Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0168711 Rosa chinensis HOM05D005746 ORTHO05D007105 0.0e+00 4372.8 2194 100.0
FvH4_6g48870 Fragaria vesca HOM05D005746 ORTHO05D007105 0.0e+00 3898.2 2195 90.3
FAN02G0556 Fragaria x ananassa HOM05D005746 ORTHO05D007105 0.0e+00 3867.0 2197 89.3
MD09G1049900 Malus domestica HOM05D005746 ORTHO05D007105 0.0e+00 3432.5 2226 78.4
MD17G1050300 Malus domestica HOM05D005746 ORTHO05D007105 0.0e+00 3429.8 2223 78.5
FAN09G1953 Fragaria x ananassa HOM05D005746 ORTHO05D007105 0.0e+00 3357.8 1879 89.9
Haze_14549 Corylus avellana HOM05D005746 ORTHO05D007105 0.0e+00 3033.4 2212 70.0
Cfa007537 Carpinus fangiana HOM05D005746 ORTHO05D007105 0.0e+00 3021.1 2212 70.0
CiPaw.03G027900 Carya illinoinensis HOM05D005746 ORTHO05D007105 0.0e+00 2981.8 2220 69.4
Dinv33748 Davidia involucrata HOM05D005746 ORTHO05D007105 0.0e+00 2976.0 2231 68.3
QL02p081653 Quercus lobata HOM05D005746 ORTHO05D007105 0.0e+00 2957.9 2226 68.1
Prupe.3G268800 Prunus persica HOM05D005746 ORTHO05D007105 0.0e+00 2942.5 1830 81.5
Atru.chr8.140 Acer truncatum HOM05D005746 ORTHO05D007105 0.0e+00 2939.4 2228 68.0
CSS0043134 Camellia sinensis var. sinensis HOM05D005746 ORTHO05D007105 0.0e+00 2861.2 2236 65.7
Duzib147G0034 Durio zibethinus HOM05D005746 ORTHO05D007105 0.0e+00 2841.6 2228 65.9
TAR374G0083 Trochodendron aralioides HOM05D005746 ORTHO05D007105 0.0e+00 2831.2 2233 65.3
Potri.004G128601 Populus trichocarpa HOM05D005746 ORTHO05D007105 0.0e+00 2804.6 2235 65.3
CSS0009890 Camellia sinensis var. sinensis HOM05D005746 ORTHO05D007105 0.0e+00 2799.6 2236 64.7
Gorai.006G018000 Gossypium raimondii HOM05D005746 ORTHO05D007105 0.0e+00 2797.3 2227 65.2
TWI34G0228 Tripterygium wilfordii HOM05D005746 ORTHO05D007105 0.0e+00 2791.1 2230 65.3
COL.COLO4_33291 Corchorus olitorius HOM05D005746 ORTHO05D007105 0.0e+00 2787.7 2225 65.0
Gohir.A09G017100 Gossypium hirsutum HOM05D005746 ORTHO05D007105 0.0e+00 2782.7 2227 65.0
Actinidia06086 Actinidia chinensis HOM05D005746 ORTHO05D007105 0.0e+00 2773.0 2216 64.6
ClCG10G014980 Citrullus lanatus HOM05D005746 ORTHO05D007105 0.0e+00 2771.5 2219 65.0
Rhsim10G0040100 Rhododendron simsii HOM05D005746 ORTHO05D007105 0.0e+00 2751.1 2249 63.9
MELO3C009878.2 Cucumis melo HOM05D005746 ORTHO05D007105 0.0e+00 2748.4 2224 64.3
Sed0005323 Sechium edule HOM05D005746 ORTHO05D007105 0.0e+00 2721.4 2218 64.0
Sabra04G0090500 Salix brachista HOM05D005746 ORTHO05D007105 0.0e+00 2716.0 2232 63.6
vmacro05704 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2714.1 2233 63.1
vmacro17103 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2703.7 2233 62.9
Nn4g23132 Nelumbo nucifera HOM05D005746 ORTHO05D007105 0.0e+00 2694.1 2211 63.3
arahy.Tifrunner.gnm1.ann1.C4FZ3V Arachis hypogaea HOM05D005746 ORTHO05D007105 0.0e+00 2653.6 2234 62.4
arahy.Tifrunner.gnm1.ann1.IK9RDG Arachis hypogaea HOM05D005746 ORTHO05D007105 0.0e+00 2647.5 2232 62.2
Lj2g0006836 Lotus japonicus HOM05D005746 ORTHO05D007105 0.0e+00 2604.7 2239 61.4
Ciclev10010889m.g Citrus clementina HOM05D005746 ORTHO05D007105 0.0e+00 2600.9 2243 62.1
Eucgr.J01361 Eucalyptus grandis HOM05D005746 ORTHO05D007105 0.0e+00 2597.8 2222 61.4
Sc14g0005950 Simmondsia chinensis HOM05D005746 ORTHO05D007105 0.0e+00 2589.7 2229 60.8
vmacro05746 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2588.5 2233 60.8
Ca_04277_v3 Cicer arietinum L. HOM05D005746 ORTHO05D007105 0.0e+00 2587.4 2234 60.7
THA.LOC104823176 Tarenaya hassleriana HOM05D005746 ORTHO05D007105 0.0e+00 2578.1 2215 61.9
Lalb_Chr06g0175391 Lupinus albus HOM05D005746 ORTHO05D007105 0.0e+00 2571.2 2239 60.9
Cc07_g03290 Coffea canephora HOM05D005746 ORTHO05D007105 0.0e+00 2570.0 2229 60.3
Aqoxy3G00678 Aquilegia oxysepala HOM05D005746 ORTHO05D007105 0.0e+00 2567.3 2230 60.2
TPR.G10375 Trifolium pratense HOM05D005746 ORTHO05D007105 0.0e+00 2567.0 2236 60.5
PSO017G1620 Papaver somniferum HOM05D005746 ORTHO05D007105 0.0e+00 2560.8 2228 59.8
Psat1g074560 Pisum sativum HOM05D005746 ORTHO05D007105 0.0e+00 2556.6 2238 60.5
Hund15611 Selenicereus undatus HOM05D005746 ORTHO05D007105 0.0e+00 2553.9 2221 60.5
Medtr6g011760 Medicago truncatula HOM05D005746 ORTHO05D007105 0.0e+00 2550.0 2228 60.7
Oeu060938.1 Olea europaea HOM05D005746 ORTHO05D007105 0.0e+00 2546.5 2258 59.2
Phvul.004G028000 Phaseolus vulgaris HOM05D005746 ORTHO05D007105 0.0e+00 2545.0 2227 59.9
VMungo0464G0495 Vigna mungo HOM05D005746 ORTHO05D007105 0.0e+00 2540.0 2231 60.2
Nitab4.5_0002923g0020 Nicotiana tabacum HOM05D005746 ORTHO05D007105 0.0e+00 2530.7 2220 59.1
Glyma.19G021700 Glycine max HOM05D005746 ORTHO05D007105 0.0e+00 2529.2 2234 59.9
Peaxi162Scf00451g00821 Petunia axillaris HOM05D005746 ORTHO05D007105 0.0e+00 2522.7 2231 59.3
PGR083G2853 Punica granatum HOM05D005746 ORTHO05D007105 0.0e+00 2516.5 2213 60.0
Solyc03g062650.3 Solanum lycopersicum HOM05D005746 ORTHO05D007105 0.0e+00 2506.5 2217 59.0
MBI05_g35450_MAGBIO Magnolia biondii HOM05D005746 ORTHO05D007105 0.0e+00 2504.9 2254 59.5
CAN.G1205.1 Capsicum annuum HOM05D005746 ORTHO05D007105 0.0e+00 2489.5 2221 58.9
DCAR_021658 Daucus carota HOM05D005746 ORTHO05D007105 0.0e+00 2485.3 2230 58.4
MSTRG.3234 Avicennia marina HOM05D005746 ORTHO05D007105 0.0e+00 2484.5 2228 58.4
Sopen03g014980 Solanum pennellii HOM05D005746 ORTHO05D007105 0.0e+00 2479.1 2217 58.5
Aa31LG2G4330 Aethionema arabicum HOM05D005746 ORTHO05D007105 0.0e+00 2477.6 2247 59.3
EL10Ac2g02971 Beta vulgaris HOM05D005746 ORTHO05D007105 0.0e+00 2467.6 2221 59.7
AT3G55160 Arabidopsis thaliana HOM05D005746 ORTHO05D007105 0.0e+00 2439.8 2216 59.3
Migut.H00912 Erythranthe guttata HOM05D005746 ORTHO05D007105 0.0e+00 2439.8 2238 57.4
AL5G36280 Arabidopsis lyrata HOM05D005746 ORTHO05D007105 0.0e+00 2436.4 2211 59.1
Sp2g17500 Schrenkiella parvula HOM05D005746 ORTHO05D007105 0.0e+00 2431.8 2218 59.5
ECA246G0262 Erigeron canadensis HOM05D005746 ORTHO05D007105 0.0e+00 2425.6 2211 58.3
C07p37790 Brassica napus HOM05D005746 ORTHO05D007105 0.0e+00 2423.3 2208 59.1
BolC7t44300H Brassica oleracea HOM05D005746 ORTHO05D007105 0.0e+00 2423.3 2208 59.1
AUR62034394 Chenopodium quinoa HOM05D005746 ORTHO05D007105 0.0e+00 2422.1 2228 58.5
Thhalv10003503m.g Eutrema salsugineum HOM05D005746 ORTHO05D007105 0.0e+00 2418.7 2216 58.8
AUR62039819 Chenopodium quinoa HOM05D005746 ORTHO05D007105 0.0e+00 2416.3 2220 58.6
CARHR165190 Cardamine hirsuta HOM05D005746 ORTHO05D007105 0.0e+00 2407.9 2216 58.9
A06p40280 Brassica napus HOM05D005746 ORTHO05D007105 0.0e+00 2406.3 2207 58.7
BraA06t26946Z Brassica rapa HOM05D005746 ORTHO05D007105 0.0e+00 2406.3 2207 58.7
Thecc.04G080100 Theobroma cacao HOM05D005746 ORTHO05D007105 0.0e+00 2405.2 1826 67.3
HanXRQChr14g0439111 Helianthus annuus HOM05D005746 ORTHO05D007105 0.0e+00 2399.0 2210 57.7
SGA_v2.0_scaffold1G00328 Striga asiatica HOM05D005746 ORTHO05D007105 0.0e+00 2370.1 2240 56.6
Manes.15G175000 Manihot esculenta HOM05D005746 ORTHO05D007105 0.0e+00 2352.0 1828 66.1
BcaC06g33649 Brassica carinata HOM05D005746 ORTHO05D007105 0.0e+00 2289.6 2208 56.9
vmacro22549 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2277.7 2334 53.9
Lsat_1_v5_gn_3_100801 Lactuca sativa HOM05D005746 ORTHO05D007105 0.0e+00 2271.5 2231 55.7
Carub.0005s2180 Capsella rubella HOM05D005746 ORTHO05D007105 0.0e+00 2267.7 2039 59.9
Gohir.D09G015800 Gossypium hirsutum HOM05D005746 ORTHO05D007105 0.0e+00 2214.9 1709 66.7
ATR0564G261 Amborella trichopoda HOM05D005746 ORTHO05D007105 0.0e+00 2149.8 2309 51.2
Zm00001eb414960 Zea mays HOM05D005746 ORTHO05D007105 0.0e+00 2110.5 2245 52.0
HPP92_011243 Vanilla planifolia HOM05D005746 ORTHO05D007105 0.0e+00 2070.4 2221 52.0
GSVIVG01011388001 Vitis vinifera HOM05D005746 ORTHO05D007105 0.0e+00 2028.8 2198 52.5
Cpa.g.sc14.10 Carica papaya HOM05D005746 ORTHO05D007105 0.0e+00 1831.2 1423 67.7
SEGI_38380 Sequoiadendron giganteum HOM05D005746 ORTHO05D007105 0.0e+00 1793.9 2388 44.4
Os08g0169700 Oryza sativa ssp. japonica HOM05D005746 ORTHO05D007105 0.0e+00 1573.5 1703 51.7
Lju41C18T12 Lonicera japonica HOM05D005746 ORTHO05D007105 0.0e+00 1527.7 1373 59.7
Mapoly0207s0007 Marchantia polymorpha HOM05D005746 ORTHO05D007105 0.0e+00 1464.5 2358 40.0
Pp3c6_28730 Physcomitrium patens HOM05D005746 ORTHO05D007105 0.0e+00 1427.2 2344 38.8
CsaV3_3G041530 Cucumis sativus L. HOM05D005746 ORTHO05D007105 0.0e+00 1343.9 1204 60.3
CsaV3_3G041540 Cucumis sativus L. HOM05D005746 ORTHO05D007105 0.0e+00 1342.0 1013 67.5
unitig_0.g531 Utricularia gibba HOM05D005746 ORTHO05D007105 0.0e+00 1330.1 2169 39.5
VMungo0464G0208 Vigna mungo HOM05D005746 ORTHO05D007105 0.0e+00 1324.3 1114 62.4
SMO367G0809 Selaginella moellendorffii HOM05D005746 ORTHO05D007105 0.0e+00 1309.7 2252 37.4
Duzib147G0404 Durio zibethinus HOM05D005746 ORTHO05D007105 0.0e+00 1197.2 935 65.8
vmacro05484 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 1170.6 1063 57.4
CDE09G0909 Ceratophyllum demersum HOM05D005746 ORTHO05D007105 0.0e+00 1082.0 1433 45.4
Lju41A18T48 Lonicera japonica HOM05D005746 ORTHO05D007105 8.8e-286 988.4 781 66.1
vmacro05485 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 5.7e-269 932.6 1015 52.9
CBR_g50021 Chara braunii HOM05D005746 ORTHO05D007105 5.0e-265 919.5 2444 30.2
BcaNung05131 Brassica carinata HOM05D005746 ORTHO05D007105 3.6e-239 833.6 866 52.7
AagrBONN_evm.TU.Sc2ySwM_369.379 Anthoceros agrestis HOM05D005746 ORTHO05D007105 2.8e-223 780.8 1336 39.1
CDE09G1403 Ceratophyllum demersum HOM05D005746 ORTHO05D007105 4.9e-220 770.0 716 57.3
BcaC06g33650 Brassica carinata HOM05D005746 ORTHO05D007105 3.5e-178 630.9 1007 41.7
Cpa.g.sc14.9 Carica papaya HOM05D005746 ORTHO05D007105 2.3e-153 548.5 460 59.1
MCO11G207 Micromonas commoda HOM05D005746 ORTHO05D007105 4.1e-150 537.7 2470 25.1
Gohir.D09G015833 Gossypium hirsutum HOM05D005746 ORTHO05D007105 6.8e-105 387.5 370 58.4
CAN.G284.10 Capsicum annuum HOM05D005746 ORTHO05D007105 1.9e-78 299.7 324 51.9
CARHR159400 Cardamine hirsuta HOM05D005746 ORTHO05D007105 4.2e-78 298.5 290 59.3
Migut.L00530 Erythranthe guttata HOM05D005746 ORTHO05D007105 3.0e-68 265.8 758 28.5
CAN.G691.2 Capsicum annuum HOM05D005746 ORTHO05D007105 5.1e-68 265.0 303 47.2
CAN.G65.185 Capsicum annuum HOM05D005746 ORTHO05D007105 1.5e-64 253.4 318 47.8
CAN.G525.35 Capsicum annuum HOM05D005746 ORTHO05D007105 2.3e-60 239.6 230 53.0
CAN.G697.12 Capsicum annuum HOM05D005746 ORTHO05D007105 2.1e-53 216.5 230 51.3
CsaV3_UNG114880 Cucumis sativus L. HOM05D005746 ORTHO05D007105 7.9e-53 214.5 178 66.9
CAN.G352.19 Capsicum annuum HOM05D005746 ORTHO05D007105 3.4e-48 199.1 273 44.7
Lj2g0022018 Lotus japonicus HOM05D005746 ORTHO05D007105 5.5e-46 191.8 140 70.0
CAN.G385.2 Capsicum annuum HOM05D005746 ORTHO05D007105 3.2e-38 166.0 219 44.7
VMungo1127G1036 Vigna mungo HOM05D005746 ORTHO05D007105 6.7e-36 158.3 94 83.0
AagrBONN_evm.TU.Sc2ySwM_369.378 Anthoceros agrestis HOM05D005746 ORTHO05D007105 1.8e-33 150.2 474 28.5
Cre15.g642050 Chlamydomonas reinhardtii HOM05D005746 ORTHO05D007105 2.7e-29 136.3 252 35.3
Gohir.A11G290200 Gossypium hirsutum HOM05D005746 ORTHO05D007105 4.7e-29 135.6 103 62.1
CAN.G853.24 Capsicum annuum HOM05D005746 ORTHO05D007105 6.8e-28 131.7 163 48.5
VMungo1127G1975 Vigna mungo HOM05D005746 ORTHO05D007105 9.8e-27 127.9 108 65.7
VMungo0331G1774 Vigna mungo HOM05D005746 ORTHO05D007105 4.1e-25 122.5 97 61.9
AagrBONN_evm.TU.Sc2ySwM_369.374 Anthoceros agrestis HOM05D005746 ORTHO05D007105 1.2e-13 84.3 103 41.7
Cfa022176 Carpinus fangiana HOM05D005746 ORTHO05D125765 3.0e-07 63.2 338 21.3


User provided reference genes

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