Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0167931 Rosa chinensis HOM05D004005 ORTHO05D004876 1.3e-128 463.0 227 100.0
RcHm_v2.0_Chr4g0405201 Rosa chinensis HOM05D004005 ORTHO05D004876 1.1e-109 400.2 211 93.8
FvH4_4g08720 Fragaria vesca HOM05D004005 ORTHO05D004876 1.6e-97 359.8 198 87.4
FAN12G2564 Fragaria x ananassa HOM05D004005 ORTHO05D004876 1.6e-97 359.8 198 87.4
FAN12G2633 Fragaria x ananassa HOM05D004005 ORTHO05D004876 1.6e-97 359.8 198 87.4
FAN22G1768 Fragaria x ananassa HOM05D004005 ORTHO05D004876 2.1e-97 359.4 197 87.3
FAN17G1822 Fragaria x ananassa HOM05D004005 ORTHO05D004876 1.5e-95 353.2 198 85.9
MD16G1260700 Malus domestica HOM05D004005 ORTHO05D004876 3.3e-87 325.5 211 77.3
FAN12G2076 Fragaria x ananassa HOM05D004005 ORTHO05D004876 4.8e-86 321.6 228 72.4
Prupe.1G100000 Prunus persica HOM05D004005 ORTHO05D004876 9.9e-84 313.9 214 75.7
Dinv41324 Davidia involucrata HOM05D004005 ORTHO05D004876 6.0e-81 304.7 197 75.1
MD13G1275200 Malus domestica HOM05D004005 ORTHO05D004876 1.0e-80 303.9 277 60.3
Rhsim03G0260700 Rhododendron simsii HOM05D004005 ORTHO05D004876 3.3e-79 298.9 197 74.1
Rhsim03G0261200 Rhododendron simsii HOM05D004005 ORTHO05D004876 3.3e-79 298.9 197 74.1
Potri.018G100900 Populus trichocarpa HOM05D004005 ORTHO05D004876 5.6e-79 298.1 188 76.6
Actinidia33309 Actinidia chinensis HOM05D004005 ORTHO05D004876 9.6e-79 297.4 197 75.1
Actinidia38657 Actinidia chinensis HOM05D004005 ORTHO05D004876 2.8e-78 295.8 197 74.6
TWI34G0830 Tripterygium wilfordii HOM05D004005 ORTHO05D004876 2.8e-78 295.8 191 75.9
Hma1.2p1_0028F.1_g017890 Hydrangea macrophylla HOM05D004005 ORTHO05D004876 1.4e-77 293.5 197 72.6
CSS0032478 Camellia sinensis var. sinensis HOM05D004005 ORTHO05D004876 2.4e-77 292.7 210 70.0
Haze_21258 Corylus avellana HOM05D004005 ORTHO05D004876 2.4e-77 292.7 197 74.6
ClCG06G012740 Citrullus lanatus HOM05D004005 ORTHO05D004876 9.0e-77 290.8 181 79.6
TWI63G1233 Tripterygium wilfordii HOM05D004005 ORTHO05D004876 9.0e-77 290.8 190 74.7
Lj9A725G34 Lonicera japonica HOM05D004005 ORTHO05D004876 1.5e-76 290.0 191 73.3
Cc09_g08370 Coffea canephora HOM05D004005 ORTHO05D004876 2.0e-76 289.7 195 72.8
MELO3C010189.2 Cucumis melo HOM05D004005 ORTHO05D004876 2.0e-76 289.7 181 79.0
Sed0005377 Sechium edule HOM05D004005 ORTHO05D004876 2.0e-76 289.7 179 78.8
Sc14g0001030 Simmondsia chinensis HOM05D004005 ORTHO05D004876 2.6e-76 289.3 184 75.0
QL02p094609 Quercus lobata HOM05D004005 ORTHO05D004876 3.4e-76 288.9 197 73.1
Manes.14G150200 Manihot esculenta HOM05D004005 ORTHO05D004876 5.8e-76 288.1 169 81.1
CiPaw.08G000800 Carya illinoinensis HOM05D004005 ORTHO05D004876 1.3e-75 287.0 197 72.6
Migut.K00290 Erythranthe guttata HOM05D004005 ORTHO05D004876 2.9e-75 285.8 188 72.9
vmacro06047 Vaccinium macrocarpon HOM05D004005 ORTHO05D004876 2.9e-75 285.8 199 72.4
CsaV3_1G029280 Cucumis sativus L. HOM05D004005 ORTHO05D004876 8.4e-75 284.3 168 81.5
PGR102G1327 Punica granatum HOM05D004005 ORTHO05D004876 1.1e-74 283.9 181 77.3
Sabra18G0086900 Salix brachista HOM05D004005 ORTHO05D004876 1.9e-74 283.1 188 74.5
Eucgr.C01238 Eucalyptus grandis HOM05D004005 ORTHO05D004876 3.2e-74 282.3 169 81.7
SGA_v2.0_scaffold233G43567 Striga asiatica HOM05D004005 ORTHO05D004876 5.5e-74 281.6 188 71.8
Peaxi162Scf00038g00320 Petunia axillaris HOM05D004005 ORTHO05D004876 1.6e-73 280.0 191 72.8
MSTRG.26250 Avicennia marina HOM05D004005 ORTHO05D004876 2.1e-73 279.6 175 76.0
Oeu024901.3 Olea europaea HOM05D004005 ORTHO05D004876 2.1e-73 279.6 199 68.3
Atru.chr7.422 Acer truncatum HOM05D004005 ORTHO05D004876 6.0e-73 278.1 199 69.8
Cc06_g14320 Coffea canephora HOM05D004005 ORTHO05D004876 7.9e-73 277.7 175 76.6
Nitab4.5_0002545g0030 Nicotiana tabacum HOM05D004005 ORTHO05D004876 7.9e-73 277.7 196 69.4
Migut.J01404 Erythranthe guttata HOM05D004005 ORTHO05D004876 1.0e-72 277.3 186 71.0
Hma1.2p1_0325F.1_g126020 Hydrangea macrophylla HOM05D004005 ORTHO05D004876 1.0e-72 277.3 202 69.3
Nitab4.5_0003269g0020 Nicotiana tabacum HOM05D004005 ORTHO05D004876 1.3e-72 276.9 196 69.4
Ciclev10008098m.g Citrus clementina HOM05D004005 ORTHO05D004876 1.8e-72 276.6 200 69.5
AUR62039768 Chenopodium quinoa HOM05D004005 ORTHO05D004876 2.3e-72 276.2 206 67.0
Solyc07g006160.3 Solanum lycopersicum HOM05D004005 ORTHO05D004876 2.3e-72 276.2 196 69.9
CSS0035914 Camellia sinensis var. sinensis HOM05D004005 ORTHO05D004876 3.9e-72 275.4 188 71.8
COL.COLO4_10070 Corchorus olitorius HOM05D004005 ORTHO05D004876 3.9e-72 275.4 198 70.2
Duzib150G0934 Durio zibethinus HOM05D004005 ORTHO05D004876 3.9e-72 275.4 201 69.7
Thecc.09G157600 Theobroma cacao HOM05D004005 ORTHO05D004876 3.9e-72 275.4 198 69.7
TAR636G3166 Trochodendron aralioides HOM05D004005 ORTHO05D004876 3.9e-72 275.4 169 79.3
ECA240G0337 Erigeron canadensis HOM05D004005 ORTHO05D004876 6.7e-72 274.6 178 72.5
Gorai.004G105600 Gossypium raimondii HOM05D004005 ORTHO05D004876 8.7e-72 274.2 189 72.5
Sopen07g002270 Solanum pennellii HOM05D004005 ORTHO05D004876 8.7e-72 274.2 196 69.4
PGSC0003DMG400011163 Solanum tuberosum HOM05D004005 ORTHO05D004876 8.7e-72 274.2 196 69.4
Duzib168G0635 Durio zibethinus HOM05D004005 ORTHO05D004876 1.1e-71 273.9 197 69.0
CAN.G1190.5 Capsicum annuum HOM05D004005 ORTHO05D004876 1.5e-71 273.5 196 68.9
Cpa.g.sc199.4 Carica papaya HOM05D004005 ORTHO05D004876 3.3e-71 272.3 202 68.8
CSS0024178 Camellia sinensis var. sinensis HOM05D004005 ORTHO05D004876 4.3e-71 271.9 188 70.7
unitig_0.g2693 Utricularia gibba HOM05D004005 ORTHO05D004876 4.3e-71 271.9 189 70.4
Gohir.D08G098200 Gossypium hirsutum HOM05D004005 ORTHO05D004876 1.3e-70 270.4 189 72.0
Oeu045108.2 Olea europaea HOM05D004005 ORTHO05D004876 6.2e-70 268.1 191 69.6
Duzib187G0310 Durio zibethinus HOM05D004005 ORTHO05D004876 1.1e-69 267.3 198 68.7
Gohir.A08G092600 Gossypium hirsutum HOM05D004005 ORTHO05D004876 1.1e-69 267.3 189 70.9
GSVIVG01023713001 Vitis vinifera HOM05D004005 ORTHO05D004876 1.4e-69 266.9 186 72.0
ECA234G2728 Erigeron canadensis HOM05D004005 ORTHO05D004876 3.1e-69 265.8 174 73.0
DCAR_017932 Daucus carota HOM05D004005 ORTHO05D004876 6.9e-69 264.6 172 76.2
THA.LOC104817817 Tarenaya hassleriana HOM05D004005 ORTHO05D004876 3.4e-68 262.3 191 68.6
EL10Ac8g18886 Beta vulgaris HOM05D004005 ORTHO05D004876 4.5e-68 261.9 197 66.5
HanXRQChr10g0307841 Helianthus annuus HOM05D004005 ORTHO05D004876 4.5e-68 261.9 174 74.1
Medtr4g129950 Medicago truncatula HOM05D004005 ORTHO05D004876 2.2e-67 259.6 191 69.1
HanXRQChr03g0065981 Helianthus annuus HOM05D004005 ORTHO05D004876 8.4e-67 257.7 192 65.6
MBI14_g16417_MAGBIO Magnolia biondii HOM05D004005 ORTHO05D004876 8.4e-67 257.7 171 74.3
Aqoxy5G00992 Aquilegia oxysepala HOM05D004005 ORTHO05D004876 1.4e-66 256.9 219 63.5
Lsat_1_v5_gn_7_51181 Lactuca sativa HOM05D004005 ORTHO05D004876 1.9e-66 256.5 175 70.9
PSO782G3855 Papaver somniferum HOM05D004005 ORTHO05D004876 3.2e-66 255.8 198 66.2
Lalb_Chr12g0198871 Lupinus albus HOM05D004005 ORTHO05D004876 4.2e-66 255.4 196 64.8
Glyma.02G207800 Glycine max HOM05D004005 ORTHO05D004876 7.1e-66 254.6 189 68.3
VMungo1215G0146 Vigna mungo HOM05D004005 ORTHO05D004876 7.1e-66 254.6 169 74.0
Phvul.003G152600 Phaseolus vulgaris HOM05D004005 ORTHO05D004876 9.3e-66 254.2 169 74.0
Glyma.17G069900 Glycine max HOM05D004005 ORTHO05D004876 1.6e-65 253.4 189 68.3
PSO063G3364 Papaver somniferum HOM05D004005 ORTHO05D004876 1.6e-65 253.4 198 65.7
arahy.Tifrunner.gnm1.ann1.GLFY1J Arachis hypogaea HOM05D004005 ORTHO05D004876 2.7e-65 252.7 199 65.8
Zm00001eb076820 Zea mays HOM05D004005 ORTHO05D004876 2.7e-65 252.7 198 61.6
Thhalv10025004m.g Eutrema salsugineum HOM05D004005 ORTHO05D004876 3.5e-65 252.3 185 67.0
Psat0s3878g0040 Pisum sativum HOM05D004005 ORTHO05D004876 3.5e-65 252.3 168 73.8
Ca_21161_v3 Cicer arietinum L. HOM05D004005 ORTHO05D004876 4.6e-65 251.9 169 71.6
arahy.Tifrunner.gnm1.ann1.GWW68B Arachis hypogaea HOM05D004005 ORTHO05D004876 1.0e-64 250.8 199 65.3
AT4G30490 Arabidopsis thaliana HOM05D004005 ORTHO05D004876 1.8e-64 250.0 176 69.9
CARHR238380 Cardamine hirsuta HOM05D004005 ORTHO05D004876 1.8e-64 250.0 185 65.9
Lj4g0005184 Lotus japonicus HOM05D004005 ORTHO05D004876 3.0e-64 249.2 201 64.2
THA.LOC104819957 Tarenaya hassleriana HOM05D004005 ORTHO05D004876 3.0e-64 249.2 203 61.1
TPR.G24854 Trifolium pratense HOM05D004005 ORTHO05D004876 3.0e-64 249.2 169 72.2
BcaNung00559 Brassica carinata HOM05D004005 ORTHO05D004876 5.1e-64 248.4 190 65.3
Zm00001eb426980 Zea mays HOM05D004005 ORTHO05D004876 5.1e-64 248.4 186 62.9
DCAR_020096 Daucus carota HOM05D004005 ORTHO05D004876 1.5e-63 246.9 175 68.6
Sp7g28370 Schrenkiella parvula HOM05D004005 ORTHO05D004876 1.9e-63 246.5 185 65.4
AL7G21650 Arabidopsis lyrata HOM05D004005 ORTHO05D004876 2.5e-63 246.1 176 68.8
HPP92_000253 Vanilla planifolia HOM05D004005 ORTHO05D004876 5.7e-63 245.0 167 70.7
AT4G28070 Arabidopsis thaliana HOM05D004005 ORTHO05D004876 7.4e-63 244.6 158 74.1
Carub.0007s1010 Capsella rubella HOM05D004005 ORTHO05D004876 7.4e-63 244.6 176 68.2
BcaNung01599 Brassica carinata HOM05D004005 ORTHO05D004876 9.7e-63 244.2 205 60.5
C07p57960 Brassica napus HOM05D004005 ORTHO05D004876 1.6e-62 243.4 194 62.9
Aa31LG2G20040 Aethionema arabicum HOM05D004005 ORTHO05D004876 2.2e-62 243.0 178 66.3
Thhalv10025101m.g Eutrema salsugineum HOM05D004005 ORTHO05D004876 2.2e-62 243.0 190 63.7
SalBow6G1392 Salvia bowleyana HOM05D004005 ORTHO05D004876 2.8e-62 242.7 200 61.0
AL7G24540 Arabidopsis lyrata HOM05D004005 ORTHO05D004876 3.7e-62 242.3 158 73.4
Lsat_1_v5_gn_5_88220 Lactuca sativa HOM05D004005 ORTHO05D004876 3.7e-62 242.3 169 69.2
BraA03t15047Z Brassica rapa HOM05D004005 ORTHO05D004876 4.8e-62 241.9 180 67.2
A03p59900 Brassica napus HOM05D004005 ORTHO05D004876 8.2e-62 241.1 180 66.7
BolC7t46254H Brassica oleracea HOM05D004005 ORTHO05D004876 1.1e-61 240.7 195 63.1
A01p19450 Brassica napus HOM05D004005 ORTHO05D004876 1.4e-61 240.4 158 72.8
C01p24500 Brassica napus HOM05D004005 ORTHO05D004876 1.4e-61 240.4 158 72.8
BolC1t02399H Brassica oleracea HOM05D004005 ORTHO05D004876 1.4e-61 240.4 158 72.8
BraA01t01885Z Brassica rapa HOM05D004005 ORTHO05D004876 1.4e-61 240.4 158 72.8
Carub.0007s1271 Capsella rubella HOM05D004005 ORTHO05D004876 2.4e-61 239.6 167 69.5
ATR0580G234 Amborella trichopoda HOM05D004005 ORTHO05D004876 6.9e-61 238.0 155 74.2
CSS0018523 Camellia sinensis var. sinensis HOM05D004005 ORTHO05D004876 6.9e-61 238.0 195 64.6
Lalb_Chr13g0300621 Lupinus albus HOM05D004005 ORTHO05D004876 2.0e-60 236.5 196 61.2
BcaC09g50514 Brassica carinata HOM05D004005 ORTHO05D004876 3.4e-60 235.7 187 63.1
Sp7g26020 Schrenkiella parvula HOM05D004005 ORTHO05D004876 5.0e-59 231.9 157 70.7
Peaxi162Scf00038g00327 Petunia axillaris HOM05D004005 ORTHO05D004876 5.3e-53 211.8 165 66.1
CSS0050478 Camellia sinensis var. sinensis HOM05D004005 ORTHO05D004876 3.8e-51 205.7 127 79.5
SEGI_21312 Sequoiadendron giganteum HOM05D004005 ORTHO05D004876 1.1e-50 204.1 177 61.0
CSS0007371 Camellia sinensis var. sinensis HOM05D004005 ORTHO05D004876 1.4e-50 203.8 158 67.1
CDE02G0320 Ceratophyllum demersum HOM05D004005 ORTHO05D004876 4.7e-49 198.7 135 70.4
CDE04G0214 Ceratophyllum demersum HOM05D004005 ORTHO05D004876 5.1e-48 195.3 165 60.0
RcHm_v2.0_Chr6g0273951 Rosa chinensis HOM05D004005 ORTHO05D004876 2.0e-44 183.3 87 96.6
Pp3c22_9370 Physcomitrium patens HOM05D004005 ORTHO05D004876 5.5e-42 175.3 159 55.3
CSS0036046 Camellia sinensis var. sinensis HOM05D004005 ORTHO05D004876 1.2e-41 174.1 169 55.0
Pp3c18_12420 Physcomitrium patens HOM05D004005 ORTHO05D004876 2.1e-41 173.3 173 50.3
Mapoly0020s0008 Marchantia polymorpha HOM05D004005 ORTHO05D004876 1.4e-40 170.6 171 53.2
CARHR235770 Cardamine hirsuta HOM05D004005 ORTHO05D004876 2.0e-39 166.8 107 72.0
Os08g0265500 Oryza sativa ssp. japonica HOM05D004005 ORTHO05D004876 9.1e-37 157.9 146 54.8
TAR383G0968 Trochodendron aralioides HOM05D004005 ORTHO05D004876 3.6e-33 146.0 132 61.4
AUR62028391 Chenopodium quinoa HOM05D004005 ORTHO05D004876 1.4e-24 117.5 155 44.5
CBR_g49493 Chara braunii HOM05D004005 ORTHO05D004876 3.0e-24 116.3 243 32.1
Pp3c5_25460 Physcomitrium patens HOM05D004005 ORTHO05D004876 2.7e-20 103.2 178 36.5
Pp3c5_25630 Physcomitrium patens HOM05D004005 ORTHO05D004876 2.7e-20 103.2 178 36.5
MCO07G156 Micromonas commoda HOM05D004005 ORTHO05D004876 3.5e-20 102.8 150 39.3
SMO145G0222 Selaginella moellendorffii HOM05D004005 ORTHO05D004876 7.2e-18 95.1 62 66.1
Cfa022368 Carpinus fangiana HOM05D004005 ORTHO05D004876 9.5e-18 94.7 167 40.1
Cre14.g619350 Chlamydomonas reinhardtii HOM05D004005 ORTHO05D004876 6.1e-17 92.0 200 33.5
Cc00_g13400 Coffea canephora HOM05D004005 ORTHO05D004876 6.8e-16 88.6 84 52.4
PRCOL_00006651 Prasinoderma coloniale HOM05D004005 ORTHO05D004876 4.9e-14 82.4 83 53.0
SMO347G0370 Selaginella moellendorffii HOM05D004005 ORTHO05D004876 9.2e-13 78.2 155 35.5
AagrBONN_evm.TU.Sc2ySwM_117.2796 Anthoceros agrestis HOM05D004005 ORTHO05D004876 2.0e-12 77.0 77 49.4
Pp3c3_17820 Physcomitrium patens HOM05D004005 ORTHO05D004876 2.7e-12 76.6 153 34.0
AagrBONN_evm.TU.Sc2ySwM_228.900 Anthoceros agrestis HOM05D004005 ORTHO05D004876 1.7e-11 73.9 178 34.8
QL07p006097 Quercus lobata HOM05D003701 ORTHO05D030296 3.9e-11 72.8 42 83.3
MCO09G433 Micromonas commoda HOM05D004005 ORTHO05D004876 9.5e-10 68.2 159 34.0
Mapoly0034s0040 Marchantia polymorpha HOM05D004005 ORTHO05D004876 4.0e-08 62.8 156 29.5
ATR0322G019 Amborella trichopoda HOM05D006429 ORTHO05D008173 5.8e-07 58.9 50 52.0
SGA_v2.0_scaffold163G37988 Striga asiatica HOM05D006429 ORTHO05D008173 5.8e-07 58.9 60 46.7
EL10Ac2g02614 Beta vulgaris HOM05D006429 ORTHO05D008173 7.5e-07 58.5 80 42.5
HanXRQChr04g0098141 Helianthus annuus HOM05D004005 ORTHO05D021354 1.3e-06 57.8 32 75.0
MSTRG.1719 Avicennia marina HOM05D006429 ORTHO05D008173 1.7e-06 57.4 68 41.2
Ah.12g064110 Amaranthus hybridus HOM05D006429 ORTHO05D008173 2.2e-06 57.0 61 47.5
AT2G25530 Arabidopsis thaliana HOM05D006429 ORTHO05D008173 2.2e-06 57.0 94 37.2
Migut.E01793 Erythranthe guttata HOM05D006429 ORTHO05D008173 2.2e-06 57.0 49 49.0
Mapoly0085s0040 Marchantia polymorpha HOM05D006429 ORTHO05D008173 2.2e-06 57.0 117 35.0
Rhsim07G0157100 Rhododendron simsii HOM05D006429 ORTHO05D008173 2.2e-06 57.0 68 44.1
Psat6g029600 Pisum sativum HOM05D006429 ORTHO05D008173 2.9e-06 56.6 104 34.6
Sabra06G0197200 Salix brachista HOM05D006429 ORTHO05D008173 3.7e-06 56.2 52 48.1
Hund04535 Selenicereus undatus HOM05D006429 ORTHO05D008173 3.7e-06 56.2 49 51.0
Dinv30158 Davidia involucrata HOM05D006429 ORTHO05D008173 4.9e-06 55.8 49 51.0
Dinv42799 Davidia involucrata HOM05D004005 ORTHO05D004876 4.9e-06 55.8 29 82.8
Dinv43302 Davidia involucrata HOM05D004005 ORTHO05D004876 4.9e-06 55.8 29 82.8
Nn8g39429 Nelumbo nucifera HOM05D006429 ORTHO05D008173 4.9e-06 55.8 49 51.0
TAR383G0006 Trochodendron aralioides HOM05D004005 ORTHO05D004876 4.9e-06 55.8 29 82.8
TAR626G0443 Trochodendron aralioides HOM05D006429 ORTHO05D008173 4.9e-06 55.8 49 51.0
VMungo0647G0488 Vigna mungo HOM05D006429 ORTHO05D008173 4.9e-06 55.8 90 37.8
Actinidia15677 Actinidia chinensis HOM05D006429 ORTHO05D008173 8.3e-06 55.1 49 51.0
Aqoxy7G02159 Aquilegia oxysepala HOM05D006429 ORTHO05D008173 8.3e-06 55.1 68 42.6
Manes.03G016200 Manihot esculenta HOM05D006429 ORTHO05D008173 8.3e-06 55.1 49 51.0


User provided reference genes

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