Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0167871 Rosa chinensis HOM05D003147 ORTHO05D003245 7.9e-62 240.4 128 100.0
RcHm_v2.0_Chr2g0132081 Rosa chinensis HOM05D003147 ORTHO05D003245 3.7e-43 178.3 106 89.6
FvH4_6g28100 Fragaria vesca HOM05D003147 ORTHO05D003245 1.8e-37 159.5 107 82.2
FAN14G5560 Fragaria x ananassa HOM05D003147 ORTHO05D003245 1.8e-37 159.5 107 82.2
FAN02G0631 Fragaria x ananassa HOM05D003147 ORTHO05D003245 3.0e-37 158.7 107 81.3
MD17G1228200 Malus domestica HOM05D003147 ORTHO05D003245 2.9e-32 142.1 106 67.0
Haze_16699 Corylus avellana HOM05D003147 ORTHO05D003245 3.6e-30 135.2 83 73.5
CiPaw.01G257000 Carya illinoinensis HOM05D003147 ORTHO05D003245 2.8e-27 125.6 81 71.6
Duzib192G0115 Durio zibethinus HOM05D003147 ORTHO05D003245 1.4e-26 123.2 92 62.0
Cc02_g21780 Coffea canephora HOM05D003147 ORTHO05D003245 3.1e-26 122.1 68 80.9
CSS0045214 Camellia sinensis var. sinensis HOM05D003147 ORTHO05D003245 2.0e-25 119.4 77 70.1
QL09p042296 Quercus lobata HOM05D003147 ORTHO05D003245 2.0e-25 119.4 81 70.4
QL09p042313 Quercus lobata HOM05D003147 ORTHO05D003245 2.0e-25 119.4 81 70.4
SGA_v2.0_scaffold332G48950 Striga asiatica HOM05D003147 ORTHO05D003245 2.0e-25 119.4 71 74.6
Nitab4.5_0003434g0100 Nicotiana tabacum HOM05D003147 ORTHO05D003245 3.5e-25 118.6 72 76.4
Aqoxy7G03290 Aquilegia oxysepala HOM05D003147 ORTHO05D003245 4.5e-25 118.2 74 70.3
Hma1.2p1_0217F.1_g091780 Hydrangea macrophylla HOM05D003147 ORTHO05D003245 4.5e-25 118.2 71 77.5
Rhsim05G0109400 Rhododendron simsii HOM05D003147 ORTHO05D003245 4.5e-25 118.2 72 72.2
vmacro19920 Vaccinium macrocarpon HOM05D003147 ORTHO05D003245 5.9e-25 117.9 91 60.4
PGR031G2120 Punica granatum HOM05D003147 ORTHO05D003245 1.3e-24 116.7 72 75.0
CAN.G523.91 Capsicum annuum HOM05D003147 ORTHO05D003245 1.7e-24 116.3 71 76.1
Eucgr.J03135 Eucalyptus grandis HOM05D003147 ORTHO05D003245 1.7e-24 116.3 69 76.8
Lj9A319T61 Lonicera japonica HOM05D003147 ORTHO05D003245 3.8e-24 115.2 71 74.6
Nitab4.5_0002865g0130 Nicotiana tabacum HOM05D003147 ORTHO05D003245 3.8e-24 115.2 72 73.6
PGSC0003DMG400012593 Solanum tuberosum HOM05D003147 ORTHO05D003245 5.0e-24 114.8 74 71.6
GSVIVG01016089001 Vitis vinifera HOM05D003147 ORTHO05D003245 8.5e-24 114.0 76 67.1
Dinv24211 Davidia involucrata HOM05D003147 ORTHO05D003245 1.5e-23 113.2 72 69.4
Lsat_1_v5_gn_7_81160 Lactuca sativa HOM05D003147 ORTHO05D003245 1.9e-23 112.8 78 64.1
BcaC07g37812 Brassica carinata HOM05D003147 ORTHO05D003245 2.5e-23 112.5 72 68.1
BolC8t48201H Brassica oleracea HOM05D003147 ORTHO05D003245 2.5e-23 112.5 72 68.1
CARHR030000 Cardamine hirsuta HOM05D003147 ORTHO05D003245 2.5e-23 112.5 79 62.0
Gohir.A10G000650 Gossypium hirsutum HOM05D003147 ORTHO05D003245 2.5e-23 112.5 77 64.9
A08p11090 Brassica napus HOM05D003147 ORTHO05D003245 3.2e-23 112.1 72 68.1
BraA08t33103Z Brassica rapa HOM05D003147 ORTHO05D003245 3.2e-23 112.1 72 68.1
Carub.0001s2881 Capsella rubella HOM05D003147 ORTHO05D003245 3.2e-23 112.1 70 68.6
Solyc01g104990.4 Solanum lycopersicum HOM05D003147 ORTHO05D003245 3.2e-23 112.1 76 68.4
Sopen01g047510 Solanum pennellii HOM05D003147 ORTHO05D003245 3.2e-23 112.1 76 68.4
ATR0580G161 Amborella trichopoda HOM05D003147 ORTHO05D003245 4.2e-23 111.7 82 63.4
Thhalv10008708m.g Eutrema salsugineum HOM05D003147 ORTHO05D003245 4.2e-23 111.7 72 65.3
AT1G30550 Arabidopsis thaliana HOM05D003147 ORTHO05D003245 5.5e-23 111.3 72 65.3
A07p09850 Brassica napus HOM05D003147 ORTHO05D003245 7.2e-23 110.9 96 55.2
BraA07t28773Z Brassica rapa HOM05D003147 ORTHO05D003245 7.2e-23 110.9 96 55.2
Migut.B00630 Erythranthe guttata HOM05D003147 ORTHO05D003245 7.2e-23 110.9 76 68.4
BcaB04g18211 Brassica carinata HOM05D003147 ORTHO05D003245 9.4e-23 110.5 73 68.5
Actinidia28066 Actinidia chinensis HOM05D003147 ORTHO05D003245 1.6e-22 109.8 95 54.7
MBI14_g16434_MAGBIO Magnolia biondii HOM05D003147 ORTHO05D003245 2.1e-22 109.4 75 65.3
Nn8g40126 Nelumbo nucifera HOM05D003147 ORTHO05D003245 2.1e-22 109.4 69 71.0
ECA236G4984 Erigeron canadensis HOM05D003147 ORTHO05D003245 3.6e-22 108.6 69 65.2
HanXRQChr11g0336881 Helianthus annuus HOM05D003147 ORTHO05D003245 3.6e-22 108.6 69 68.1
A07p09860 Brassica napus HOM05D003147 ORTHO05D003245 4.7e-22 108.2 96 54.2
A07p09870 Brassica napus HOM05D003147 ORTHO05D003245 4.7e-22 108.2 96 54.2
A07p09880 Brassica napus HOM05D003147 ORTHO05D003245 4.7e-22 108.2 96 54.2
BraA07t28775Z Brassica rapa HOM05D003147 ORTHO05D003245 4.7e-22 108.2 96 54.2
CARHR029960 Cardamine hirsuta HOM05D003147 ORTHO05D003245 4.7e-22 108.2 68 67.6
C07p15070 Brassica napus HOM05D003147 ORTHO05D003245 6.1e-22 107.8 81 60.5
C07p15090 Brassica napus HOM05D003147 ORTHO05D003245 6.1e-22 107.8 81 60.5
BolC7t42012H Brassica oleracea HOM05D003147 ORTHO05D003245 6.1e-22 107.8 81 60.5
DCAR_001797 Daucus carota HOM05D003147 ORTHO05D003245 8.0e-22 107.5 70 68.6
BcaB03g13824 Brassica carinata HOM05D003147 ORTHO05D003245 1.0e-21 107.1 76 61.8
AL1G44590 Arabidopsis lyrata HOM05D003147 ORTHO05D003245 1.4e-21 106.7 72 68.1
BolC7t42013H Brassica oleracea HOM05D003147 ORTHO05D003245 1.8e-21 106.3 81 59.3
A07p09890 Brassica napus HOM05D003147 ORTHO05D003245 2.3e-21 105.9 96 54.2
A07p09900 Brassica napus HOM05D003147 ORTHO05D003245 2.3e-21 105.9 96 53.1
Aa31LG6G11790 Aethionema arabicum HOM05D003147 ORTHO05D003245 4.0e-21 105.1 65 70.8
ATR0693G267 Amborella trichopoda HOM05D003147 ORTHO05D003245 6.7e-21 104.4 89 56.2
Peaxi162Scf00001g00315 Petunia axillaris HOM05D003147 ORTHO05D003245 8.8e-21 104.0 72 69.4
AT1G45231 Arabidopsis thaliana HOM05D003147 ORTHO05D003245 2.0e-20 102.8 104 53.8
Hma1.2p1_0718F.1_g208280 Hydrangea macrophylla HOM05D003147 ORTHO05D003245 2.0e-20 102.8 87 56.3
PSO063G1229 Papaver somniferum HOM05D003147 ORTHO05D003245 2.0e-20 102.8 72 62.5
Rhsim06G0050900 Rhododendron simsii HOM05D003147 ORTHO05D003245 2.0e-20 102.8 69 68.1
Lalb_Chr14g0368631 Lupinus albus HOM05D003147 ORTHO05D003245 4.4e-20 101.7 76 61.8
MBI06_g02569_MAGBIO Magnolia biondii HOM05D003147 ORTHO05D003245 4.4e-20 101.7 87 57.5
Thhalv10022632m.g Eutrema salsugineum HOM05D003147 ORTHO05D003245 9.7e-20 100.5 74 68.9
Carub.0001s3565 Capsella rubella HOM05D003147 ORTHO05D003245 1.7e-19 99.8 70 67.1
AL1G52900 Arabidopsis lyrata HOM05D003147 ORTHO05D003245 2.2e-19 99.4 104 52.9
Lsat_1_v5_gn_4_126480 Lactuca sativa HOM05D003147 ORTHO05D003245 2.2e-19 99.4 71 60.6
Thecc.06G048500 Theobroma cacao HOM05D003147 ORTHO05D003245 2.2e-19 99.4 69 59.4
Dinv35950 Davidia involucrata HOM05D002191 ORTHO05D002292 3.7e-19 98.6 66 66.7
Phvul.001G022600 Phaseolus vulgaris HOM05D003147 ORTHO05D003245 3.7e-19 98.6 87 52.9
Manes.18G038100 Manihot esculenta HOM05D003147 ORTHO05D003245 4.8e-19 98.2 94 50.0
Medtr1g019290 Medicago truncatula HOM05D003147 ORTHO05D003245 6.3e-19 97.8 69 63.8
Sp1g34080 Schrenkiella parvula HOM05D003147 ORTHO05D003245 6.3e-19 97.8 70 64.3
VMungo0647G1146 Vigna mungo HOM05D002191 ORTHO05D002292 6.3e-19 97.8 87 52.9
A10p06940 Brassica napus HOM05D003147 ORTHO05D003245 8.2e-19 97.4 67 68.7
BraA10t42944Z Brassica rapa HOM05D003147 ORTHO05D003245 8.2e-19 97.4 67 68.7
Hma1.2p1_0360F.1_g135570 Hydrangea macrophylla HOM05D003147 ORTHO05D003245 8.2e-19 97.4 73 60.3
Peaxi162Scf01073g00028 Petunia axillaris HOM05D003147 ORTHO05D003245 8.2e-19 97.4 83 56.6
TPR.G3810 Trifolium pratense HOM05D003147 ORTHO05D003245 8.2e-19 97.4 69 63.8
Aa31LG3G17380 Aethionema arabicum HOM05D003147 ORTHO05D003245 1.1e-18 97.1 69 65.2
Aa31sc108G110 Aethionema arabicum HOM05D003147 ORTHO05D003245 1.1e-18 97.1 69 65.2
BcaB07g33872 Brassica carinata HOM05D003147 ORTHO05D003245 1.1e-18 97.1 67 68.7
DCAR_019447 Daucus carota HOM05D003147 ORTHO05D003245 1.1e-18 97.1 69 63.8
RcHm_v2.0_Chr6g0308051 Rosa chinensis HOM05D003147 ORTHO05D003245 1.1e-18 97.1 83 55.4
CARHR036360 Cardamine hirsuta HOM05D003147 ORTHO05D003245 1.4e-18 96.7 76 60.5
Lj5g0008284 Lotus japonicus HOM05D003147 ORTHO05D003245 1.4e-18 96.7 73 58.9
Lalb_Chr22g0355081 Lupinus albus HOM05D003147 ORTHO05D003245 1.4e-18 96.7 96 51.0
Actinidia22637 Actinidia chinensis HOM05D003147 ORTHO05D003245 1.8e-18 96.3 69 60.9
ECA232G3719 Erigeron canadensis HOM05D002191 ORTHO05D002292 2.4e-18 95.9 70 60.0
Glyma.14G083400 Glycine max HOM05D003147 ORTHO05D003245 2.4e-18 95.9 87 55.2
Pp3c22_18570 Physcomitrium patens HOM05D003147 ORTHO05D003245 2.4e-18 95.9 69 62.3
Migut.C00571 Erythranthe guttata HOM05D003147 ORTHO05D003245 3.1e-18 95.5 82 56.1
FvH4_2g34310 Fragaria vesca HOM05D003147 ORTHO05D003245 3.1e-18 95.5 83 56.6
HanXRQChr09g0267541 Helianthus annuus HOM05D003147 ORTHO05D003245 3.1e-18 95.5 103 49.5
Mapoly0102s0034 Marchantia polymorpha HOM05D003147 ORTHO05D003245 3.1e-18 95.5 69 66.7
Potri.014G028000 Populus trichocarpa HOM05D003147 ORTHO05D003245 3.1e-18 95.5 89 51.7
PGR031G1312 Punica granatum HOM05D003147 ORTHO05D003245 3.1e-18 95.5 69 63.8
HPP92_010746 Vanilla planifolia HOM05D003147 ORTHO05D003245 3.1e-18 95.5 70 62.9
Sopen12g030700 Solanum pennellii HOM05D003147 ORTHO05D003245 4.1e-18 95.1 83 55.4
TAR381G0416 Trochodendron aralioides HOM05D003147 ORTHO05D003245 4.1e-18 95.1 63 65.1
arahy.Tifrunner.gnm1.ann1.191BIJ Arachis hypogaea HOM05D003147 ORTHO05D003245 5.3e-18 94.7 62 64.5
arahy.Tifrunner.gnm1.ann1.RR4AU3 Arachis hypogaea HOM05D003147 ORTHO05D003245 5.3e-18 94.7 62 64.5
Cfa018087 Carpinus fangiana HOM05D003147 ORTHO05D003245 5.3e-18 94.7 81 51.9
CDE08G1106 Ceratophyllum demersum HOM05D003147 ORTHO05D003245 5.3e-18 94.7 87 52.9
Solyc12g088810.3 Solanum lycopersicum HOM05D003147 ORTHO05D003245 5.3e-18 94.7 83 55.4
HPP92_011179 Vanilla planifolia HOM05D003147 ORTHO05D003245 5.3e-18 94.7 70 62.9
CSS0021141 Camellia sinensis var. sinensis HOM05D003147 ORTHO05D003245 7.0e-18 94.4 69 60.9
CiPaw.16G042800 Carya illinoinensis HOM05D003147 ORTHO05D003245 7.0e-18 94.4 96 47.9
FAN20G0187 Fragaria x ananassa HOM05D003147 ORTHO05D003245 7.0e-18 94.4 65 63.1
FAN27G0977 Fragaria x ananassa HOM05D003147 ORTHO05D003245 7.0e-18 94.4 65 63.1
Sabra14G0019100 Salix brachista HOM05D003147 ORTHO05D003245 7.0e-18 94.4 83 53.0
PGSC0003DMG400015440 Solanum tuberosum HOM05D003147 ORTHO05D003245 7.0e-18 94.4 83 55.4
THA.LOC104813228 Tarenaya hassleriana HOM05D003147 ORTHO05D003245 7.0e-18 94.4 69 63.8
Ca_13288_v3 Cicer arietinum L. HOM05D003147 ORTHO05D003245 9.1e-18 94.0 69 60.9
SMO364G0937 Selaginella moellendorffii HOM05D003147 ORTHO05D003245 9.1e-18 94.0 61 70.5
Prupe.1G434300 Prunus persica HOM05D003147 ORTHO05D003245 1.2e-17 93.6 81 51.9
PGR031G1159 Punica granatum HOM05D003147 ORTHO05D003245 1.2e-17 93.6 76 56.6
SGA_v2.0_scaffold203G41549 Striga asiatica HOM05D003147 ORTHO05D003245 1.2e-17 93.6 82 54.9
COL.COLO4_26521 Corchorus olitorius HOM05D003147 ORTHO05D003245 1.6e-17 93.2 86 51.2
FAN15G2685 Fragaria x ananassa HOM05D003147 ORTHO05D003245 1.6e-17 93.2 65 61.5
QL02p004661 Quercus lobata HOM05D003147 ORTHO05D003245 1.6e-17 93.2 63 63.5
GSVIVG01009483001 Vitis vinifera HOM05D003147 ORTHO05D003245 1.6e-17 93.2 69 59.4
BcaC08g42900 Brassica carinata HOM05D003147 ORTHO05D003245 2.0e-17 92.8 67 67.2
C06p01230 Brassica napus HOM05D003147 ORTHO05D003245 2.0e-17 92.8 67 67.2
Oeu049988.1 Olea europaea HOM05D003147 ORTHO05D003245 2.0e-17 92.8 102 51.0
TWI56G1062 Tripterygium wilfordii HOM05D003147 ORTHO05D003245 2.0e-17 92.8 63 65.1
Nn5g30284 Nelumbo nucifera HOM05D003147 ORTHO05D003245 2.6e-17 92.4 71 59.2
EL10Ac6g14533 Beta vulgaris HOM05D003147 ORTHO05D003245 3.5e-17 92.0 98 46.9
Nitab4.5_0001580g0090 Nicotiana tabacum HOM05D003147 ORTHO05D003245 3.5e-17 92.0 69 60.9
Nitab4.5_0003091g0020 Nicotiana tabacum HOM05D003147 ORTHO05D003245 3.5e-17 92.0 69 60.9
Sc15g0006080 Simmondsia chinensis HOM05D003147 ORTHO05D003245 3.5e-17 92.0 71 60.6
BolC6t35275H Brassica oleracea HOM05D003147 ORTHO05D003245 7.7e-17 90.9 67 65.7
Ciclev10000309m.g Citrus clementina HOM05D003147 ORTHO05D003245 7.7e-17 90.9 103 48.5
Eucgr.F02335 Eucalyptus grandis HOM05D003147 ORTHO05D003245 7.7e-17 90.9 66 60.6
Hund19148 Selenicereus undatus HOM05D003147 ORTHO05D003245 7.7e-17 90.9 63 65.1
Thecc.08G005700 Theobroma cacao HOM05D003147 ORTHO05D003245 7.7e-17 90.9 89 48.3
C06p01330 Brassica napus HOM05D003147 ORTHO05D003245 1.0e-16 90.5 67 65.7
Atru.chr13.705 Acer truncatum HOM05D003147 ORTHO05D003245 1.3e-16 90.1 124 40.3
Gohir.D06G017400 Gossypium hirsutum HOM05D003147 ORTHO05D003245 1.3e-16 90.1 86 48.8
Gorai.010G020300 Gossypium raimondii HOM05D003147 ORTHO05D003245 1.3e-16 90.1 86 48.8
Aqoxy3G03398 Aquilegia oxysepala HOM05D003147 ORTHO05D003245 1.7e-16 89.7 85 50.6
Aqoxy6G01308 Aquilegia oxysepala HOM05D003147 ORTHO05D003245 1.7e-16 89.7 85 50.6
MD15G1081500 Malus domestica HOM05D003147 ORTHO05D003245 1.7e-16 89.7 63 61.9
CAN.G1337.32 Capsicum annuum HOM05D003147 ORTHO05D003245 2.2e-16 89.4 84 53.6
Cpa.g.sc49.28 Carica papaya HOM05D003147 ORTHO05D003245 2.2e-16 89.4 84 51.2
Duzib116G0700 Durio zibethinus HOM05D003147 ORTHO05D003245 2.2e-16 89.4 67 59.7
SHI08266 Sapria himalayana HOM05D003147 ORTHO05D003245 2.2e-16 89.4 67 61.2
Gohir.A06G019000 Gossypium hirsutum HOM05D003147 ORTHO05D003245 2.9e-16 89.0 66 60.6
MSTRG.25085 Avicennia marina HOM05D003147 ORTHO05D003245 3.8e-16 88.6 102 47.1
Cc10_g04490 Coffea canephora HOM05D003147 ORTHO05D003245 3.8e-16 88.6 102 49.0
MELO3C016758.2 Cucumis melo HOM05D003147 ORTHO05D003245 3.8e-16 88.6 72 56.9
PGR031G3752 Punica granatum HOM05D003147 ORTHO05D003245 3.8e-16 88.6 70 61.4
Sed0005207 Sechium edule HOM05D003147 ORTHO05D003245 3.8e-16 88.6 72 58.3
unitig_26.g9814 Utricularia gibba HOM05D003147 ORTHO05D003245 5.0e-16 88.2 66 63.6
Ah.04g151790 Amaranthus hybridus HOM05D003147 ORTHO05D003245 6.5e-16 87.8 77 57.1
Aqoxy1G01929 Aquilegia oxysepala HOM05D003147 ORTHO05D003245 6.5e-16 87.8 85 49.4
CsaV3_4G034370 Cucumis sativus L. HOM05D003147 ORTHO05D003245 6.5e-16 87.8 72 56.9
Os03g0396900 Oryza sativa ssp. japonica HOM05D003147 ORTHO05D003245 6.5e-16 87.8 68 60.3
AUR62024450 Chenopodium quinoa HOM05D003147 ORTHO05D003245 8.5e-16 87.4 77 58.4
Duzib041G0245 Durio zibethinus HOM05D003147 ORTHO05D003245 8.5e-16 87.4 89 47.2
PSO675G4742 Papaver somniferum HOM05D003147 ORTHO05D003245 8.5e-16 87.4 61 62.3
SalBow7G4374 Salvia bowleyana HOM05D003147 ORTHO05D003245 8.5e-16 87.4 63 61.9
ClCG05G019930 Citrullus lanatus HOM05D003147 ORTHO05D003245 1.9e-15 86.3 63 58.7
PSO541G6107 Papaver somniferum HOM05D003147 ORTHO05D003245 1.9e-15 86.3 61 62.3
AUR62026039 Chenopodium quinoa HOM05D003147 ORTHO05D003245 3.2e-15 85.5 63 63.5
AagrBONN_evm.TU.Sc2ySwM_117.3050 Anthoceros agrestis HOM05D003147 ORTHO05D003245 5.5e-15 84.7 63 63.5
CBR_g31153 Chara braunii HOM05D003147 ORTHO05D003245 1.2e-14 83.6 61 60.7
Os06g0187100 Oryza sativa ssp. japonica HOM05D003147 ORTHO05D003245 1.6e-14 83.2 62 58.1
vmacro21514 Vaccinium macrocarpon HOM05D003147 ORTHO05D003245 6.1e-14 81.3 102 41.2
FAN24G2459 Fragaria x ananassa HOM05D003147 ORTHO05D003245 1.0e-13 80.5 83 50.6
Prupe.3G105200 Prunus persica HOM05D003147 ORTHO05D003245 1.0e-13 80.5 45 84.4
Zm00001eb374430 Zea mays HOM05D003147 ORTHO05D003245 2.3e-13 79.3 62 54.8
Cfa001840 Carpinus fangiana HOM05D003147 ORTHO05D003245 3.4e-12 75.5 45 75.6
Cre06.g290800 Chlamydomonas reinhardtii HOM05D003147 ORTHO05D003245 1.7e-11 73.2 68 50.0
Sp1g26420 Schrenkiella parvula HOM05D003147 ORTHO05D003245 6.3e-11 71.2 45 71.1
Gohir.D10G000801 Gossypium hirsutum HOM05D003147 ORTHO05D003245 1.0e-08 63.9 60 48.3
MCO01G346 Micromonas commoda HOM05D003147 ORTHO05D003245 2.2e-08 62.8 89 39.3
Hma1.2p1_2046F.1_g312420 Hydrangea macrophylla HOM05D003147 ORTHO05D003245 2.9e-08 62.4 49 57.1


User provided reference genes

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