Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0167581 Rosa chinensis HOM05D006569 ORTHO05D007515 2.9e-148 528.5 259 100.0
FAN05G0252 Fragaria x ananassa HOM05D006569 ORTHO05D007515 3.1e-113 412.1 226 89.4
FAN14G1478 Fragaria x ananassa HOM05D006569 ORTHO05D007515 4.0e-113 411.8 226 89.4
FAN09G2200 Fragaria x ananassa HOM05D006569 ORTHO05D007515 2.2e-111 406.0 226 88.1
FvH4_6g48150 Fragaria vesca HOM05D006569 ORTHO05D007515 3.7e-111 405.2 226 87.2
FAN02G1154 Fragaria x ananassa HOM05D006569 ORTHO05D007515 1.2e-109 400.2 222 89.2
Prupe.3G265200 Prunus persica HOM05D006569 ORTHO05D007515 1.1e-97 360.5 257 69.3
FAN09G3888 Fragaria x ananassa HOM05D006569 ORTHO05D007515 5.4e-94 348.2 228 77.6
MD09G1053400 Malus domestica HOM05D006569 ORTHO05D007515 9.6e-91 337.4 239 68.6
FvH4_6g48880 Fragaria vesca HOM05D006569 ORTHO05D007515 1.4e-81 307.0 201 78.1
Cfa007985 Carpinus fangiana HOM05D006569 ORTHO05D007515 4.5e-80 302.0 227 63.4
Haze_14089 Corylus avellana HOM05D006569 ORTHO05D007515 1.7e-79 300.1 227 62.6
RcHm_v2.0_Chr2g0167491 Rosa chinensis HOM05D006569 ORTHO05D007515 1.7e-79 300.1 226 69.9
CANSAT64G0455 Cannabis sativa HOM05D006569 ORTHO05D007515 1.5e-75 287.0 250 53.2
QL02p053824 Quercus lobata HOM05D006569 ORTHO05D007515 3.3e-75 285.8 222 62.6
Ciclev10013587m.g Citrus clementina HOM05D006569 ORTHO05D007515 1.6e-74 283.5 223 60.1
CiPaw.04G004700 Carya illinoinensis HOM05D006569 ORTHO05D007515 2.8e-74 282.7 226 61.5
Potri.017G086000 Populus trichocarpa HOM05D006569 ORTHO05D007515 5.3e-73 278.5 258 53.9
GSVIVG01011442001 Vitis vinifera HOM05D006569 ORTHO05D007515 3.2e-70 269.2 215 61.9
Dinv33774 Davidia involucrata HOM05D006569 ORTHO05D007515 1.6e-69 266.9 215 60.0
FAN05G1756 Fragaria x ananassa HOM05D006569 ORTHO05D007515 1.6e-69 266.9 136 91.2
Rhsim10G0036300 Rhododendron simsii HOM05D006569 ORTHO05D007515 1.6e-69 266.9 226 58.0
Sabra17G0075800 Salix brachista HOM05D006569 ORTHO05D007515 7.9e-69 264.6 258 52.7
FvH4_6g47953 Fragaria vesca HOM05D006569 ORTHO05D007515 8.7e-68 261.2 136 89.7
Nitab4.5_0003653g0010 Nicotiana tabacum HOM05D006569 ORTHO05D007515 2.1e-66 256.5 258 48.4
TWI60G0939 Tripterygium wilfordii HOM05D006569 ORTHO05D007515 3.7e-66 255.8 235 51.1
Lj6g0009481 Lotus japonicus HOM05D006569 ORTHO05D007515 1.4e-65 253.8 225 54.2
CSS0028247 Camellia sinensis var. sinensis HOM05D006569 ORTHO05D007515 4.0e-65 252.3 216 58.3
Atru.chr8.291 Acer truncatum HOM05D006569 ORTHO05D007515 1.2e-64 250.8 235 54.0
Nitab4.5_0000212g0030 Nicotiana tabacum HOM05D006569 ORTHO05D007515 2.2e-63 246.5 258 46.5
Lalb_Chr15g0081471 Lupinus albus HOM05D006569 ORTHO05D007515 4.9e-63 245.4 233 51.1
ClCG09G010340 Citrullus lanatus HOM05D006569 ORTHO05D007515 6.5e-63 245.0 222 53.6
Lju41C9T14 Lonicera japonica HOM05D006569 ORTHO05D007515 6.5e-63 245.0 215 55.8
Oeu010220.1 Olea europaea HOM05D006569 ORTHO05D007515 6.5e-63 245.0 241 50.6
Solyc02g067200.4 Solanum lycopersicum HOM05D006569 ORTHO05D007515 6.5e-63 245.0 258 46.1
FAN09G1632 Fragaria x ananassa HOM05D006569 ORTHO05D007515 8.4e-63 244.6 155 82.6
Sopen02g016380 Solanum pennellii HOM05D006569 ORTHO05D007515 8.4e-63 244.6 258 45.3
HanXRQChr07g0199321 Helianthus annuus HOM05D006569 ORTHO05D007515 1.2e-61 240.7 240 45.8
Peaxi162Scf00011g00263 Petunia axillaris HOM05D006569 ORTHO05D007515 2.7e-61 239.6 258 44.6
MELO3C023650.2 Cucumis melo HOM05D006569 ORTHO05D007515 3.5e-61 239.2 223 52.9
Hund15592 Selenicereus undatus HOM05D006569 ORTHO05D007515 3.5e-61 239.2 230 51.7
PGSC0003DMG400025133 Solanum tuberosum HOM05D006569 ORTHO05D007515 3.5e-61 239.2 258 45.0
Sc10g0003480 Simmondsia chinensis HOM05D006569 ORTHO05D007515 4.6e-61 238.8 258 45.3
Manes.01G092900 Manihot esculenta HOM05D006569 ORTHO05D007515 1.0e-60 237.7 223 52.9
CAN.G1103.13 Capsicum annuum HOM05D006569 ORTHO05D007515 1.3e-60 237.3 250 47.2
Duzib264G1306 Durio zibethinus HOM05D006569 ORTHO05D007515 1.8e-60 236.9 229 50.7
TAR371G0591 Trochodendron aralioides HOM05D006569 ORTHO05D007515 1.8e-60 236.9 219 56.2
CsaV3_7G024320 Cucumis sativus L. HOM05D006569 ORTHO05D007515 5.1e-60 235.3 223 52.5
Medtr3g053000 Medicago truncatula HOM05D006569 ORTHO05D007515 1.5e-59 233.8 248 48.4
arahy.Tifrunner.gnm1.ann1.80L4ZA Arachis hypogaea HOM05D006569 ORTHO05D007515 3.3e-59 232.6 241 49.4
THA.LOC104822352 Tarenaya hassleriana HOM05D006569 ORTHO05D007515 8.2e-58 228.0 249 46.2
AUR62018101 Chenopodium quinoa HOM05D006569 ORTHO05D007515 1.1e-57 227.6 254 46.1
Eucgr.I01955 Eucalyptus grandis HOM05D006569 ORTHO05D007515 4.1e-57 225.7 237 47.7
Cpa.g.sc14.98 Carica papaya HOM05D006569 ORTHO05D007515 9.0e-57 224.6 225 49.8
Glyma.18G093100 Glycine max HOM05D006569 ORTHO05D007515 9.0e-57 224.6 235 48.9
SGA_v2.0_scaffold236G43766 Striga asiatica HOM05D006569 ORTHO05D007515 1.3e-55 220.7 250 43.2
TPR.G33795 Trifolium pratense HOM05D006569 ORTHO05D007515 2.2e-55 219.9 228 47.8
AUR62034434 Chenopodium quinoa HOM05D006569 ORTHO05D007515 5.0e-55 218.8 254 42.5
Sed0017024 Sechium edule HOM05D006569 ORTHO05D007515 1.9e-54 216.9 224 50.4
Aqoxy3G03442 Aquilegia oxysepala HOM05D006569 ORTHO05D007515 1.6e-53 213.8 226 48.7
DCAR_021661 Daucus carota HOM05D006569 ORTHO05D007515 4.6e-53 212.2 223 48.9
VMungo0540G0528 Vigna mungo HOM05D006569 ORTHO05D007515 3.9e-52 209.1 235 46.0
Psat5g175080 Pisum sativum HOM05D006569 ORTHO05D007515 1.1e-51 207.6 228 47.4
ECA238G4289 Erigeron canadensis HOM05D006569 ORTHO05D007515 2.0e-51 206.8 216 45.4
Ca_14754_v3 Cicer arietinum L. HOM05D006569 ORTHO05D007515 3.3e-51 206.1 224 48.2
Cc07_g03540 Coffea canephora HOM05D006569 ORTHO05D007515 2.6e-48 196.4 229 44.1
MSTRG.15471 Avicennia marina HOM05D006569 ORTHO05D007515 3.4e-48 196.1 216 49.5
SalBow6G2371 Salvia bowleyana HOM05D006569 ORTHO05D007515 5.0e-47 192.2 211 47.4
Migut.K01310 Erythranthe guttata HOM05D006569 ORTHO05D007515 1.1e-46 191.0 214 46.3
EL10Ac2g03001 Beta vulgaris HOM05D006569 ORTHO05D007515 1.4e-46 190.7 222 45.0
Aa31LG11G14260 Aethionema arabicum HOM05D006569 ORTHO05D007515 4.2e-46 189.1 223 43.5
Ah.10g031720 Amaranthus hybridus HOM05D006569 ORTHO05D007515 5.5e-46 188.7 221 42.1
CARHR198030 Cardamine hirsuta HOM05D006569 ORTHO05D007515 7.2e-46 188.3 215 44.2
PGR004G0299 Punica granatum HOM05D006569 ORTHO05D007515 7.2e-46 188.3 205 48.3
Sp6g28790 Schrenkiella parvula HOM05D006569 ORTHO05D007515 1.6e-45 187.2 215 45.1
AT5G15280 Arabidopsis thaliana HOM05D006569 ORTHO05D007515 2.1e-45 186.8 223 43.0
Lsat_1_v5_gn_2_89461 Lactuca sativa HOM05D006569 ORTHO05D007515 3.6e-45 186.0 202 45.0
BolC2t06696H Brassica oleracea HOM05D006569 ORTHO05D007515 6.1e-45 185.3 219 43.8
Carub.0006s1347 Capsella rubella HOM05D006569 ORTHO05D007515 6.1e-45 185.3 219 43.4
C02p07640 Brassica napus HOM05D006569 ORTHO05D007515 1.0e-44 184.5 219 43.8
BcaC03g13417 Brassica carinata HOM05D006569 ORTHO05D007515 2.3e-44 183.3 219 43.8
PSO832G0544 Papaver somniferum HOM05D006569 ORTHO05D007515 2.3e-44 183.3 215 44.2
Thecc.04G085700 Theobroma cacao HOM05D006569 ORTHO05D007515 3.0e-44 183.0 185 49.7
PSO013G0141 Papaver somniferum HOM05D006569 ORTHO05D007515 6.7e-44 181.8 216 43.1
AL6G26150 Arabidopsis lyrata HOM05D006569 ORTHO05D007515 2.6e-43 179.9 215 42.8
BraA02t05270Z Brassica rapa HOM05D006569 ORTHO05D007515 9.1e-41 171.4 216 43.1
Zm00001eb005280 Zea mays HOM05D006569 ORTHO05D007515 2.6e-40 169.9 250 39.2
BcaNung03317 Brassica carinata HOM05D006569 ORTHO05D007515 6.5e-39 165.2 217 41.0
MBI05_g41591_MAGBIO Magnolia biondii HOM05D006569 ORTHO05D007515 4.2e-38 162.5 210 44.8
CDE04G0154 Ceratophyllum demersum HOM05D006569 ORTHO05D007515 1.6e-37 160.6 241 32.8
Thhalv10012473m.g Eutrema salsugineum HOM05D006569 ORTHO05D007515 2.3e-36 156.8 202 40.6
A02p02990 Brassica napus HOM05D006569 ORTHO05D007515 1.8e-33 147.1 202 40.6
HPP92_012798 Vanilla planifolia HOM05D006569 ORTHO05D007515 7.7e-32 141.7 253 34.0
QL08p010038 Quercus lobata HOM05D006569 ORTHO05D007515 2.9e-31 139.8 92 63.0
ATR1145G048 Amborella trichopoda HOM05D006569 ORTHO05D007515 8.3e-26 121.7 202 38.1
QL02p057930 Quercus lobata HOM05D006569 ORTHO05D007515 1.2e-21 107.8 131 42.7
QL93p0100_0341 Quercus lobata HOM05D006569 ORTHO05D007515 3.6e-21 106.3 131 42.7
FAN05G1232 Fragaria x ananassa HOM05D006569 ORTHO05D007515 3.1e-17 93.2 50 92.0
MBI05_g36424_MAGBIO Magnolia biondii HOM05D006569 ORTHO05D007515 1.6e-13 80.9 57 61.4
ATR0721G158 Amborella trichopoda HOM05D003900 ORTHO05D005009 1.1e-06 58.2 189 22.8
Lj4g0021408 Lotus japonicus HOM05D003900 ORTHO05D015804 1.1e-06 58.2 221 20.8
BraA04t17002Z Brassica rapa HOM05D007358 ORTHO05D009117 1.5e-06 57.8 206 22.8
FAN01G0244 Fragaria x ananassa HOM05D006556 ORTHO05D008146 2.5e-06 57.0 179 25.7
Psat4g060760 Pisum sativum HOM05D002460 ORTHO05D002716 5.6e-06 55.8 155 27.7
ATR0743G006 Amborella trichopoda HOM05D008684 ORTHO05D010796 9.5e-06 55.1 129 27.9


User provided reference genes

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