v5_gn_3_102300 Lactuca sativa HOM05D002474 ORTHO05D006727 2.7e-179 632.5 474 65.4
Medtr6g011270 Medicago truncatula HOM05D002474 ORTHO05D006727 3.5e-179 632.1 446 68.2
Nitab4.5_0002699g0040 Nicotiana tabacum HOM05D002474 ORTHO05D006727 4.6e-179 631.7 435 69.7
Sc11g0006920 Simmondsia chinensis HOM05D002474 ORTHO05D006727 5.1e-178 628.2 452 68.6
Aqoxy3G00804 Aquilegia oxysepala HOM05D002474 ORTHO05D006727 1.1e-177 627.1 413 73.6
PSO478G4089 Papaver somniferum HOM05D002474 ORTHO05D006727 1.9e-177 626.3 417 71.7
Haze_14590 Corylus avellana HOM05D002474 ORTHO05D006727 2.5e-177 625.9 483 67.1
TAR629G1594 Trochodendron aralioides HOM05D002474 ORTHO05D006727 7.4e-177 624.4 435 70.6
Gohir.D13G224300 Gossypium hirsutum HOM05D002474 ORTHO05D006727 1.6e-176 623.2 488 65.6
arahy.Tifrunner.gnm1.ann1.B2F8E8 Arachis hypogaea HOM05D002474 ORTHO05D006727 2.8e-176 622.5 439 69.7
PSO161G0033 Papaver somniferum HOM05D002474 ORTHO05D006727 2.4e-175 619.4 417 71.0
RhsimUnG0054500 Rhododendron simsii HOM05D002474 ORTHO05D006727 7.6e-174 614.4 503 61.2
Lj2g0026556 Lotus japonicus HOM05D002474 ORTHO05D006727 1.7e-173 613.2 414 70.3
Ca_04259_v3 Cicer arietinum L. HOM05D002474 ORTHO05D006727 4.9e-173 611.7 447 66.7
Prupe.3G272800 Prunus persica HOM05D002474 ORTHO05D006727 1.1e-172 610.5 374 83.2
Duzib168G1861 Durio zibethinus HOM05D002474 ORTHO05D006727 1.2e-171 607.1 480 64.8
unitig_748.g8621 Utricularia gibba HOM05D002474 ORTHO05D006727 1.6e-171 606.7 425 67.8
Nitab4.5_0023901g0010 Nicotiana tabacum HOM05D002474 ORTHO05D006727 2.3e-170 602.8 406 70.9
THA.LOC104805441 Tarenaya hassleriana HOM05D002474 ORTHO05D006727 1.5e-169 600.1 461 63.3
PGR083G0251 Punica granatum HOM05D002474 ORTHO05D006727 2.5e-169 599.4 469 65.5
COL.COLO4_24935 Corchorus olitorius HOM05D002474 ORTHO05D006727 6.2e-168 594.7 425 68.7
Carub.0007s3579 Capsella rubella HOM05D002474 ORTHO05D006727 1.5e-166 590.1 452 64.4
Sabra04G0087600 Salix brachista HOM05D002474 ORTHO05D006727 1.5e-166 590.1 528 58.3
Cpa.g.sc14.49 Carica papaya HOM05D002474 ORTHO05D006727 2.2e-165 586.3 493 61.9
AL7G50200 Arabidopsis lyrata HOM05D002474 ORTHO05D006727 1.9e-164 583.2 445 64.3
Hund13252 Selenicereus undatus HOM05D002474 ORTHO05D006727 1.9e-164 583.2 507 59.0
SGA_v2.0_scaffold224G42953 Striga asiatica HOM05D002474 ORTHO05D006727 1.9e-164 583.2 437 66.4
CANSAT64G2711 Cannabis sativa HOM05D002474 ORTHO05D006727 2.5e-164 582.8 476 64.1
CARHR262240 Cardamine hirsuta HOM05D002474 ORTHO05D006727 2.7e-163 579.3 424 65.6
Aa31LG9G1670 Aethionema arabicum HOM05D002474 ORTHO05D006727 6.0e-163 578.2 443 65.0
arahy.Tifrunner.gnm1.ann1.DRNA5E Arachis hypogaea HOM05D002474 ORTHO05D006727 7.9e-163 577.8 464 63.4
Os12g0638800 Oryza sativa ssp. japonica HOM05D002474 ORTHO05D006727 1.3e-162 577.0 434 63.8
CDE08G1502 Ceratophyllum demersum HOM05D002474 ORTHO05D006727 3.0e-162 575.9 426 63.4
TWI60G0106 Tripterygium wilfordii HOM05D002474 ORTHO05D006727 3.9e-162 575.5 469 63.1
Ah.12g065360 Amaranthus hybridus HOM05D002474 ORTHO05D006727 7.4e-161 571.2 428 66.1
VMungo0464G0136 Vigna mungo HOM05D002474 ORTHO05D006727 1.3e-160 570.5 503 59.0
Zm00001eb033100 Zea mays HOM05D002474 ORTHO05D006727 1.3e-160 570.5 503 56.9
AT5G39940 Arabidopsis thaliana HOM05D002474 ORTHO05D006727 2.8e-160 569.3 453 61.6
BraA04t16928Z Brassica rapa HOM05D002474 ORTHO05D006727 3.7e-160 568.9 445 62.9
Glyma.19G019000 Glycine max HOM05D002474 ORTHO05D006727 1.1e-159 567.4 449 63.7
Thhalv10028129m.g Eutrema salsugineum HOM05D002474 ORTHO05D006727 3.4e-158 562.4 442 63.1
ATR0609G116 Amborella trichopoda HOM05D002474 ORTHO05D006727 1.4e-156 557.0 455 60.4
EL10Ac2g02929 Beta vulgaris HOM05D002474 ORTHO05D006727 1.2e-155 553.9 433 64.2
Peaxi162Scf00059g00319 Petunia axillaris HOM05D002474 ORTHO05D006727 1.0e-154 550.8 455 61.5
Rhsim10G0032000 Rhododendron simsii HOM05D002474 ORTHO05D006727 1.5e-153 547.0 476 59.2
Sed0010242 Sechium edule HOM05D002474 ORTHO05D006727 2.2e-152 543.1 378 69.0
Dinv33713 Davidia involucrata HOM05D002474 ORTHO05D006727 3.7e-152 542.3 346 76.0
AUR62031654 Chenopodium quinoa HOM05D002474 ORTHO05D006727 4.8e-152 542.0 429 62.7
ClCG09G018440 Citrullus lanatus HOM05D002474 ORTHO05D006727 2.4e-151 539.7 568 51.8
DCAR_011168 Daucus carota HOM05D002474 ORTHO05D006727 2.4e-151 539.7 404 65.6
CSS0037906 Camellia sinensis var. sinensis HOM05D002474 ORTHO05D006727 5.9e-150 535.0 348 75.3
BcaB06g27397 Brassica carinata HOM05D002474 ORTHO05D006727 1.8e-143 513.5 440 58.9
C04p46420 Brassica napus HOM05D002474 ORTHO05D006727 5.9e-142 508.4 404 61.6
A04p12710 Brassica napus HOM05D002474 ORTHO05D006727 2.2e-136 490.0 404 59.4
AagrBONN_evm.TU.Sc2ySwM_369.199 Anthoceros agrestis HOM05D002474 ORTHO05D006727 5.9e-134 481.9 418 54.1
vmacro05750 Vaccinium macrocarpon HOM05D002474 ORTHO05D006727 2.9e-133 479.6 438 56.2
Pp3c23_2270 Physcomitrium patens HOM05D002474 ORTHO05D006727 8.2e-128 461.5 421 53.0
SalBow1G0883 Salvia bowleyana HOM05D002474 ORTHO05D006727 1.4e-127 460.7 478 53.8
HanXRQChr16g0519921 Helianthus annuus HOM05D002474 ORTHO05D006727 4.1e-127 459.1 324 68.2
AUR62018296 Chenopodium quinoa HOM05D002474 ORTHO05D006727 2.2e-125 453.4 428 55.1
Mapoly0035s0063 Marchantia polymorpha HOM05D002474 ORTHO05D006727 1.6e-123 447.2 411 52.1
Hma1.2p1_0449F.1_g154940 Hydrangea macrophylla HOM05D002474 ORTHO05D006727 1.5e-116 424.1 323 66.9
SMO137G0254 Selaginella moellendorffii HOM05D002474 ORTHO05D006727 1.5e-113 414.1 465 45.6
Manes.S095220 Manihot esculenta HOM05D002474 ORTHO05D006727 2.8e-112 409.8 307 69.1
HPP92_014139 Vanilla planifolia HOM05D002474 ORTHO05D006727 2.7e-102 376.7 467 44.5
QL02p080117 Quercus lobata HOM05D002474 ORTHO05D006727 1.7e-101 374.0 267 70.4
Cc07_g02920 Coffea canephora HOM05D002474 ORTHO05D006727 6.8e-98 362.1 284 63.7
QL02p080121 Quercus lobata HOM05D002474 ORTHO05D006727 8.9e-82 308.5 191 75.9
CBR_g50657 Chara braunii HOM05D002474 ORTHO05D006727 7.8e-78 295.4 311 49.2
Cc07_g02930 Coffea canephora HOM05D002474 ORTHO05D006727 3.3e-76 290.0 184 73.9
Rhsim10G0031600 Rhododendron simsii HOM05D002474 ORTHO05D006727 1.8e-74 284.3 257 56.8
Lj7A402G46 Lonicera japonica HOM05D002474 ORTHO05D006727 5.3e-66 256.1 298 50.3
Hund13251 Selenicereus undatus HOM05D002474 ORTHO05D006727 4.5e-65 253.1 195 63.1
BolC4t26228H Brassica oleracea HOM05D002474 ORTHO05D006727 4.0e-58 229.9 191 60.2
Lsat_1_v5_gn_6_77521 Lactuca sativa HOM05D002474 ORTHO05D006727 6.0e-46 189.5 260 42.7
SpUN0485_0010 Schrenkiella parvula HOM05D002474 ORTHO05D006727 9.7e-44 182.2 134 65.7
CBR_g59258 Chara braunii HOM05D002474 ORTHO05D006727 3.4e-41 173.7 125 63.2
HanXRQChr09g0265421 Helianthus annuus HOM05D002474 ORTHO05D006727 2.1e-38 164.5 121 62.8
Lj7A402G47 Lonicera japonica HOM05D002474 ORTHO05D006727 4.6e-38 163.3 124 61.3
SEGI_13584 Sequoiadendron giganteum HOM05D002474 ORTHO05D006727 2.2e-35 154.5 145 51.0
Actinidia35021 Actinidia chinensis HOM05D002474 ORTHO05D006727 1.2e-33 148.7 287 38.3
Sp7g01810 Schrenkiella parvula HOM05D002474 ORTHO05D006727 2.6e-33 147.5 134 56.7
SEGI_37465 Sequoiadendron giganteum HOM05D002474 ORTHO05D006727 7.2e-31 139.4 87 64.4
Lsat_1_v5_gn_2_107941 Lactuca sativa HOM05D002474 ORTHO05D005260 1.8e-29 134.8 236 35.6
C09p60950 Brassica napus HOM05D002474 ORTHO05D006727 4.4e-28 130.2 111 57.7
MCO07G529 Micromonas commoda HOM05D002474 ORTHO05D006727 3.7e-27 127.1 473 28.8
BolC9t56457H Brassica oleracea HOM05D002474 ORTHO05D006727 1.9e-23 114.8 103 55.3
MBI04_g20672_MAGBIO Magnolia biondii HOM05D002474 ORTHO05D006727 6.1e-22 109.8 223 34.1
FAN10G3970 Fragaria x ananassa HOM05D002474 ORTHO05D006727 1.0e-21 109.0 60 91.7
C09p36190 Brassica napus HOM05D002474 ORTHO05D006727 4.4e-20 103.6 96 54.2
FAN10G3068 Fragaria x ananassa HOM05D002474 ORTHO05D006727 1.2e-17 95.5 50 94.0
PRCOL_00006911 Prasinoderma coloniale HOM05D002474 ORTHO05D006727 5.9e-17 93.2 477 23.3
MBI04_g20673_MAGBIO Magnolia biondii HOM05D002474 ORTHO05D006727 1.1e-15 89.0 77 53.2
BcaC04g18910 Brassica carinata HOM05D002474 ORTHO05D006727 2.5e-15 87.8 110 44.5
Rhsim10G0031800 Rhododendron simsii HOM05D002474 ORTHO05D006727 1.0e-13 82.4 53 66.0
Cre09.g389400 Chlamydomonas reinhardtii HOM05D002474 ORTHO05D006727 2.0e-12 78.2 283 23.3
Peaxi162Scf00036g01918 Petunia axillaris HOM05D002474 ORTHO05D006727 1.3e-11 75.5 61 50.8
FAN01G1046 Fragaria x ananassa HOM05D002474 ORTHO05D006727 2.8e-11 74.3 41 90.2
Peaxi162Scf00781g00210 Petunia axillaris HOM05D002474 ORTHO05D006727 1.8e-10 71.6 56 51.8
vmacro05749 Vaccinium macrocarpon HOM05D002474 ORTHO05D006727 5.0e-08 63.5 34 88.2
vmacro03926 Vaccinium macrocarpon HOM05D002474 ORTHO05D006727 3.2e-07 60.8 34 82.4


User provided reference genes

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