Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0167541 Rosa chinensis HOM05D008101 ORTHO05D010163 3.5e-19 97.4 54 100.0
RcHm_v2.0_Chr2g0167501 Rosa chinensis HOM05D008101 ORTHO05D010163 7.7e-19 96.3 54 98.1
RcHm_v2.0_Chr2g0167591 Rosa chinensis HOM05D008101 ORTHO05D010163 1.3e-18 95.5 54 98.1
FvH4_6g48300 Fragaria vesca HOM05D008101 ORTHO05D010163 1.6e-16 88.6 49 95.9
FAN09G0090 Fragaria x ananassa HOM05D008101 ORTHO05D010163 1.6e-16 88.6 49 95.9
FAN14G5148 Fragaria x ananassa HOM05D008101 ORTHO05D010163 1.6e-16 88.6 49 95.9
FAN09G1556 Fragaria x ananassa HOM05D008101 ORTHO05D010163 1.0e-15 85.9 48 95.8
FAN05G3293 Fragaria x ananassa HOM05D008101 ORTHO05D010163 5.2e-15 83.6 48 93.8
FAN02G2446 Fragaria x ananassa HOM05D008101 ORTHO05D010163 1.2e-14 82.4 48 91.7
Dinv33773 Davidia involucrata HOM05D008101 ORTHO05D010163 1.5e-14 82.0 52 76.9
Manes.02G047600 Manihot esculenta HOM05D008101 ORTHO05D010163 3.4e-14 80.9 52 80.8
Thecc.04G085600 Theobroma cacao HOM05D008101 ORTHO05D010163 4.4e-14 80.5 54 77.8
CiPaw.03G024700 Carya illinoinensis HOM05D008101 ORTHO05D010163 5.7e-14 80.1 54 77.8
Gohir.D07G212050 Gossypium hirsutum HOM05D008101 ORTHO05D010163 1.3e-13 79.0 54 74.1
Gorai.001G239800 Gossypium raimondii HOM05D008101 ORTHO05D010163 1.3e-13 79.0 54 74.1
Potri.010G234200 Populus trichocarpa HOM05D008101 ORTHO05D010163 1.3e-13 79.0 54 77.8
Gohir.A07G206000 Gossypium hirsutum HOM05D008101 ORTHO05D010163 1.7e-13 78.6 54 72.2
CSS0047461 Camellia sinensis var. sinensis HOM05D008101 ORTHO05D010163 4.9e-13 77.0 51 72.5
Cc07_g03530 Coffea canephora HOM05D008101 ORTHO05D010163 2.4e-12 74.7 54 72.2
Migut.H00938 Erythranthe guttata HOM05D008101 ORTHO05D010163 2.0e-11 71.6 54 70.4
FAN05G0138 Fragaria x ananassa HOM05D000576 ORTHO05D010163 2.0e-11 71.6 41 95.1
FAN23G1982 Fragaria x ananassa HOM05D000576 ORTHO05D010163 2.0e-11 71.6 41 95.1
PGR083G0374 Punica granatum HOM05D008101 ORTHO05D010163 2.0e-11 71.6 54 68.5
Prupe.3G265300 Prunus persica HOM05D008101 ORTHO05D010163 2.7e-11 71.2 54 70.4
Nn4g23220 Nelumbo nucifera HOM05D008101 ORTHO05D010163 1.0e-10 69.3 54 64.8
Phvul.004G030000 Phaseolus vulgaris HOM05D008101 ORTHO05D010163 1.3e-10 68.9 54 66.7
Glyma.13G062100 Glycine max HOM05D008101 ORTHO05D010163 2.9e-10 67.8 54 68.5
MD09G1053300 Malus domestica HOM05D008101 ORTHO05D010163 5.0e-10 67.0 54 66.7
Aqoxy3G03441 Aquilegia oxysepala HOM05D008101 ORTHO05D010163 1.1e-09 65.9 56 64.3
Rhsim10G0036400 Rhododendron simsii HOM05D018356 ORTHO05D010163 1.1e-09 65.9 49 65.3
CAN.G206.165 Capsicum annuum HOM05D008101 ORTHO05D010163 1.5e-09 65.5 54 63.0
Os04g0460350 Oryza sativa ssp. japonica HOM05D008101 ORTHO05D010163 1.5e-09 65.5 54 63.0
Sed0001905 Sechium edule HOM05D008101 ORTHO05D010163 1.5e-09 65.5 54 64.8
Sopen02g032840 Solanum pennellii HOM05D008101 ORTHO05D010163 4.3e-09 63.9 54 61.1
Carub.0007s3631 Capsella rubella HOM05D008101 ORTHO05D010163 5.6e-09 63.5 52 65.4
SalBow1G0549 Salvia bowleyana HOM05D008101 ORTHO05D010163 5.6e-09 63.5 54 66.7
SalBow1G6176 Salvia bowleyana HOM05D008101 ORTHO05D010163 5.6e-09 63.5 54 66.7
THA.LOC109116617 Tarenaya hassleriana HOM05D008101 ORTHO05D010163 5.6e-09 63.5 50 64.0
Medtr6g012640 Medicago truncatula HOM05D008101 ORTHO05D010163 7.3e-09 63.2 51 66.7
Nn3g17291 Nelumbo nucifera HOM05D008101 ORTHO05D010163 9.5e-09 62.8 54 57.4
SalBow8G3752 Salvia bowleyana HOM05D008101 ORTHO05D010163 9.5e-09 62.8 54 66.7
SEGI_19148 Sequoiadendron giganteum HOM05D008101 ORTHO05D010163 1.2e-08 62.4 48 66.7
EL10Ac9g21543 Beta vulgaris HOM05D008101 ORTHO05D010163 2.8e-08 61.2 49 61.2
ClCG10G015220 Citrullus lanatus HOM05D008101 ORTHO05D010163 1.0e-07 59.3 50 66.0
Aa31LG2G4160 Aethionema arabicum HOM05D008101 ORTHO05D010163 3.1e-07 57.8 52 57.7
Lsat_1_v5_gn_4_179321 Lactuca sativa HOM05D008101 ORTHO05D010163 3.1e-07 57.8 51 58.8
Lsat_1_v5_gn_4_182661 Lactuca sativa HOM05D008101 ORTHO05D010163 6.8e-07 56.6 51 56.9
BcaC06g33664 Brassica carinata HOM05D008101 ORTHO05D010163 8.9e-07 56.2 52 59.6
BcaC06g33665 Brassica carinata HOM05D008101 ORTHO05D010163 8.9e-07 56.2 52 59.6
C07p37940 Brassica napus HOM05D008101 ORTHO05D010163 8.9e-07 56.2 52 59.6
BolC7t44316H Brassica oleracea HOM05D008101 ORTHO05D010163 8.9e-07 56.2 52 59.6
Lj2g0000476 Lotus japonicus HOM05D008101 ORTHO05D010163 1.2e-06 55.8 54 59.3
CARHR152140 Cardamine hirsuta HOM05D008101 ORTHO05D010163 1.5e-06 55.5 52 57.7
Sp2g17670 Schrenkiella parvula HOM05D008101 ORTHO05D010163 1.5e-06 55.5 52 57.7
Solyc02g088130.1 Solanum lycopersicum HOM05D008101 ORTHO05D010163 1.5e-06 55.5 48 60.4
A06p40170 Brassica napus HOM05D008101 ORTHO05D010163 2.0e-06 55.1 52 57.7
BolC2t11574H Brassica oleracea HOM05D008101 ORTHO05D010163 2.0e-06 55.1 52 57.7
BraA06t26932Z Brassica rapa HOM05D008101 ORTHO05D010163 2.0e-06 55.1 52 57.7
Lsat_1_v5_gn_4_179600 Lactuca sativa HOM05D008101 ORTHO05D010163 2.0e-06 55.1 48 60.4
BcaC06g30874 Brassica carinata HOM05D008101 ORTHO05D010163 2.6e-06 54.7 52 57.7
BcaB07g30101 Brassica carinata HOM05D008101 ORTHO05D010163 3.4e-06 54.3 52 57.7
BcaC03g17547 Brassica carinata HOM05D008101 ORTHO05D010163 3.4e-06 54.3 52 57.7
C02p55260 Brassica napus HOM05D008101 ORTHO05D010163 3.4e-06 54.3 52 57.7
AL5G18900 Arabidopsis lyrata HOM05D008101 ORTHO05D010163 4.4e-06 53.9 52 55.8
C02p56620 Brassica napus HOM05D008101 ORTHO05D010163 4.4e-06 53.9 52 57.7
Carub.0005s0764 Capsella rubella HOM05D008101 ORTHO05D010163 4.4e-06 53.9 52 55.8
BcaC03g17658 Brassica carinata HOM05D008101 ORTHO05D010163 5.8e-06 53.5 52 55.8
BolC2t11721H Brassica oleracea HOM05D008101 ORTHO05D010163 5.8e-06 53.5 52 55.8
AT3G29034 Arabidopsis thaliana HOM05D008101 ORTHO05D010163 7.5e-06 53.1 52 55.8
MBI02_g12271_MAGBIO Magnolia biondii HOM05D008101 ORTHO05D010163 9.8e-06 52.8 45 55.6


User provided reference genes

Program Settings