Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0168611 Rosa chinensis HOM05D003496 ORTHO05D003909 8.4e-38 159.8 80 100.0
RcHm_v2.0_Chr7g0243631 Rosa chinensis HOM05D003496 ORTHO05D003909 9.7e-26 119.8 69 87.0
FAN08G2234 Fragaria x ananassa HOM05D003496 ORTHO05D003909 6.3e-25 117.1 69 85.5
RcHm_v2.0_Chr7g0239001 Rosa chinensis HOM05D003496 ORTHO05D003909 6.3e-25 117.1 69 84.1
RcHm_v2.0_Chr0c28g0501001 Rosa chinensis HOM05D003496 ORTHO05D003909 8.2e-25 116.7 69 85.5
RcHm_v2.0_Chr0c28g0501031 Rosa chinensis HOM05D003496 ORTHO05D003909 8.2e-25 116.7 69 85.5
RcHm_v2.0_Chr7g0243591 Rosa chinensis HOM05D003496 ORTHO05D003909 8.2e-25 116.7 69 85.5
FAN04G0832 Fragaria x ananassa HOM05D003496 ORTHO05D003909 1.8e-24 115.5 69 84.1
FvH4_6g40021 Fragaria vesca HOM05D003496 ORTHO05D003909 2.4e-24 115.2 69 82.6
FvH4_5g37341 Fragaria vesca HOM05D003496 ORTHO05D003909 5.3e-24 114.0 69 82.6
FAN18G3881 Fragaria x ananassa HOM05D003496 ORTHO05D003909 5.3e-24 114.0 69 82.6
FAN13G0595 Fragaria x ananassa HOM05D003496 ORTHO05D003909 1.2e-23 112.8 69 81.2
RcHm_v2.0_Chr7g0243551 Rosa chinensis HOM05D003496 ORTHO05D003909 7.7e-23 110.2 69 81.2
QL12p036753 Quercus lobata HOM05D003496 ORTHO05D003909 1.0e-14 83.2 71 63.4
Prupe.1G516800 Prunus persica HOM05D003496 ORTHO05D003909 2.9e-14 81.6 71 62.0
Eucgr.F00323 Eucalyptus grandis HOM05D003496 ORTHO05D003909 3.8e-14 81.3 73 64.4
Cfa013633 Carpinus fangiana HOM05D003496 ORTHO05D003909 8.5e-14 80.1 71 62.0
Rhsim06G0082300 Rhododendron simsii HOM05D003496 ORTHO05D003909 1.1e-13 79.7 70 62.9
Thecc.08G107000 Theobroma cacao HOM05D003496 ORTHO05D003909 1.1e-13 79.7 71 62.0
Manes.18G067700 Manihot esculenta HOM05D003496 ORTHO05D003909 1.9e-13 79.0 69 63.8
vmacro21271 Vaccinium macrocarpon HOM05D003496 ORTHO05D003909 1.9e-13 79.0 73 58.9
Gohir.A05G226500 Gossypium hirsutum HOM05D003496 ORTHO05D003909 3.2e-13 78.2 71 60.6
Gohir.D05G229200 Gossypium hirsutum HOM05D003496 ORTHO05D003909 3.2e-13 78.2 71 60.6
Gorai.009G237200 Gossypium raimondii HOM05D003496 ORTHO05D003909 3.2e-13 78.2 71 60.6
Duzib093G0574 Durio zibethinus HOM05D003496 ORTHO05D003909 4.2e-13 77.8 71 59.2
vmacro13001 Vaccinium macrocarpon HOM05D003496 ORTHO05D003909 4.2e-13 77.8 69 62.3
Atru.chr13.1191 Acer truncatum HOM05D003496 ORTHO05D003909 7.2e-13 77.0 71 59.2
Atru.chr13.1193 Acer truncatum HOM05D003496 ORTHO05D003909 7.2e-13 77.0 71 59.2
GSVIVG01009028001 Vitis vinifera HOM05D003496 ORTHO05D003909 7.2e-13 77.0 71 59.2
Actinidia10321 Actinidia chinensis HOM05D003496 ORTHO05D003909 9.4e-13 76.6 70 61.4
Cc10_g07230 Coffea canephora HOM05D003496 ORTHO05D003909 1.2e-12 76.3 70 61.4
THA.LOC104810802 Tarenaya hassleriana HOM05D003496 ORTHO05D003909 1.2e-12 76.3 71 60.6
Actinidia27185 Actinidia chinensis HOM05D003496 ORTHO05D003909 1.6e-12 75.9 70 61.4
Actinidia30770 Actinidia chinensis HOM05D003496 ORTHO05D003909 1.6e-12 75.9 70 61.4
vmacro18796 Vaccinium macrocarpon HOM05D003496 ORTHO05D003909 1.6e-12 75.9 69 60.9
MD15G1368600 Malus domestica HOM05D003496 ORTHO05D003909 2.1e-12 75.5 70 60.0
CiPaw.08G045100 Carya illinoinensis HOM05D003496 ORTHO05D003909 2.7e-12 75.1 70 61.4
Ciclev10000237m.g Citrus clementina HOM05D003496 ORTHO05D003909 3.6e-12 74.7 70 57.1
Sed0000627 Sechium edule HOM05D003496 ORTHO05D003909 3.6e-12 74.7 71 59.2
Glyma.14G173000 Glycine max HOM05D003496 ORTHO05D003909 4.7e-12 74.3 79 53.2
TWI56G0580 Tripterygium wilfordii HOM05D003496 ORTHO05D003909 4.7e-12 74.3 69 60.9
Glyma.13G089100 Glycine max HOM05D003496 ORTHO05D003909 6.1e-12 73.9 69 60.9
Lalb_Chr10g0102381 Lupinus albus HOM05D003496 ORTHO05D003909 6.1e-12 73.9 67 59.7
TAR628G0803 Trochodendron aralioides HOM05D003496 ORTHO05D003909 6.1e-12 73.9 70 57.1
CANSAT25G1637 Cannabis sativa HOM05D003496 ORTHO05D003909 8.0e-12 73.6 71 57.7
Sabra02G0075900 Salix brachista HOM05D003496 ORTHO05D003909 8.0e-12 73.6 76 59.2
FAN18G0240 Fragaria x ananassa HOM05D003496 ORTHO05D003909 1.4e-11 72.8 67 62.7
vmacro18810 Vaccinium macrocarpon HOM05D003496 ORTHO05D003909 1.4e-11 72.8 69 59.4
Cpa.g.sc36.129 Carica papaya HOM05D003496 ORTHO05D003909 5.2e-11 70.9 71 54.9
ClCG11G015270 Citrullus lanatus HOM05D003496 ORTHO05D003909 5.2e-11 70.9 70 58.6
Migut.C01172 Erythranthe guttata HOM05D003496 ORTHO05D003909 5.2e-11 70.9 71 57.7
TWI12G1339 Tripterygium wilfordii HOM05D003496 ORTHO05D003909 5.2e-11 70.9 69 58.0
Aa31LG7G6200 Aethionema arabicum HOM05D003496 ORTHO05D003909 6.7e-11 70.5 68 60.3
MELO3C003452.2 Cucumis melo HOM05D003496 ORTHO05D003909 8.8e-11 70.1 68 60.3
Thhalv10018107m.g Eutrema salsugineum HOM05D003496 ORTHO05D003909 1.1e-10 69.7 72 54.2
Hund16907 Selenicereus undatus HOM05D003496 ORTHO05D003909 1.1e-10 69.7 74 54.1
Hund16910 Selenicereus undatus HOM05D003496 ORTHO05D003909 1.1e-10 69.7 74 54.1
AT1G22260 Arabidopsis thaliana HOM05D003496 ORTHO05D003909 1.5e-10 69.3 81 51.9
DCAR_031330 Daucus carota HOM05D003496 ORTHO05D003909 2.0e-10 68.9 70 52.9
FvH4_5g37878 Fragaria vesca HOM05D003496 ORTHO05D003909 2.0e-10 68.9 45 80.0
PSO832G0815 Papaver somniferum HOM05D003496 ORTHO05D003909 2.6e-10 68.6 66 56.1
CARHR022600 Cardamine hirsuta HOM05D003496 ORTHO05D003909 4.4e-10 67.8 74 52.7
PSO063G1836 Papaver somniferum HOM05D003496 ORTHO05D003909 4.4e-10 67.8 66 56.1
FvH4_5g37650 Fragaria vesca HOM05D000762 ORTHO05D045981 5.7e-10 67.4 39 79.5
FAN18G1978 Fragaria x ananassa HOM05D000762 ORTHO05D045981 5.7e-10 67.4 39 79.5
VMungo0647G2412 Vigna mungo HOM05D003496 ORTHO05D003909 5.7e-10 67.4 72 55.6
arahy.Tifrunner.gnm1.ann1.92N1A9 Arachis hypogaea HOM05D003496 ORTHO05D003909 7.5e-10 67.0 69 55.1
arahy.Tifrunner.gnm1.ann1.ZN2UT8 Arachis hypogaea HOM05D003496 ORTHO05D003909 7.5e-10 67.0 69 55.1
A07p27660 Brassica napus HOM05D003496 ORTHO05D003909 7.5e-10 67.0 70 52.9
HanXRQChr13g0402531 Helianthus annuus HOM05D003496 ORTHO05D003909 7.5e-10 67.0 70 51.4
CSS0008540 Camellia sinensis var. sinensis HOM05D003496 ORTHO05D003909 9.7e-10 66.6 70 52.9
Aqoxy6G00790 Aquilegia oxysepala HOM05D003496 ORTHO05D003909 1.3e-09 66.2 70 52.9
SGA_v2.0_scaffold24G10490 Striga asiatica HOM05D003496 ORTHO05D003909 1.3e-09 66.2 72 51.4
MSTRG.1476 Avicennia marina HOM05D003496 ORTHO05D003909 1.7e-09 65.9 71 47.9
CsaV3_3G048690 Cucumis sativus L. HOM05D003496 ORTHO05D003909 1.7e-09 65.9 62 61.3
TPR.G7904 Trifolium pratense HOM05D003496 ORTHO05D003909 2.2e-09 65.5 69 55.1
Nitab4.5_0000232g0220 Nicotiana tabacum HOM05D003496 ORTHO05D003909 2.8e-09 65.1 68 52.9
Nitab4.5_0005777g0080 Nicotiana tabacum HOM05D003496 ORTHO05D003909 2.8e-09 65.1 68 52.9
Oeu012925.3 Olea europaea HOM05D003496 ORTHO05D003909 2.8e-09 65.1 71 53.5
Phvul.008G173500 Phaseolus vulgaris HOM05D003496 ORTHO05D003909 2.8e-09 65.1 69 56.5
BcaC08g45430 Brassica carinata HOM05D003496 ORTHO05D003909 3.7e-09 64.7 70 50.0
C06p30630 Brassica napus HOM05D003496 ORTHO05D003909 3.7e-09 64.7 70 50.0
BolC6t38227H Brassica oleracea HOM05D003496 ORTHO05D003909 3.7e-09 64.7 70 50.0
FvH4_5g32780 Fragaria vesca HOM05D003496 ORTHO05D003909 3.7e-09 64.7 39 82.1
FAN08G2337 Fragaria x ananassa HOM05D003496 ORTHO05D003909 4.8e-09 64.3 42 73.8
Oeu046297.1 Olea europaea HOM05D003496 ORTHO05D003909 4.8e-09 64.3 73 50.7
Sp5g33310 Schrenkiella parvula HOM05D003496 ORTHO05D003909 4.8e-09 64.3 70 51.4
Lj1g0018735 Lotus japonicus HOM05D003496 ORTHO05D003909 1.4e-08 62.8 68 54.4
Cc02_g10170 Coffea canephora HOM05D003496 ORTHO05D003909 1.8e-08 62.4 61 55.7
Psat2g073040 Pisum sativum HOM05D003496 ORTHO05D003909 1.8e-08 62.4 69 53.6
PGR042G0634 Punica granatum HOM05D003496 ORTHO05D003909 1.8e-08 62.4 66 54.5
Carub.0001s2183 Capsella rubella HOM05D003496 ORTHO05D003909 2.4e-08 62.0 74 48.6
COL.COLO4_16402 Corchorus olitorius HOM05D003496 ORTHO05D003909 5.3e-08 60.8 69 52.2
Peaxi162Scf00041g01739 Petunia axillaris HOM05D003496 ORTHO05D003909 7.0e-08 60.5 67 50.7
Ah.05g169990 Amaranthus hybridus HOM05D003496 ORTHO05D003909 9.1e-08 60.1 75 48.0
BraA07t30407Z Brassica rapa HOM05D003496 ORTHO05D003909 2.0e-07 58.9 70 47.1
CAN.G101.20 Capsicum annuum HOM05D003496 ORTHO05D003909 2.7e-07 58.5 64 56.2
RcHm_v2.0_Chr0c28g0500941 Rosa chinensis HOM05D003496 ORTHO05D003909 3.5e-07 58.2 38 76.3
AUR62027754 Chenopodium quinoa HOM05D003496 ORTHO05D003909 5.9e-07 57.4 61 55.7
AL1G35730 Arabidopsis lyrata HOM05D003496 ORTHO05D003909 1.0e-06 56.6 74 45.9
ECA233G4469 Erigeron canadensis HOM05D003496 ORTHO05D003909 2.9e-06 55.1 69 47.8
unitig_899.g14555 Utricularia gibba HOM05D003496 ORTHO05D003909 3.8e-06 54.7 69 44.9
EL10Ac1g01221 Beta vulgaris HOM05D003496 ORTHO05D003909 6.5e-06 53.9 61 50.8


User provided reference genes

Program Settings