Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0169041 Rosa chinensis HOM05D007272 ORTHO05D009305 0.0e+00 1105.5 553 100.0
FvH4_6g49170 Fragaria vesca HOM05D007272 ORTHO05D009305 5.1e-259 897.5 501 89.0
FAN14G5197 Fragaria x ananassa HOM05D007272 ORTHO05D009305 1.9e-258 895.6 501 88.8
FAN02G2692 Fragaria x ananassa HOM05D001960 ORTHO05D004348 1.7e-254 882.5 501 87.8
FAN05G2713 Fragaria x ananassa HOM05D007272 ORTHO05D009305 1.4e-253 879.4 501 87.6
FAN09G2990 Fragaria x ananassa HOM05D007272 ORTHO05D009305 7.5e-210 734.2 410 88.8
Prupe.3G271100 Prunus persica HOM05D007272 ORTHO05D009305 9.2e-192 674.1 508 68.5
MD17G1048000 Malus domestica HOM05D007272 ORTHO05D009305 1.4e-179 633.6 512 64.1
Haze_14576 Corylus avellana HOM05D007272 ORTHO05D009305 7.9e-167 591.3 494 61.7
Manes.17G022200 Manihot esculenta HOM05D007272 ORTHO05D009305 1.7e-166 590.1 507 59.4
TWI34G0655 Tripterygium wilfordii HOM05D007272 ORTHO05D009305 5.1e-166 588.6 499 61.7
Cfa007518 Carpinus fangiana HOM05D007272 ORTHO05D009305 1.9e-165 586.6 486 61.5
QL02p080768 Quercus lobata HOM05D007272 ORTHO05D009305 8.1e-164 581.3 486 62.3
Potri.017G079100 Populus trichocarpa HOM05D007272 ORTHO05D009305 3.1e-163 579.3 499 60.7
GSVIVG01011351001 Vitis vinifera HOM05D007272 ORTHO05D009305 1.2e-162 577.4 491 59.7
Actinidia23567 Actinidia chinensis HOM05D007272 ORTHO05D009305 5.8e-162 575.1 493 59.2
PGR142G3376 Punica granatum HOM05D007272 ORTHO05D009305 1.4e-160 570.5 515 58.4
Ciclev10011541m.g Citrus clementina HOM05D007272 ORTHO05D009305 1.6e-159 567.0 515 59.2
Duzib187G0958 Durio zibethinus HOM05D007272 ORTHO05D009305 6.0e-159 565.1 507 60.0
CiPaw.04G019400 Carya illinoinensis HOM05D007272 ORTHO05D009305 1.8e-158 563.5 496 59.5
vmacro05725 Vaccinium macrocarpon HOM05D007272 ORTHO05D009305 2.3e-158 563.1 514 57.4
TAR629G0691 Trochodendron aralioides HOM05D007272 ORTHO05D009305 3.9e-158 562.4 501 57.1
Hma1.2p1_0449F.1_g155160 Hydrangea macrophylla HOM05D007272 ORTHO05D009305 6.7e-158 561.6 515 58.3
Sabra17G0070200 Salix brachista HOM05D007272 ORTHO05D009305 2.1e-156 556.6 503 57.3
Thecc.04G075900 Theobroma cacao HOM05D007272 ORTHO05D009305 1.5e-154 550.4 506 59.1
Lj7C400T1 Lonicera japonica HOM05D007272 ORTHO05D009305 1.7e-153 547.0 482 58.3
Gorai.006G025400 Gossypium raimondii HOM05D007272 ORTHO05D009305 9.3e-152 541.2 510 58.4
Cpa.g.sc14.36 Carica papaya HOM05D007272 ORTHO05D009305 1.6e-151 540.4 471 60.5
Sc10g0003770 Simmondsia chinensis HOM05D007272 ORTHO05D009305 8.7e-150 534.6 498 57.6
AUR62031636 Chenopodium quinoa HOM05D007272 ORTHO05D009305 2.5e-149 533.1 502 54.2
DCAR_021668 Daucus carota HOM05D007272 ORTHO05D009305 5.7e-149 531.9 489 55.8
Gohir.A09G022200 Gossypium hirsutum HOM05D007272 ORTHO05D009305 2.8e-148 529.6 510 57.8
Ah.10g031300 Amaranthus hybridus HOM05D007272 ORTHO05D009305 3.7e-148 529.3 491 55.6
Nn3g17142 Nelumbo nucifera HOM05D007272 ORTHO05D009305 2.4e-147 526.6 500 54.8
Phvul.004G026700 Phaseolus vulgaris HOM05D007272 ORTHO05D009305 3.4e-146 522.7 518 55.2
HanXRQChr14g0449311 Helianthus annuus HOM05D007272 ORTHO05D009305 1.9e-144 516.9 500 54.4
Glyma.13G064500 Glycine max HOM05D007272 ORTHO05D009305 4.6e-143 512.3 504 55.8
QL02p080779 Quercus lobata HOM05D007272 ORTHO05D009305 1.3e-142 510.8 558 52.2
Lsat_1_v5_gn_2_88701 Lactuca sativa HOM05D007272 ORTHO05D009305 1.6e-140 503.8 507 54.8
RhsimUnG0199700 Rhododendron simsii HOM05D007272 ORTHO05D009305 3.7e-140 502.7 566 49.5
Hund13235 Selenicereus undatus HOM05D007272 ORTHO05D009305 3.7e-140 502.7 475 53.1
Cc07_g03090 Coffea canephora HOM05D007272 ORTHO05D009305 1.5e-138 497.3 494 54.0
Gohir.D09G021400 Gossypium hirsutum HOM05D007272 ORTHO05D009305 3.4e-138 496.1 466 58.8
Lj2g0023599 Lotus japonicus HOM05D007272 ORTHO05D009305 1.0e-137 494.6 519 53.4
MSTRG.3220 Avicennia marina HOM05D007272 ORTHO05D009305 1.2e-135 487.6 557 49.6
ECA238G2465 Erigeron canadensis HOM05D007272 ORTHO05D009305 1.6e-135 487.3 482 54.4
THA.LOC104822369 Tarenaya hassleriana HOM05D007272 ORTHO05D009305 3.6e-135 486.1 490 53.5
Nitab4.5_0009739g0030 Nicotiana tabacum HOM05D007272 ORTHO05D009305 4.6e-135 485.7 507 50.7
ClCG10G014870 Citrullus lanatus HOM05D007272 ORTHO05D009305 3.0e-134 483.0 504 53.2
EL10Ac2g02942 Beta vulgaris HOM05D007272 ORTHO05D009305 3.9e-134 482.6 501 52.5
Dinv33728 Davidia involucrata HOM05D007272 ORTHO05D009305 1.1e-133 481.1 353 66.9
Lalb_Chr21g0318941 Lupinus albus HOM05D007272 ORTHO05D009305 1.3e-132 477.6 489 53.4
RhsimUnG0056400 Rhododendron simsii HOM05D007272 ORTHO05D009305 1.3e-132 477.6 619 45.7
Ca_04270_v3 Cicer arietinum L. HOM05D007272 ORTHO05D009305 2.2e-132 476.9 495 52.9
Lj2g0009951 Lotus japonicus HOM05D007272 ORTHO05D009305 2.8e-132 476.5 499 52.9
SalBow1G7111 Salvia bowleyana HOM05D007272 ORTHO05D009305 9.1e-131 471.5 500 51.6
Solyc02g087730.3 Solanum lycopersicum HOM05D007272 ORTHO05D009305 2.0e-130 470.3 496 51.2
Migut.H00895 Erythranthe guttata HOM05D007272 ORTHO05D009305 3.4e-130 469.5 495 51.1
arahy.Tifrunner.gnm1.ann1.UFNR33 Arachis hypogaea HOM05D007272 ORTHO05D009305 1.0e-129 468.0 525 50.7
TPR.G4317 Trifolium pratense HOM05D007272 ORTHO05D009305 2.9e-129 466.5 488 51.4
Sopen02g032460 Solanum pennellii HOM05D007272 ORTHO05D009305 3.8e-129 466.1 515 49.7
CANSAT64G0717 Cannabis sativa HOM05D007272 ORTHO05D009305 3.6e-127 459.5 476 50.6
Peaxi162Scf00129g00431 Petunia axillaris HOM05D007272 ORTHO05D009305 1.1e-125 454.5 524 49.8
PSO591G0492 Papaver somniferum HOM05D007272 ORTHO05D009305 7.4e-125 451.8 483 52.0
Psat1g075440 Pisum sativum HOM05D007272 ORTHO05D009305 1.5e-120 437.6 485 50.1
SGA_v2.0_scaffold135G34775 Striga asiatica HOM05D007118 ORTHO05D008957 3.2e-120 436.4 504 48.0
MD09G1047900 Malus domestica HOM05D007272 ORTHO05D009305 5.5e-120 435.6 522 49.8
Oeu037173.1 Olea europaea HOM05D007272 ORTHO05D009305 1.2e-119 434.5 499 49.1
Gorai.012G056400 Gossypium raimondii HOM05D007272 ORTHO05D009305 5.7e-117 425.6 465 52.5
Gohir.D04G050866 Gossypium hirsutum HOM05D007272 ORTHO05D009305 1.7e-116 424.1 465 52.3
arahy.Tifrunner.gnm1.ann1.091QIK Arachis hypogaea HOM05D007272 ORTHO05D009305 2.2e-116 423.7 605 43.8
ATR0706G038 Amborella trichopoda HOM05D007272 ORTHO05D009305 4.1e-115 419.5 493 47.9
Gohir.A05G363800 Gossypium hirsutum HOM05D007272 ORTHO05D009305 2.2e-113 413.7 483 50.5
Atru.chr8.1898 Acer truncatum HOM05D007272 ORTHO05D009305 1.5e-112 411.0 377 59.7
HPP92_000629 Vanilla planifolia HOM05D007272 ORTHO05D009305 5.2e-110 402.5 500 45.6
Aqoxy3G03290 Aquilegia oxysepala HOM05D007272 ORTHO05D009305 3.4e-109 399.8 397 51.4
PSO832G2300 Papaver somniferum HOM05D007272 ORTHO05D009305 7.0e-107 392.1 436 50.9
COL.COLO4_25162 Corchorus olitorius HOM05D007118 ORTHO05D008957 2.7e-106 390.2 500 46.8
Os01g0185400 Oryza sativa ssp. japonica HOM05D007272 ORTHO05D009305 9.4e-104 381.7 497 44.1
Zm00001eb121640 Zea mays HOM05D007272 ORTHO05D009305 2.3e-102 377.1 501 43.5
Glyma.19G020400 Glycine max HOM05D007272 ORTHO05D009305 4.4e-101 372.9 349 58.2
VMungo0464G0783 Vigna mungo HOM05D007272 ORTHO05D009305 2.2e-100 370.5 414 53.1
MD17G1048100 Malus domestica HOM05D007272 ORTHO05D009305 3.8e-97 359.8 319 59.9
Nitab4.5_0000564g0300 Nicotiana tabacum HOM05D007272 ORTHO05D009305 5.6e-96 355.9 573 40.0
Medtr6g011500 Medicago truncatula HOM05D007272 ORTHO05D009305 1.7e-81 307.8 381 48.3
Pp3c15_23310 Physcomitrium patens HOM05D007272 ORTHO05D009305 1.8e-78 297.7 517 36.9
Mapoly0135s0023 Marchantia polymorpha HOM05D007272 ORTHO05D009305 2.3e-73 280.8 489 38.2
PGSC0003DMG400001312 Solanum tuberosum HOM05D007272 ORTHO05D009305 8.6e-65 252.3 294 49.7
SMO356G0594 Selaginella moellendorffii HOM05D007272 ORTHO05D009305 3.1e-62 243.8 416 36.8
CSS0034889 Camellia sinensis var. sinensis HOM05D007272 ORTHO05D009305 3.5e-58 230.3 223 54.7
CSS0013465 Camellia sinensis var. sinensis HOM05D007272 ORTHO05D009305 9.9e-53 212.2 225 52.4
Duzib147G0842 Durio zibethinus HOM05D007272 ORTHO05D009305 2.1e-34 151.4 182 45.6
CDE04G0606 Ceratophyllum demersum HOM05D007272 ORTHO05D009305 2.1e-31 141.4 205 43.4
AagrBONN_evm.TU.Sc2ySwM_344.2727 Anthoceros agrestis HOM05D007272 ORTHO05D009305 7.2e-27 126.3 177 37.3
VMungo0464G0246 Vigna mungo HOM05D007272 ORTHO05D009305 1.2e-21 109.0 129 45.0
Zm00001eb204740 Zea mays HOM05D007272 ORTHO05D009305 2.2e-20 104.8 242 35.5
FAN19G2836 Fragaria x ananassa HOM05D007272 ORTHO05D045475 6.5e-20 103.2 239 34.7
Hma1.2p1_2982F.1_g331250 Hydrangea macrophylla HOM05D007272 ORTHO05D009305 4.2e-19 100.5 71 67.6
CDE04G1434 Ceratophyllum demersum HOM05D007272 ORTHO05D009305 2.7e-18 97.8 139 40.3
HanXRQChr07g0191831 Helianthus annuus HOM05D007272 ORTHO05D009305 3.9e-17 94.0 72 62.5
Medtr6g011510 Medicago truncatula HOM05D007272 ORTHO05D009305 8.8e-17 92.8 141 39.0
ATR0693G009 Amborella trichopoda HOM05D007272 ORTHO05D009305 1.4e-14 85.5 118 43.2
Hma1.2p1_0449F.1_g155150 Hydrangea macrophylla HOM05D007272 ORTHO05D009305 2.4e-14 84.7 172 37.2
Hma1.2p1_2982F.1_g331245 Hydrangea macrophylla HOM05D007272 ORTHO05D009305 2.4e-14 84.7 172 37.2
FvH4_1g26162 Fragaria vesca HOM05D007272 ORTHO05D045475 1.5e-13 82.0 55 67.3
MELO3C030970.2 Cucumis melo HOM05D007272 ORTHO05D009305 1.3e-12 79.0 77 49.4
Dinv33460 Davidia involucrata HOM05D007272 ORTHO05D010159 1.1e-08 65.9 55 61.8
Medtr8g044020 Medicago truncatula HOM05D007272 ORTHO05D009305 4.4e-08 63.9 62 50.0
SGA_v2.0_scaffold52G19148 Striga asiatica HOM05D007272 ORTHO05D009305 4.4e-08 63.9 126 34.1
Lsat_1_v5_gn_0_39820 Lactuca sativa HOM05D004386 ORTHO05D005247 1.3e-07 62.4 286 23.4
EL10Ac5g10958 Beta vulgaris HOM05D003913 ORTHO05D004803 8.2e-07 59.7 156 28.2
Pp3c9_6000 Physcomitrium patens HOM05D002561 ORTHO05D006466 1.4e-06 58.9 252 26.6


User provided reference genes

Program Settings