Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0168421 Rosa chinensis HOM05D000113 ORTHO05D048871 6.3e-38 160.2 78 100.0
RcHm_v2.0_Chr7g0220171 Rosa chinensis HOM05D000113 ORTHO05D006161 1.1e-21 106.3 76 65.8
Prupe.1G193500 Prunus persica HOM05D000113 ORTHO05D006161 2.5e-18 95.1 77 59.7
ClCG09G005490 Citrullus lanatus HOM05D000113 ORTHO05D006161 5.2e-16 87.4 77 51.9
FvH4_3g40090 Fragaria vesca HOM05D000113 ORTHO05D006161 5.2e-16 87.4 77 57.1
FAN11G2310 Fragaria x ananassa HOM05D000113 ORTHO05D006161 5.2e-16 87.4 77 57.1
FAN16G3510 Fragaria x ananassa HOM05D000113 ORTHO05D006161 5.2e-16 87.4 77 57.1
FAN21G3024 Fragaria x ananassa HOM05D000113 ORTHO05D006161 5.2e-16 87.4 77 57.1
MELO3C015960.2 Cucumis melo HOM05D000113 ORTHO05D006161 6.8e-16 87.0 77 53.2
CsaV3_7G029610 Cucumis sativus L. HOM05D000113 ORTHO05D006161 8.9e-16 86.7 77 53.2
RcHm_v2.0_Chr4g0407811 Rosa chinensis HOM05D000113 ORTHO05D006161 1.2e-15 86.3 77 55.8
MD04G1241500 Malus domestica HOM05D000113 ORTHO05D006161 2.6e-15 85.1 78 60.3
Cpa.g.sc151.33 Carica papaya HOM05D000113 ORTHO05D006161 4.4e-15 84.3 77 51.9
CiPaw.07G112500 Carya illinoinensis HOM05D000113 ORTHO05D006161 4.4e-15 84.3 77 54.5
Sed0026170 Sechium edule HOM05D000113 ORTHO05D006161 4.4e-15 84.3 74 54.1
Glyma.01G142700 Glycine max HOM05D000113 ORTHO05D006161 1.3e-14 82.8 77 49.4
Phvul.010G084200 Phaseolus vulgaris HOM05D000113 ORTHO05D006161 1.3e-14 82.8 77 48.1
arahy.Tifrunner.gnm1.ann1.M111ST Arachis hypogaea HOM05D000113 ORTHO05D006161 1.7e-14 82.4 76 50.0
arahy.Tifrunner.gnm1.ann1.SIBB7F Arachis hypogaea HOM05D000113 ORTHO05D006161 2.2e-14 82.0 76 48.7
Glyma.03G024000 Glycine max HOM05D000113 ORTHO05D006161 2.2e-14 82.0 77 48.1
Lalb_Chr10g0099391 Lupinus albus HOM05D000113 ORTHO05D006161 2.2e-14 82.0 77 48.1
QL12p027746 Quercus lobata HOM05D000113 ORTHO05D006161 3.7e-14 81.3 77 54.5
Cfa005867 Carpinus fangiana HOM05D000113 ORTHO05D006161 6.3e-14 80.5 77 53.2
Cc08_g12990 Coffea canephora HOM05D000113 ORTHO05D006161 6.3e-14 80.5 79 49.4
Nn5g26851 Nelumbo nucifera HOM05D000113 ORTHO05D006161 6.3e-14 80.5 73 53.4
VMungo0331G1928 Vigna mungo HOM05D001793 ORTHO05D006161 6.3e-14 80.5 77 49.4
Haze_04980 Corylus avellana HOM05D001493 ORTHO05D006161 8.3e-14 80.1 77 53.2
TWI59G0818 Tripterygium wilfordii HOM05D000113 ORTHO05D006161 8.3e-14 80.1 77 50.6
Medtr4g120070 Medicago truncatula HOM05D000113 ORTHO05D006161 1.1e-13 79.7 76 48.7
Rhsim01G0287700 Rhododendron simsii HOM05D000113 ORTHO05D006161 1.1e-13 79.7 79 53.2
DCAR_012372 Daucus carota HOM05D000113 ORTHO05D006161 1.4e-13 79.3 79 53.2
TPR.G9858 Trifolium pratense HOM05D000113 ORTHO05D006161 1.4e-13 79.3 76 50.0
Actinidia25823 Actinidia chinensis HOM05D000113 ORTHO05D006161 1.8e-13 79.0 79 50.6
Ca_15122_v3 Cicer arietinum L. HOM05D000113 ORTHO05D006161 1.8e-13 79.0 76 48.7
Lj2g0016628 Lotus japonicus HOM05D000113 ORTHO05D006161 1.8e-13 79.0 76 47.4
Hma1.2p1_0098F.1_g048470 Hydrangea macrophylla HOM05D000113 ORTHO05D006161 2.4e-13 78.6 81 50.6
Lj4g0011992 Lotus japonicus HOM05D000113 ORTHO05D006161 2.4e-13 78.6 76 46.1
MSTRG.21654 Avicennia marina HOM05D000113 ORTHO05D006161 3.2e-13 78.2 79 50.6
Peaxi162Scf00150g00139 Petunia axillaris HOM05D000113 ORTHO05D006161 3.2e-13 78.2 79 48.1
Lj5A370T56 Lonicera japonica HOM05D000113 ORTHO05D006161 4.1e-13 77.8 79 51.9
Oeu008340.1 Olea europaea HOM05D000113 ORTHO05D006161 4.1e-13 77.8 79 49.4
Psat7g233480 Pisum sativum HOM05D000113 ORTHO05D006161 4.1e-13 77.8 76 48.7
EL10Ac6g14998 Beta vulgaris HOM05D000113 ORTHO05D006161 5.4e-13 77.4 78 48.7
Medtr4g023590 Medicago truncatula HOM05D000113 ORTHO05D006161 5.4e-13 77.4 76 47.4
TAR633G2709 Trochodendron aralioides HOM05D000113 ORTHO05D006161 5.4e-13 77.4 79 49.4
GSVIVG01028054001 Vitis vinifera HOM05D000113 ORTHO05D006161 5.4e-13 77.4 79 50.6
Thecc.10G083300 Theobroma cacao HOM05D000113 ORTHO05D006161 9.2e-13 76.6 77 48.1
Manes.01G223000 Manihot esculenta HOM05D000113 ORTHO05D006161 1.2e-12 76.3 77 51.9
MBI04_g31155_MAGBIO Magnolia biondii HOM05D000113 ORTHO05D006161 1.6e-12 75.9 79 50.6
Prupe.1G445700 Prunus persica HOM05D000113 ORTHO05D006161 1.6e-12 75.9 78 52.6
vmacro04631 Vaccinium macrocarpon HOM05D000113 ORTHO05D006161 1.6e-12 75.9 76 50.0
SHI19097 Sapria himalayana HOM05D000113 ORTHO05D006161 2.7e-12 75.1 74 50.0
Thecc.01G306300 Theobroma cacao HOM05D000113 ORTHO05D006161 2.7e-12 75.1 77 46.8
Atru.chr5.1086 Acer truncatum HOM05D000113 ORTHO05D006161 3.5e-12 74.7 74 50.0
Lj2C1199T13 Lonicera japonica HOM05D000113 ORTHO05D006161 3.5e-12 74.7 70 52.9
PGSC0003DMG401000100 Solanum tuberosum HOM05D000113 ORTHO05D006161 3.5e-12 74.7 79 45.6
SGA_v2.0_scaffold334G49027 Striga asiatica HOM05D000113 ORTHO05D006161 3.5e-12 74.7 79 48.1
TAR362G0332 Trochodendron aralioides HOM05D000113 ORTHO05D006161 3.5e-12 74.7 79 48.1
Ciclev10018519m.g Citrus clementina HOM05D000113 ORTHO05D006161 4.6e-12 74.3 77 46.8
Duzib138G1872 Durio zibethinus HOM05D000113 ORTHO05D006161 4.6e-12 74.3 77 48.1
Hund05453 Selenicereus undatus HOM05D000113 ORTHO05D006161 4.6e-12 74.3 79 50.6
CANSAT80G0530 Cannabis sativa HOM05D000113 ORTHO05D006161 7.8e-12 73.6 80 48.8
Sc15g0001890 Simmondsia chinensis HOM05D000113 ORTHO05D006161 7.8e-12 73.6 79 48.1
AUR62008717 Chenopodium quinoa HOM05D000113 ORTHO05D006161 1.0e-11 73.2 77 48.1
Eucgr.E04059 Eucalyptus grandis HOM05D000113 ORTHO05D006161 1.0e-11 73.2 77 46.8
Solyc01g095710.3 Solanum lycopersicum HOM05D000113 ORTHO05D006161 1.0e-11 73.2 79 45.6
CSS0016737 Camellia sinensis var. sinensis HOM05D000113 ORTHO05D006161 5.0e-11 70.9 79 48.1
CDE07G1855 Ceratophyllum demersum HOM05D000113 ORTHO05D006161 6.6e-11 70.5 72 50.0
PSO675G6280 Papaver somniferum HOM05D000113 ORTHO05D006161 6.6e-11 70.5 79 45.6
Sopen01g039450 Solanum pennellii HOM05D000113 ORTHO05D006161 6.6e-11 70.5 79 44.3
Sc26g0003690 Simmondsia chinensis HOM05D000113 ORTHO05D006161 1.5e-10 69.3 79 45.6
A02p35320 Brassica napus HOM05D000113 ORTHO05D006161 1.9e-10 68.9 75 45.3
AUR62025517 Chenopodium quinoa HOM05D000113 ORTHO05D006161 2.5e-10 68.6 77 45.5
Hma1.2p1_0212F.1_g090260 Hydrangea macrophylla HOM05D000113 ORTHO05D006161 2.5e-10 68.6 79 45.6
Aqoxy2G02870 Aquilegia oxysepala HOM05D000113 ORTHO05D006161 4.3e-10 67.8 75 52.0
Gorai.001G141100 Gossypium raimondii HOM05D000113 ORTHO05D006161 5.6e-10 67.4 77 41.6
HanXRQChr04g0105431 Helianthus annuus HOM05D000113 ORTHO05D006161 7.3e-10 67.0 77 45.5
C02p54060 Brassica napus HOM05D000113 ORTHO05D006161 9.5e-10 66.6 75 44.0
BolC2t11468H Brassica oleracea HOM05D000113 ORTHO05D006161 9.5e-10 66.6 75 44.0
THA.LOC104802184 Tarenaya hassleriana HOM05D000113 ORTHO05D006161 9.5e-10 66.6 75 41.3
ATR0307G121 Amborella trichopoda HOM05D000113 ORTHO05D006161 1.2e-09 66.2 79 43.0
Carub.0001s3158 Capsella rubella HOM05D000113 ORTHO05D006161 2.1e-09 65.5 75 42.7
Gohir.D07G130400 Gossypium hirsutum HOM05D000113 ORTHO05D006161 3.6e-09 64.7 77 40.3
Rhsim09G0109600 Rhododendron simsii HOM05D000113 ORTHO05D006161 3.6e-09 64.7 78 42.3
Migut.D00126 Erythranthe guttata HOM05D000113 ORTHO05D006161 1.4e-08 62.8 80 42.5
PSO339G3312 Papaver somniferum HOM05D000113 ORTHO05D006161 2.3e-08 62.0 79 43.0
SalBow6G1114 Salvia bowleyana HOM05D000113 ORTHO05D006161 4.0e-08 61.2 61 52.5
Medtr3g070440 Medicago truncatula HOM05D000113 ORTHO05D048871 5.2e-08 60.8 66 50.0
Os02g0736600 Oryza sativa ssp. japonica HOM05D000113 ORTHO05D006161 1.2e-07 59.7 79 43.0
Gohir.A07G126300 Gossypium hirsutum HOM05D000113 ORTHO05D006161 1.5e-07 59.3 77 39.0
FAN05G0532 Fragaria x ananassa HOM05D016056 ORTHO05D014811 2.6e-07 58.5 69 44.9
TPR.G23919 Trifolium pratense HOM05D000113 ORTHO05D006161 3.4e-07 58.2 46 54.3
Lsat_1_v5_gn_3_139220 Lactuca sativa HOM05D000113 ORTHO05D006161 9.8e-07 56.6 74 40.5
Pp3c3_18630 Physcomitrium patens HOM05D000113 ORTHO05D006161 9.8e-07 56.6 79 34.2
PGR044G2751 Punica granatum HOM05D000113 ORTHO05D006161 9.8e-07 56.6 77 40.3
Zm00001eb253900 Zea mays HOM05D000113 ORTHO05D006161 9.8e-07 56.6 79 40.5
RcHm_v2.0_Chr4g0386401 Rosa chinensis HOM05D000113 ORTHO05D006161 1.7e-06 55.8 65 49.2
EL10Ac4g10264 Beta vulgaris HOM05D000113 ORTHO05D006161 3.7e-06 54.7 73 39.7
EL10Ac4g10280 Beta vulgaris HOM05D000113 ORTHO05D006161 3.7e-06 54.7 73 39.7
Dinv42093 Davidia involucrata HOM05D000113 ORTHO05D006161 4.9e-06 54.3 59 50.8
EL10Ac4g07792 Beta vulgaris HOM05D000113 ORTHO05D006161 6.4e-06 53.9 71 40.8
FAN02G4173 Fragaria x ananassa HOM05D016056 ORTHO05D014811 8.3e-06 53.5 69 43.5


User provided reference genes

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