Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0166591 Rosa chinensis HOM05D003681 ORTHO05D004703 2.8e-39 164.9 85 100.0
RcHm_v2.0_Chr2g0174171 Rosa chinensis HOM05D003681 ORTHO05D004703 3.3e-32 141.4 76 97.4
Lj7A605G77 Lonicera japonica HOM05D003681 ORTHO05D004703 7.4e-32 140.2 76 96.1
MD09G1017400 Malus domestica HOM05D003681 ORTHO05D004703 7.4e-32 140.2 76 96.1
CiPaw.03G050400 Carya illinoinensis HOM05D003681 ORTHO05D004703 9.6e-32 139.8 76 94.7
Cc07_g00400 Coffea canephora HOM05D003681 ORTHO05D004703 9.6e-32 139.8 76 96.1
FvH4_6g52640 Fragaria vesca HOM05D003681 ORTHO05D004703 9.6e-32 139.8 76 96.1
FAN02G4174 Fragaria x ananassa HOM05D003681 ORTHO05D004703 9.6e-32 139.8 76 96.1
FAN05G4404 Fragaria x ananassa HOM05D003681 ORTHO05D004703 9.6e-32 139.8 76 96.1
FAN09G4630 Fragaria x ananassa HOM05D003681 ORTHO05D004703 9.6e-32 139.8 76 96.1
FAN14G5093 Fragaria x ananassa HOM05D003681 ORTHO05D004703 9.6e-32 139.8 76 96.1
Sabra16G0218500 Salix brachista HOM05D003681 ORTHO05D004703 9.6e-32 139.8 76 96.1
Nitab4.5_0000040g0490 Nicotiana tabacum HOM05D003681 ORTHO05D004703 1.3e-31 139.4 73 98.6
Nitab4.5_0008718g0020 Nicotiana tabacum HOM05D003681 ORTHO05D004703 1.3e-31 139.4 73 98.6
PSO017G2495 Papaver somniferum HOM05D003681 ORTHO05D004703 1.3e-31 139.4 76 96.1
PSO478G5006 Papaver somniferum HOM05D003681 ORTHO05D004703 1.3e-31 139.4 76 96.1
CiPaw.04G033000 Carya illinoinensis HOM05D003681 ORTHO05D004703 1.6e-31 139.0 76 94.7
HanXRQChr07g0199161 Helianthus annuus HOM05D003681 ORTHO05D004703 1.6e-31 139.0 76 94.7
CSS0025950 Camellia sinensis var. sinensis HOM05D003681 ORTHO05D004703 2.1e-31 138.7 76 94.7
ECA238G4183 Erigeron canadensis HOM05D003681 ORTHO05D004703 2.1e-31 138.7 76 94.7
MD17G1018200 Malus domestica HOM05D003681 ORTHO05D004703 2.1e-31 138.7 76 94.7
Potri.001G337600 Populus trichocarpa HOM05D003681 ORTHO05D004703 2.1e-31 138.7 76 94.7
Potri.001G337700 Populus trichocarpa HOM05D003681 ORTHO05D004703 2.1e-31 138.7 76 94.7
QL02p072923 Quercus lobata HOM05D003681 ORTHO05D004703 2.1e-31 138.7 76 94.7
TAR374G1355 Trochodendron aralioides HOM05D003681 ORTHO05D004703 2.1e-31 138.7 76 94.7
TAR374G1530 Trochodendron aralioides HOM05D003681 ORTHO05D004703 2.1e-31 138.7 76 94.7
vmacro05923 Vaccinium macrocarpon HOM05D003681 ORTHO05D004703 2.1e-31 138.7 76 94.7
MSTRG.3111 Avicennia marina HOM05D003681 ORTHO05D004703 2.8e-31 138.3 76 94.7
Cfa007279 Carpinus fangiana HOM05D003681 ORTHO05D004703 2.8e-31 138.3 76 94.7
ClCG05G013220 Citrullus lanatus HOM05D003681 ORTHO05D004703 2.8e-31 138.3 76 94.7
COL.COLO4_29274 Corchorus olitorius HOM05D003681 ORTHO05D004703 2.8e-31 138.3 76 94.7
CsaV3_3G027310 Cucumis sativus L. HOM05D003681 ORTHO05D004703 2.8e-31 138.3 76 94.7
Dinv25694 Davidia involucrata HOM05D003681 ORTHO05D004703 2.8e-31 138.3 76 93.4
Prupe.3G299500 Prunus persica HOM05D003681 ORTHO05D004703 2.8e-31 138.3 76 93.4
SalBow1G2960 Salvia bowleyana HOM05D003681 ORTHO05D004703 2.8e-31 138.3 76 94.7
SalBow1G7977 Salvia bowleyana HOM05D003681 ORTHO05D004703 2.8e-31 138.3 76 94.7
Sed0015235 Sechium edule HOM05D003681 ORTHO05D004703 2.8e-31 138.3 76 94.7
Sed0021158 Sechium edule HOM05D003681 ORTHO05D004703 2.8e-31 138.3 76 94.7
SGA_v2.0_scaffold18G08242 Striga asiatica HOM05D003681 ORTHO05D004703 2.8e-31 138.3 76 94.7
Thecc.04G027500 Theobroma cacao HOM05D003681 ORTHO05D004703 2.8e-31 138.3 76 94.7
Ciclev10014307m.g Citrus clementina HOM05D003681 ORTHO05D004703 3.7e-31 137.9 76 93.4
Dinv33384 Davidia involucrata HOM05D003681 ORTHO05D004703 3.7e-31 137.9 76 93.4
Migut.H00059 Erythranthe guttata HOM05D003681 ORTHO05D004703 3.7e-31 137.9 76 94.7
Hma1.2p1_0279F.1_g112260 Hydrangea macrophylla HOM05D003681 ORTHO05D004703 3.7e-31 137.9 76 93.4
PGR142G3554 Punica granatum HOM05D003681 ORTHO05D004703 3.7e-31 137.9 76 93.4
Lsat_1_v5_gn_2_93641 Lactuca sativa HOM05D003681 ORTHO05D004703 4.8e-31 137.5 76 93.4
SGA_v2.0_scaffold135G34941 Striga asiatica HOM05D003681 ORTHO05D004703 4.8e-31 137.5 76 93.4
Cpa.g.sc130.41 Carica papaya HOM05D003681 ORTHO05D004703 6.2e-31 137.1 76 93.4
Eucgr.I01693 Eucalyptus grandis HOM05D003681 ORTHO05D004703 6.2e-31 137.1 76 93.4
Gohir.A11G065000 Gossypium hirsutum HOM05D003681 ORTHO05D004703 6.2e-31 137.1 76 93.4
Gorai.007G074100 Gossypium raimondii HOM05D003681 ORTHO05D004703 6.2e-31 137.1 76 93.4
Nn4g22444 Nelumbo nucifera HOM05D003681 ORTHO05D004703 6.2e-31 137.1 76 93.4
THA.LOC104805345 Tarenaya hassleriana HOM05D003681 ORTHO05D004703 6.2e-31 137.1 76 93.4
Aqoxy3G01435 Aquilegia oxysepala HOM05D003681 ORTHO05D004703 8.1e-31 136.7 76 93.4
CANSAT64G2654 Cannabis sativa HOM05D003681 ORTHO05D004703 8.1e-31 136.7 76 92.1
Duzib187G0106 Durio zibethinus HOM05D003681 ORTHO05D004703 8.1e-31 136.7 76 93.4
Manes.15G156300 Manihot esculenta HOM05D003681 ORTHO05D004703 8.1e-31 136.7 76 93.4
Rhsim10G0011100 Rhododendron simsii HOM05D003681 ORTHO05D004703 8.1e-31 136.7 75 94.7
Sabra16G0218400 Salix brachista HOM05D003681 ORTHO05D004703 8.1e-31 136.7 76 93.4
Actinidia36165 Actinidia chinensis HOM05D003681 ORTHO05D004703 1.1e-30 136.3 76 92.1
SGA_v2.0_scaffold135G34947 Striga asiatica HOM05D003681 ORTHO05D004703 1.1e-30 136.3 76 92.1
Actinidia18423 Actinidia chinensis HOM05D003681 ORTHO05D004703 1.4e-30 136.0 76 93.4
Aa31LG9G900 Aethionema arabicum HOM05D003681 ORTHO05D004703 1.4e-30 136.0 76 92.1
Manes.17G107300 Manihot esculenta HOM05D003681 ORTHO05D004703 1.4e-30 136.0 76 92.1
Gohir.D11G069300 Gossypium hirsutum HOM05D003681 ORTHO05D004703 1.8e-30 135.6 76 92.1
Peaxi162Scf00420g00351 Petunia axillaris HOM05D003681 ORTHO05D004703 1.8e-30 135.6 76 90.8
GSVIVG01001851001 Vitis vinifera HOM05D003681 ORTHO05D004703 1.8e-30 135.6 76 92.1
CAN.G1057.25 Capsicum annuum HOM05D003681 ORTHO05D004703 2.4e-30 135.2 73 95.9
Rhsim08G0046300 Rhododendron simsii HOM05D003681 ORTHO05D004703 2.4e-30 135.2 76 90.8
Solyc02g067990.3 Solanum lycopersicum HOM05D003681 ORTHO05D004703 2.4e-30 135.2 73 95.9
Sopen02g017120 Solanum pennellii HOM05D003681 ORTHO05D004703 2.4e-30 135.2 73 95.9
PGSC0003DMG400006971 Solanum tuberosum HOM05D003681 ORTHO05D004703 2.4e-30 135.2 73 95.9
TWI36G0744 Tripterygium wilfordii HOM05D003681 ORTHO05D004703 2.4e-30 135.2 80 86.2
Atru.chr6.2486 Acer truncatum HOM05D003681 ORTHO05D004703 3.1e-30 134.8 76 93.4
Nitab4.5_0001863g0130 Nicotiana tabacum HOM05D003681 ORTHO05D004703 3.1e-30 134.8 76 90.8
Actinidia16950 Actinidia chinensis HOM05D003681 ORTHO05D004703 4.0e-30 134.4 76 92.1
AL7G49000 Arabidopsis lyrata HOM05D003681 ORTHO05D004703 4.0e-30 134.4 76 90.8
AT5G40740 Arabidopsis thaliana HOM05D003681 ORTHO05D004703 4.0e-30 134.4 76 90.8
Carub.0007s3474 Capsella rubella HOM05D003681 ORTHO05D004703 4.0e-30 134.4 76 90.8
CAN.G473.58 Capsicum annuum HOM05D003681 ORTHO05D004703 4.0e-30 134.4 76 92.1
Thhalv10027657m.g Eutrema salsugineum HOM05D003681 ORTHO05D004703 4.0e-30 134.4 76 90.8
Lj2g0006828 Lotus japonicus HOM05D003681 ORTHO05D004703 4.0e-30 134.4 76 92.1
Oeu050433.3 Olea europaea HOM05D003681 ORTHO05D004703 4.0e-30 134.4 76 90.8
Glyma.05G073400 Glycine max HOM05D003681 ORTHO05D004703 5.3e-30 134.0 76 90.8
Glyma.19G077600 Glycine max HOM05D003681 ORTHO05D004703 5.3e-30 134.0 76 90.8
Gohir.D09G033600 Gossypium hirsutum HOM05D003681 ORTHO05D004703 5.3e-30 134.0 76 92.1
Gorai.006G038600 Gossypium raimondii HOM05D003681 ORTHO05D004703 5.3e-30 134.0 76 92.1
Phvul.004G057300 Phaseolus vulgaris HOM05D003681 ORTHO05D004703 5.3e-30 134.0 76 90.8
Sc03g0006880 Simmondsia chinensis HOM05D003681 ORTHO05D004703 5.3e-30 134.0 76 92.1
Sc03g0007020 Simmondsia chinensis HOM05D003681 ORTHO05D004703 5.3e-30 134.0 76 92.1
VMungo0464G1197 Vigna mungo HOM05D003681 ORTHO05D004703 5.3e-30 134.0 76 90.8
QL09p045970 Quercus lobata HOM05D003681 ORTHO05D004703 6.9e-30 133.7 76 90.8
vmacro18313 Vaccinium macrocarpon HOM05D003681 ORTHO05D004703 6.9e-30 133.7 76 89.5
Gohir.A09G033400 Gossypium hirsutum HOM05D003681 ORTHO05D004703 9.0e-30 133.3 76 90.8
BcaB02g07929 Brassica carinata HOM05D003681 ORTHO05D004703 1.2e-29 132.9 76 89.5
BcaC08g44481 Brassica carinata HOM05D003681 ORTHO05D004703 1.2e-29 132.9 76 89.5
A07p20510 Brassica napus HOM05D003681 ORTHO05D004703 1.2e-29 132.9 76 89.5
C06p19360 Brassica napus HOM05D003681 ORTHO05D004703 1.2e-29 132.9 76 89.5
BolC6t37131H Brassica oleracea HOM05D003681 ORTHO05D004703 1.2e-29 132.9 76 89.5
BraA07t29742Z Brassica rapa HOM05D003681 ORTHO05D004703 1.2e-29 132.9 76 89.5
CARHR213770 Cardamine hirsuta HOM05D003681 ORTHO05D004703 1.2e-29 132.9 76 89.5
Solyc02g093810.3 Solanum lycopersicum HOM05D003681 ORTHO05D004703 1.2e-29 132.9 76 90.8
Sopen02g038450 Solanum pennellii HOM05D003681 ORTHO05D004703 1.2e-29 132.9 76 90.8
BcaB06g27549 Brassica carinata HOM05D003681 ORTHO05D004703 1.5e-29 132.5 76 89.5
A04p13760 Brassica napus HOM05D003681 ORTHO05D004703 1.5e-29 132.5 76 89.5
C04p47540 Brassica napus HOM05D003681 ORTHO05D004703 1.5e-29 132.5 76 89.5
BolC4t26356H Brassica oleracea HOM05D003681 ORTHO05D004703 1.5e-29 132.5 76 89.5
BraA04t17035Z Brassica rapa HOM05D003681 ORTHO05D004703 1.5e-29 132.5 76 89.5
CSS0007013 Camellia sinensis var. sinensis HOM05D003681 ORTHO05D004703 1.5e-29 132.5 76 89.5
CSS0035050 Camellia sinensis var. sinensis HOM05D003681 ORTHO05D004703 1.5e-29 132.5 76 89.5
Sp7g01150 Schrenkiella parvula HOM05D003681 ORTHO05D004703 1.5e-29 132.5 76 89.5
TAR622G1195 Trochodendron aralioides HOM05D003681 ORTHO05D004703 1.5e-29 132.5 76 90.8
arahy.Tifrunner.gnm1.ann1.0QF2GW Arachis hypogaea HOM05D003681 ORTHO05D004703 2.0e-29 132.1 76 89.5
Oeu058755.3 Olea europaea HOM05D003681 ORTHO05D004703 2.0e-29 132.1 76 89.5
Peaxi162Scf00080g01724 Petunia axillaris HOM05D003681 ORTHO05D004703 2.6e-29 131.7 73 93.2
Nn3g16565 Nelumbo nucifera HOM05D003681 ORTHO05D004703 3.4e-29 131.3 76 85.5
Hund06716 Selenicereus undatus HOM05D003681 ORTHO05D004703 3.4e-29 131.3 76 89.5
PGSC0003DMG400020227 Solanum tuberosum HOM05D003681 ORTHO05D004703 3.4e-29 131.3 76 89.5
TWI12G0555 Tripterygium wilfordii HOM05D003681 ORTHO05D004703 3.4e-29 131.3 76 89.5
Medtr6g022730 Medicago truncatula HOM05D003681 ORTHO05D004703 4.5e-29 131.0 76 88.2
TAR371G0788 Trochodendron aralioides HOM05D003681 ORTHO05D004703 4.5e-29 131.0 76 88.2
Gorai.011G093100 Gossypium raimondii HOM05D003681 ORTHO05D004703 5.8e-29 130.6 76 88.2
Ca_04403_v3 Cicer arietinum L. HOM05D003681 ORTHO05D004703 9.9e-29 129.8 76 88.2
MBI11_g11079_MAGBIO Magnolia biondii HOM05D003681 ORTHO05D004703 9.9e-29 129.8 73 90.4
TPR.G36528 Trifolium pratense HOM05D003681 ORTHO05D004703 9.9e-29 129.8 76 86.8
AUR62035509 Chenopodium quinoa HOM05D003681 ORTHO05D004703 1.7e-28 129.0 76 88.2
AUR62036017 Chenopodium quinoa HOM05D003681 ORTHO05D004703 1.7e-28 129.0 76 88.2
Lalb_Chr02g0157941 Lupinus albus HOM05D003681 ORTHO05D004703 1.7e-28 129.0 76 88.2
Lalb_Chr21g0317601 Lupinus albus HOM05D003681 ORTHO05D004703 1.7e-28 129.0 76 88.2
Psat1g082400 Pisum sativum HOM05D003681 ORTHO05D004703 1.7e-28 129.0 76 86.8
QL07p006188 Quercus lobata HOM05D003681 ORTHO05D004703 2.2e-28 128.6 76 88.2
Gohir.D10G085200 Gossypium hirsutum HOM05D003681 ORTHO05D004703 2.9e-28 128.3 76 85.5
Gohir.A10G160600 Gossypium hirsutum HOM05D003681 ORTHO05D004703 8.4e-28 126.7 76 86.8
ATR0824G011 Amborella trichopoda HOM05D003681 ORTHO05D004703 2.4e-27 125.2 73 87.7
EL10Ac4g08610 Beta vulgaris HOM05D003681 ORTHO05D004703 3.2e-27 124.8 76 85.5
CDE07G0234 Ceratophyllum demersum HOM05D003681 ORTHO05D004703 3.2e-27 124.8 73 84.9
Os02g0329300 Oryza sativa ssp. japonica HOM05D003681 ORTHO05D004703 5.5e-27 124.0 72 87.5
Zm00001eb235200 Zea mays HOM05D003681 ORTHO05D004703 7.1e-27 123.6 72 86.1
HPP92_006269 Vanilla planifolia HOM05D003681 ORTHO05D004703 9.3e-27 123.2 73 84.9
SHI03860 Sapria himalayana HOM05D003681 ORTHO05D004703 1.3e-25 119.4 95 69.5
Mapoly0032s0042 Marchantia polymorpha HOM05D003681 ORTHO05D004703 1.4e-22 109.4 78 74.4
SEGI_13919 Sequoiadendron giganteum HOM05D003681 ORTHO05D004703 5.3e-22 107.5 78 73.1
Pp3c3_25790 Physcomitrium patens HOM05D003681 ORTHO05D004703 1.2e-21 106.3 78 74.4
SMO367G0854 Selaginella moellendorffii HOM05D003681 ORTHO05D004703 3.4e-21 104.8 78 73.1
Lj1g0019639 Lotus japonicus HOM05D003681 ORTHO05D004703 7.6e-21 103.6 72 73.6
unitig_744.g24365 Utricularia gibba HOM05D003681 ORTHO05D004703 2.9e-20 101.7 61 83.6
Haze_14813 Corylus avellana HOM05D003681 ORTHO05D004703 8.4e-20 100.1 76 73.7
unitig_21.g20482 Utricularia gibba HOM05D003681 ORTHO05D004703 2.5e-19 98.6 57 82.5
Pp3c13_14720 Physcomitrium patens HOM05D003681 ORTHO05D004703 3.2e-19 98.2 82 67.1
Pp3c13_14730 Physcomitrium patens HOM05D003681 ORTHO05D004703 3.2e-19 98.2 82 67.1
Lsat_1_v5_gn_2_93681 Lactuca sativa HOM05D006130 ORTHO05D007491 5.5e-19 97.4 50 96.0
Pp3c4_18170 Physcomitrium patens HOM05D003681 ORTHO05D004703 9.3e-19 96.7 74 70.3
DCAR_011289 Daucus carota HOM05D003681 ORTHO05D004703 1.3e-17 92.8 75 70.7
CBR_g66670 Chara braunii HOM05D003681 ORTHO05D004703 3.9e-17 91.3 75 62.7
SMO367G0417 Selaginella moellendorffii HOM05D003681 ORTHO05D004703 5.1e-17 90.9 65 75.4
SMO367G0212 Selaginella moellendorffii HOM05D003681 ORTHO05D004703 1.5e-16 89.4 78 66.7
SMO275G0001 Selaginella moellendorffii HOM05D003681 ORTHO05D004703 3.2e-11 71.6 52 73.1
SMO275G0043 Selaginella moellendorffii HOM05D003681 ORTHO05D030546 7.2e-11 70.5 53 71.7
AagrBONN_evm.TU.Sc2ySwM_228.437 Anthoceros agrestis HOM05D003681 ORTHO05D004703 2.4e-06 55.5 60 55.0


User provided reference genes

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