Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0168601 Rosa chinensis HOM05D004140 ORTHO05D006116 7.3e-220 766.9 386 100.0
FvH4_6g48690 Fragaria vesca HOM05D004140 ORTHO05D006116 8.8e-141 504.2 392 70.9
FAN14G0184 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.5e-116 423.7 392 62.8
FAN02G1609 Fragaria x ananassa HOM05D004140 ORTHO05D006116 2.9e-115 419.5 342 68.1
FAN09G1572 Fragaria x ananassa HOM05D004140 ORTHO05D006116 5.4e-106 388.7 499 49.9
FvH4_6g48680 Fragaria vesca HOM05D004140 ORTHO05D045602 1.1e-63 248.1 354 48.3
Prupe.7G109900 Prunus persica HOM05D004140 ORTHO05D006116 1.0e-59 235.0 270 52.6
FAN14G1397 Fragaria x ananassa HOM05D004140 ORTHO05D045602 9.3e-58 228.4 354 45.5
MD12G1036400 Malus domestica HOM05D004140 ORTHO05D006116 1.2e-57 228.0 270 50.0
MD14G1023200 Malus domestica HOM05D004140 ORTHO05D006116 1.2e-57 228.0 273 50.2
RcHm_v2.0_Chr3g0473691 Rosa chinensis HOM05D004140 ORTHO05D006116 1.2e-57 228.0 270 50.4
FvH4_6g18720 Fragaria vesca HOM05D004140 ORTHO05D006116 3.5e-57 226.5 270 50.4
FAN05G3313 Fragaria x ananassa HOM05D004140 ORTHO05D006116 3.5e-57 226.5 270 50.4
FAN14G5862 Fragaria x ananassa HOM05D004140 ORTHO05D006116 3.5e-57 226.5 270 50.4
FAN02G3405 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.0e-56 224.9 270 50.0
Ca_19610_v3 Cicer arietinum L. HOM05D004140 ORTHO05D006116 7.4e-55 218.8 264 47.7
Glyma.11G176309 Glycine max HOM05D004140 ORTHO05D006116 7.4e-55 218.8 265 47.2
Glyma.01G077300 Glycine max HOM05D004140 ORTHO05D006116 9.7e-55 218.4 265 47.2
FAN05G2644 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.3e-54 218.0 281 48.4
Nitab4.5_0008893g0010 Nicotiana tabacum HOM05D004140 ORTHO05D006116 2.8e-54 216.9 267 47.2
Medtr7g030010 Medicago truncatula HOM05D004140 ORTHO05D006116 3.7e-54 216.5 267 47.6
Medtr7g038740 Medicago truncatula HOM05D004140 ORTHO05D006116 3.7e-54 216.5 267 47.6
Rhsim07G0139000 Rhododendron simsii HOM05D004140 ORTHO05D006116 3.7e-54 216.5 254 48.8
Sc02g0000260 Simmondsia chinensis HOM05D004140 ORTHO05D006116 4.8e-54 216.1 270 47.8
TPR.G39122 Trifolium pratense HOM05D004140 ORTHO05D006116 8.2e-54 215.3 269 47.6
GSVIVG01033846001 Vitis vinifera HOM05D004140 ORTHO05D006116 8.2e-54 215.3 267 48.3
VMungo1383G3240 Vigna mungo HOM05D004140 ORTHO05D006116 2.4e-53 213.8 247 47.8
Manes.08G025400 Manihot esculenta HOM05D004140 ORTHO05D006116 3.1e-53 213.4 266 48.1
Nitab4.5_0000071g0150 Nicotiana tabacum HOM05D004140 ORTHO05D006116 5.3e-53 212.6 267 46.1
Carub.0006s0285 Capsella rubella HOM05D004140 ORTHO05D006116 6.9e-53 212.2 265 46.4
CDE06G1324 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 6.9e-53 212.2 275 47.3
CDE08G0731 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 6.9e-53 212.2 270 46.3
QL07p038742 Quercus lobata HOM05D004140 ORTHO05D006116 6.9e-53 212.2 267 48.7
QL07p038993 Quercus lobata HOM05D004140 ORTHO05D006116 6.9e-53 212.2 267 48.7
TWI77G1027 Tripterygium wilfordii HOM05D004140 ORTHO05D006116 6.9e-53 212.2 267 46.1
AT5G03900 Arabidopsis thaliana HOM05D004140 ORTHO05D006116 9.0e-53 211.8 265 46.0
CiPaw.09G014200 Carya illinoinensis HOM05D004140 ORTHO05D006116 1.5e-52 211.1 266 47.0
Lalb_Chr07g0194001 Lupinus albus HOM05D004140 ORTHO05D006116 1.5e-52 211.1 246 48.0
AL6G13480 Arabidopsis lyrata HOM05D004140 ORTHO05D006116 2.0e-52 210.7 265 46.0
TAR633G1381 Trochodendron aralioides HOM05D004140 ORTHO05D006116 2.6e-52 210.3 249 47.8
Actinidia18162 Actinidia chinensis HOM05D004140 ORTHO05D006116 3.4e-52 209.9 305 43.3
CANSAT80G0330 Cannabis sativa HOM05D004140 ORTHO05D006116 3.4e-52 209.9 267 47.6
Thecc.05G089300 Theobroma cacao HOM05D004140 ORTHO05D006116 3.4e-52 209.9 252 47.2
Actinidia14741 Actinidia chinensis HOM05D004140 ORTHO05D006116 4.5e-52 209.5 305 43.3
CAN.G1407.2 Capsicum annuum HOM05D004140 ORTHO05D006116 4.5e-52 209.5 267 45.3
Gohir.D04G099900 Gossypium hirsutum HOM05D004140 ORTHO05D006116 5.9e-52 209.1 252 47.2
Nn6g34895 Nelumbo nucifera HOM05D004140 ORTHO05D006116 7.7e-52 208.8 249 47.4
Phvul.008G154100 Phaseolus vulgaris HOM05D004140 ORTHO05D006116 7.7e-52 208.8 247 47.8
PGR142G4281 Punica granatum HOM05D004140 ORTHO05D006116 7.7e-52 208.8 249 47.8
Thhalv10013253m.g Eutrema salsugineum HOM05D004140 ORTHO05D006116 1.3e-51 208.0 265 45.7
Gorai.009G402800 Gossypium raimondii HOM05D004140 ORTHO05D006116 1.3e-51 208.0 252 46.8
RcHm_v2.0_Chr3g0473761 Rosa chinensis HOM05D004140 ORTHO05D006116 1.3e-51 208.0 263 49.0
Migut.J01040 Erythranthe guttata HOM05D004140 ORTHO05D006116 1.7e-51 207.6 281 44.8
COL.COLO4_29732 Corchorus olitorius HOM05D004140 ORTHO05D006116 2.2e-51 207.2 270 44.4
Sabra04G0060700 Salix brachista HOM05D004140 ORTHO05D006116 2.2e-51 207.2 249 47.4
ATR0776G070 Amborella trichopoda HOM05D004140 ORTHO05D006116 2.9e-51 206.8 252 46.0
Gohir.A04G062800 Gossypium hirsutum HOM05D004140 ORTHO05D006116 3.8e-51 206.5 252 46.8
CARHR209360 Cardamine hirsuta HOM05D004140 ORTHO05D006116 6.5e-51 205.7 265 45.3
Lj1g0011596 Lotus japonicus HOM05D004140 ORTHO05D006116 6.5e-51 205.7 248 47.6
Aqoxy2G01189 Aquilegia oxysepala HOM05D004140 ORTHO05D006116 8.5e-51 205.3 268 47.0
BolC9t60037H Brassica oleracea HOM05D004140 ORTHO05D006116 8.5e-51 205.3 247 46.2
Sopen04g018570 Solanum pennellii HOM05D004140 ORTHO05D006116 8.5e-51 205.3 267 44.2
Atru.chr8.1534 Acer truncatum HOM05D004140 ORTHO05D006116 1.1e-50 204.9 250 46.8
BcaC06g32093 Brassica carinata HOM05D004140 ORTHO05D006116 1.1e-50 204.9 247 46.2
Potri.004G090400 Populus trichocarpa HOM05D004140 ORTHO05D006116 1.1e-50 204.9 249 47.0
Sp6g38830 Schrenkiella parvula HOM05D004140 ORTHO05D006116 1.1e-50 204.9 265 44.9
Eucgr.K02037 Eucalyptus grandis HOM05D004140 ORTHO05D006116 1.4e-50 204.5 267 45.3
CsaV3_3G037290 Cucumis sativus L. HOM05D004140 ORTHO05D006116 1.9e-50 204.1 267 46.8
SGA_v2.0_scaffold13G06716 Striga asiatica HOM05D004140 ORTHO05D006116 1.9e-50 204.1 267 46.4
EL10Ac7g16915 Beta vulgaris HOM05D004140 ORTHO05D006116 3.2e-50 203.4 249 45.0
A10p32220 Brassica napus HOM05D004140 ORTHO05D006116 3.2e-50 203.4 247 45.7
BraA10t45265Z Brassica rapa HOM05D004140 ORTHO05D006116 3.2e-50 203.4 247 45.7
MELO3C009474.2 Cucumis melo HOM05D004140 ORTHO05D006116 3.2e-50 203.4 249 47.8
Hma1.2p1_0084F.1_g043830 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 3.2e-50 203.4 265 45.7
Sed0020948 Sechium edule HOM05D004140 ORTHO05D006116 3.2e-50 203.4 267 46.8
THA.LOC104823220 Tarenaya hassleriana HOM05D004140 ORTHO05D006116 5.5e-50 202.6 265 43.8
BolC2t06125H Brassica oleracea HOM05D004140 ORTHO05D006116 7.2e-50 202.2 265 43.8
C02p01600 Brassica napus HOM05D004140 ORTHO05D006116 1.2e-49 201.4 265 43.8
arahy.Tifrunner.gnm1.ann1.0JB8QE Arachis hypogaea HOM05D004140 ORTHO05D006116 1.6e-49 201.1 295 41.7
HanXRQChr05g0163581 Helianthus annuus HOM05D004140 ORTHO05D006116 1.6e-49 201.1 267 45.3
SalBow3G3032 Salvia bowleyana HOM05D004140 ORTHO05D006116 1.6e-49 201.1 267 46.4
Ah.15g090870 Amaranthus hybridus HOM05D004140 ORTHO05D006116 2.1e-49 200.7 250 46.0
BraA02t04791Z Brassica rapa HOM05D004140 ORTHO05D006116 3.6e-49 199.9 265 44.2
Cc06_g05780 Coffea canephora HOM05D004140 ORTHO05D006116 3.6e-49 199.9 246 45.9
Haze_19613 Corylus avellana HOM05D004140 ORTHO05D006116 4.6e-49 199.5 236 51.3
Ciclev10013333m.g Citrus clementina HOM05D004140 ORTHO05D006116 6.1e-49 199.1 267 43.8
Lsat_1_v5_gn_5_164821 Lactuca sativa HOM05D004140 ORTHO05D006116 6.1e-49 199.1 247 46.6
arahy.Tifrunner.gnm1.ann1.IX7NGG Arachis hypogaea HOM05D004140 ORTHO05D006116 7.9e-49 198.7 295 41.4
Aa31LG1G21380 Aethionema arabicum HOM05D004140 ORTHO05D006116 1.0e-48 198.4 247 44.1
Zm00001eb242770 Zea mays HOM05D004140 ORTHO05D006116 1.0e-48 198.4 249 45.8
unitig_578.g16025 Utricularia gibba HOM05D004140 ORTHO05D006116 1.4e-48 198.0 252 43.3
ECA248G2777 Erigeron canadensis HOM05D004140 ORTHO05D000452 2.3e-48 197.2 267 44.6
Dinv31688 Davidia involucrata HOM05D004140 ORTHO05D006116 3.0e-48 196.8 236 47.0
DCAR_020746 Daucus carota HOM05D004140 ORTHO05D006116 3.9e-48 196.4 279 43.0
Os02g0533000 Oryza sativa ssp. japonica HOM05D004140 ORTHO05D006116 3.9e-48 196.4 251 45.4
C09p73020 Brassica napus HOM05D004140 ORTHO05D006116 1.9e-47 194.1 263 43.3
BcaB05g21796 Brassica carinata HOM05D004140 ORTHO05D006116 4.3e-47 193.0 263 43.3
Lj2A137T30 Lonicera japonica HOM05D004140 ORTHO05D006116 5.7e-47 192.6 270 43.0
Migut.J01039 Erythranthe guttata HOM05D004140 ORTHO05D006116 7.4e-47 192.2 249 45.8
PSO384G3764 Papaver somniferum HOM05D004140 ORTHO05D006116 7.4e-47 192.2 250 47.2
PSO339G4989 Papaver somniferum HOM05D004140 ORTHO05D006116 1.7e-46 191.0 250 47.2
AUR62006183 Chenopodium quinoa HOM05D004140 ORTHO05D006116 2.8e-46 190.3 290 40.3
ClCG10G018960 Citrullus lanatus HOM05D004140 ORTHO05D006116 6.3e-46 189.1 260 45.0
AUR62028518 Chenopodium quinoa HOM05D004140 ORTHO05D006116 3.1e-45 186.8 267 42.3
HanXRQChr01g0001931 Helianthus annuus HOM05D004140 ORTHO05D006116 3.1e-45 186.8 277 40.4
HPP92_005468 Vanilla planifolia HOM05D004140 ORTHO05D006116 3.4e-44 183.3 244 44.3
HanXRQChr01g0001941 Helianthus annuus HOM05D004140 ORTHO05D006116 2.9e-43 180.3 295 39.0
Peaxi162Scf01227g00030 Petunia axillaris HOM05D004140 ORTHO05D006116 1.8e-40 171.0 249 41.8
CBR_g12587 Chara braunii HOM05D004140 ORTHO05D006116 3.0e-40 170.2 254 41.3
Mapoly0014s0147 Marchantia polymorpha HOM05D004140 ORTHO05D006116 3.0e-40 170.2 254 40.9
Pp3c24_800 Physcomitrium patens HOM05D004140 ORTHO05D006116 3.0e-40 170.2 273 41.8
vmacro14235 Vaccinium macrocarpon HOM05D004140 ORTHO05D006116 3.0e-40 170.2 193 47.7
Cfa016609 Carpinus fangiana HOM05D004140 ORTHO05D006116 8.8e-40 168.7 184 51.6
Hund19931 Selenicereus undatus HOM05D004140 ORTHO05D006116 8.8e-40 168.7 221 47.1
Duzib093G1424 Durio zibethinus HOM05D004140 ORTHO05D006116 2.6e-39 167.2 249 41.8
FvH4_6g18750 Fragaria vesca HOM05D004140 ORTHO05D006116 4.8e-38 162.9 242 43.4
AagrBONN_evm.TU.Sc2ySwM_117.4009 Anthoceros agrestis HOM05D004140 ORTHO05D006116 9.1e-37 158.7 249 38.6
Solyc04g049130.4 Solanum lycopersicum HOM05D004140 ORTHO05D006116 7.7e-36 155.6 157 50.3
SMO137G0276 Selaginella moellendorffii HOM05D004140 ORTHO05D006116 8.5e-35 152.1 245 39.6
DCAR_013387 Daucus carota HOM05D004140 ORTHO05D006116 3.2e-34 150.2 157 48.4
CSS0000051 Camellia sinensis var. sinensis HOM05D004140 ORTHO05D006116 6.1e-33 146.0 154 50.6
DCAR_007754 Daucus carota HOM05D004140 ORTHO05D006116 6.1e-33 146.0 156 47.4
PRCOL_00000272 Prasinoderma coloniale HOM05D004140 ORTHO05D006116 5.2e-32 142.9 278 35.3
Hma1.2p1_0820F.1_g223840 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 3.3e-31 140.2 227 40.5
Psat3g173280 Pisum sativum HOM05D004140 ORTHO05D006116 2.2e-30 137.5 206 40.3
Cre07.g338350 Chlamydomonas reinhardtii HOM05D004140 ORTHO05D006116 1.9e-26 124.4 255 36.1
FvH4_6g48650 Fragaria vesca HOM05D004140 ORTHO05D197702 6.1e-25 119.4 231 37.2
FvH4_6g48651 Fragaria vesca HOM05D004140 ORTHO05D045442 3.0e-24 117.1 225 38.2
MCO08G276 Micromonas commoda HOM05D004140 ORTHO05D006116 5.2e-24 116.3 279 30.5
Nitab4.5_0004212g0030 Nicotiana tabacum HOM05D004140 ORTHO05D006116 8.8e-24 115.5 141 44.7
FAN09G0971 Fragaria x ananassa HOM05D004140 ORTHO05D045442 3.3e-23 113.6 230 37.0
Cpa.g.sc5.17 Carica papaya HOM05D004140 ORTHO05D006116 7.5e-23 112.5 129 47.3
RcHm_v2.0_Chr3g0473721 Rosa chinensis HOM05D004140 ORTHO05D006116 9.1e-21 105.5 85 61.2
BcaC03g12977 Brassica carinata HOM05D004140 ORTHO05D006116 4.0e-16 90.1 145 40.7
FAN05G2486 Fragaria x ananassa HOM05D025039 ORTHO05D035284 4.4e-15 86.7 198 34.8
FvH4_6g48661 Fragaria vesca HOM05D025039 ORTHO05D197361 1.4e-13 81.6 166 38.0
RcHm_v2.0_Chr3g0473711 Rosa chinensis HOM05D004140 ORTHO05D006116 1.8e-13 81.3 108 44.4
MCO05G565 Micromonas commoda HOM05D004140 ORTHO05D269347 2.0e-12 77.8 148 29.7
Lj2A1003T9 Lonicera japonica HOM05D004140 ORTHO05D006116 3.5e-12 77.0 176 35.2
FAN05G4745 Fragaria x ananassa HOM05D000532 ORTHO05D002414 1.0e-11 75.5 210 30.5
FvH4_6g48660 Fragaria vesca HOM05D025039 ORTHO05D035284 6.6e-11 72.8 138 37.7
FAN09G2843 Fragaria x ananassa HOM05D025039 ORTHO05D035284 1.5e-10 71.6 138 37.0
SEGI_03177 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 1.5e-07 61.6 104 36.5
PGSC0003DMG400019058 Solanum tuberosum HOM05D004140 ORTHO05D006116 4.4e-07 60.1 101 38.6
SEGI_11477 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 9.8e-07 58.9 57 50.9
Cpa.g.sc5.18 Carica papaya HOM05D004140 ORTHO05D006116 2.8e-06 57.4 79 50.6


User provided reference genes

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