Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0166541 Rosa chinensis HOM05D005960 ORTHO05D007537 6.3e-274 946.8 472 100.0
FvH4_6g47510 Fragaria vesca HOM05D005960 ORTHO05D007537 2.4e-249 865.1 454 95.2
FAN05G2671 Fragaria x ananassa HOM05D005960 ORTHO05D007537 3.1e-249 864.8 456 94.7
MD17G1056600 Malus domestica HOM05D005960 ORTHO05D007537 2.2e-234 815.5 464 88.1
Cfa007624 Carpinus fangiana HOM05D005960 ORTHO05D007537 2.1e-229 798.9 454 87.7
TAR371G0518 Trochodendron aralioides HOM05D005960 ORTHO05D007537 1.2e-224 783.1 454 85.7
Atru.chr8.386 Acer truncatum HOM05D005960 ORTHO05D007537 1.6e-224 782.7 454 86.6
GSVIVG01011490001 Vitis vinifera HOM05D005960 ORTHO05D007537 1.6e-224 782.7 454 85.7
Manes.01G099100 Manihot esculenta HOM05D005960 ORTHO05D007537 3.9e-223 778.1 450 85.8
FAN14G4646 Fragaria x ananassa HOM05D005960 ORTHO05D007537 1.5e-222 776.2 454 87.4
Eucgr.I01985 Eucalyptus grandis HOM05D005960 ORTHO05D007537 2.5e-222 775.4 453 84.5
CSS0005506 Camellia sinensis var. sinensis HOM05D005960 ORTHO05D007537 3.3e-222 775.0 457 85.3
CSS0003743 Camellia sinensis var. sinensis HOM05D005960 ORTHO05D007537 4.3e-222 774.6 457 85.1
CiPaw.04G058500 Carya illinoinensis HOM05D005960 ORTHO05D007537 3.6e-221 771.5 454 84.6
Actinidia01975 Actinidia chinensis HOM05D005960 ORTHO05D007537 8.1e-221 770.4 459 85.0
CANSAT64G2728 Cannabis sativa HOM05D005960 ORTHO05D007537 2.3e-220 768.8 453 84.3
Ca_04868_v3 Cicer arietinum L. HOM05D005960 ORTHO05D007537 4.0e-220 768.1 454 83.5
vmacro05665 Vaccinium macrocarpon HOM05D005960 ORTHO05D007537 6.8e-220 767.3 456 84.4
Thecc.04G090800 Theobroma cacao HOM05D005960 ORTHO05D007537 1.5e-219 766.1 457 82.9
PGR004G2687 Punica granatum HOM05D005960 ORTHO05D007537 7.5e-219 763.8 457 84.0
QL02p039477 Quercus lobata HOM05D005960 ORTHO05D007537 1.3e-218 763.1 460 84.3
Phvul.004G033300 Phaseolus vulgaris HOM05D005960 ORTHO05D007537 2.2e-218 762.3 454 83.7
QL02p039732 Quercus lobata HOM05D005960 ORTHO05D007537 2.9e-218 761.9 460 83.9
Psat1g068640 Pisum sativum HOM05D005960 ORTHO05D007537 1.9e-217 759.2 454 82.2
Ciclev10011697m.g Citrus clementina HOM05D005960 ORTHO05D007537 2.4e-217 758.8 453 83.7
TPR.G26197 Trifolium pratense HOM05D005960 ORTHO05D007537 2.4e-217 758.8 454 82.4
ClCG11G004630 Citrullus lanatus HOM05D005960 ORTHO05D007537 3.2e-217 758.4 454 84.6
Oeu000854.1 Olea europaea HOM05D005960 ORTHO05D007537 3.2e-217 758.4 471 81.3
Duzib147G1008 Durio zibethinus HOM05D005960 ORTHO05D007537 4.1e-217 758.1 455 82.4
Hma1.2p1_3044F.1_g332080 Hydrangea macrophylla HOM05D005960 ORTHO05D007537 4.1e-217 758.1 456 84.0
Glyma.13G059000 Glycine max HOM05D005960 ORTHO05D007537 2.1e-216 755.7 454 82.8
Potri.017G090100 Populus trichocarpa HOM05D005960 ORTHO05D007537 2.1e-216 755.7 454 82.6
Lj2g0023614 Lotus japonicus HOM05D005960 ORTHO05D007537 6.0e-216 754.2 454 83.9
Aqoxy3G00406 Aquilegia oxysepala HOM05D005960 ORTHO05D007537 7.8e-216 753.8 455 82.2
Rhsim10G0047200 Rhododendron simsii HOM05D005960 ORTHO05D007537 7.8e-216 753.8 473 81.4
TWI60G0302 Tripterygium wilfordii HOM05D005960 ORTHO05D007537 7.8e-216 753.8 453 82.8
MELO3C022021.2 Cucumis melo HOM05D005960 ORTHO05D007537 3.0e-215 751.9 454 84.4
Glyma.19G027400 Glycine max HOM05D005960 ORTHO05D007537 3.0e-215 751.9 454 82.4
VMungo0464G0831 Vigna mungo HOM05D005960 ORTHO05D007537 3.0e-215 751.9 452 82.7
Medtr6g013750 Medicago truncatula HOM05D005960 ORTHO05D007537 3.9e-215 751.5 454 81.7
Gohir.A11G071600 Gossypium hirsutum HOM05D005960 ORTHO05D007537 5.1e-215 751.1 458 82.3
CsaV3_5G038400 Cucumis sativus L. HOM05D005960 ORTHO05D007537 6.6e-215 750.7 454 84.6
Gorai.007G081300 Gossypium raimondii HOM05D005960 ORTHO05D007537 1.1e-214 750.0 458 82.1
Rhsim10G0046600 Rhododendron simsii HOM05D005960 ORTHO05D007537 1.1e-214 750.0 473 81.4
MBI16_g15532_MAGBIO Magnolia biondii HOM05D005960 ORTHO05D007537 1.9e-214 749.2 454 83.0
Sabra17G0079200 Salix brachista HOM05D005960 ORTHO05D007537 1.2e-213 746.5 470 79.6
Cpa.g.sc14.144 Carica papaya HOM05D005960 ORTHO05D007537 1.6e-213 746.1 454 81.9
Sed0006667 Sechium edule HOM05D005960 ORTHO05D007537 1.1e-212 743.4 454 83.3
COL.COLO4_21375 Corchorus olitorius HOM05D005960 ORTHO05D007537 5.2e-212 741.1 454 80.8
arahy.Tifrunner.gnm1.ann1.8N3EDT Arachis hypogaea HOM05D005960 ORTHO05D007537 1.5e-211 739.6 458 82.1
Haze_14472 Corylus avellana HOM05D005960 ORTHO05D007537 1.3e-210 736.5 520 74.6
arahy.Tifrunner.gnm1.ann1.7U9LX7 Arachis hypogaea HOM05D005960 ORTHO05D007537 1.7e-210 736.1 458 81.9
Migut.H00653 Erythranthe guttata HOM05D005960 ORTHO05D007537 1.7e-210 736.1 457 80.3
AUR62042562 Chenopodium quinoa HOM05D005960 ORTHO05D007537 1.9e-209 732.6 453 81.7
THA.LOC104802965 Tarenaya hassleriana HOM05D005960 ORTHO05D007537 2.4e-209 732.3 454 80.2
EL10Ac2g03055 Beta vulgaris HOM05D005960 ORTHO05D007537 1.6e-208 729.6 452 81.2
HanXRQChr14g0448721 Helianthus annuus HOM05D005960 ORTHO05D007537 2.3e-207 725.7 453 80.6
Lalb_Chr06g0175111 Lupinus albus HOM05D005960 ORTHO05D007537 3.0e-207 725.3 461 79.0
DCAR_005553 Daucus carota HOM05D005960 ORTHO05D007537 3.3e-206 721.8 433 83.4
PSO013G0364 Papaver somniferum HOM05D005960 ORTHO05D007537 1.1e-204 716.8 458 79.3
CAN.G734.6 Capsicum annuum HOM05D005960 ORTHO05D007537 2.4e-204 715.7 457 79.2
Thhalv10020707m.g Eutrema salsugineum HOM05D005960 ORTHO05D007537 2.4e-204 715.7 457 79.6
AT3G01060 Arabidopsis thaliana HOM05D005960 ORTHO05D007537 1.2e-203 713.4 457 78.8
ECA238G1943 Erigeron canadensis HOM05D005960 ORTHO05D007537 3.4e-203 711.8 437 81.2
PSO421G0059 Papaver somniferum HOM05D005960 ORTHO05D007537 3.4e-203 711.8 456 78.9
AL3G11200 Arabidopsis lyrata HOM05D005960 ORTHO05D007537 1.3e-202 709.9 459 78.2
Sp3g01070 Schrenkiella parvula HOM05D005960 ORTHO05D007537 1.3e-202 709.9 458 78.8
Os05g0512200 Oryza sativa ssp. japonica HOM05D005960 ORTHO05D007537 2.2e-202 709.1 403 85.9
Sopen03g016610 Solanum pennellii HOM05D005960 ORTHO05D007537 2.2e-202 709.1 424 83.7
Solyc03g013240.4 Solanum lycopersicum HOM05D005960 ORTHO05D007537 6.4e-202 707.6 424 83.7
Carub.0003s0111 Capsella rubella HOM05D005960 ORTHO05D007537 1.9e-201 706.1 457 77.9
CARHR076010 Cardamine hirsuta HOM05D005960 ORTHO05D007537 1.9e-201 706.1 457 78.6
Aa31LG5G12560 Aethionema arabicum HOM05D005960 ORTHO05D007537 9.3e-201 703.7 457 79.0
BNapus_Darmor_BZH_scaffold_97p00050 Brassica napus HOM05D005960 ORTHO05D007537 2.1e-200 702.6 456 79.6
FAN02G1813 Fragaria x ananassa HOM05D005960 ORTHO05D007537 2.7e-200 702.2 357 97.8
BolC1t05923H Brassica oleracea HOM05D005960 ORTHO05D007537 6.0e-200 701.0 456 79.2
BNapus_Darmor_BZH_scaffold_113p00110 Brassica napus HOM05D005960 ORTHO05D007537 1.1e-198 696.8 457 78.6
BraA01t04634Z Brassica rapa HOM05D005960 ORTHO05D007537 4.3e-198 694.9 457 78.3
Lj4C116G4 Lonicera japonica HOM05D005960 ORTHO05D007537 1.4e-196 689.9 464 77.4
Peaxi162Scf00451g00429 Petunia axillaris HOM05D005960 ORTHO05D007537 4.0e-196 688.3 457 78.1
Lsat_1_v5_gn_2_87860 Lactuca sativa HOM05D005960 ORTHO05D007537 9.0e-196 687.2 459 77.6
SalBow1G6551 Salvia bowleyana HOM05D005960 ORTHO05D007537 9.9e-195 683.7 471 76.2
ATR0111G015 Amborella trichopoda HOM05D005960 ORTHO05D007537 1.3e-194 683.3 448 77.0
Nn4g23343 Nelumbo nucifera HOM05D005960 ORTHO05D007537 1.4e-193 679.9 362 92.0
unitig_736.g22244 Utricularia gibba HOM05D005960 ORTHO05D007537 3.5e-192 675.2 394 83.5
Dinv33810 Davidia involucrata HOM05D005960 ORTHO05D007537 7.9e-192 674.1 454 78.0
Nitab4.5_0001637g0110 Nicotiana tabacum HOM05D005960 ORTHO05D007537 3.1e-188 662.1 459 75.6
BcaC09g47681 Brassica carinata HOM05D005960 ORTHO05D007537 5.1e-183 644.8 456 74.6
Prupe.3G258900 Prunus persica HOM05D005960 ORTHO05D007537 5.6e-182 641.3 332 94.6
Sc10g0003290 Simmondsia chinensis HOM05D005960 ORTHO05D007537 2.8e-181 639.0 358 86.6
SEGI_05647 Sequoiadendron giganteum HOM05D005960 ORTHO05D007537 1.1e-177 627.1 456 68.4
Gohir.D11G075600 Gossypium hirsutum HOM05D005960 ORTHO05D007537 6.9e-172 607.8 332 88.9
Mapoly0015s0039 Marchantia polymorpha HOM05D005960 ORTHO05D007537 7.7e-163 577.8 408 69.9
SMO335G0027 Selaginella moellendorffii HOM05D005960 ORTHO05D007537 8.5e-162 574.3 383 73.4
Nitab4.5_0005196g0010 Nicotiana tabacum HOM05D005960 ORTHO05D007537 3.6e-160 568.9 454 67.8
Pp3c2_13280 Physcomitrium patens HOM05D005960 ORTHO05D007537 1.4e-159 567.0 381 70.3
AUR62018147 Chenopodium quinoa HOM05D005960 ORTHO05D007537 7.4e-158 561.2 355 79.7
Actinidia01967 Actinidia chinensis HOM05D005960 ORTHO05D007537 1.3e-157 560.5 417 72.4
Cc07_g03890 Coffea canephora HOM05D005960 ORTHO05D007537 4.8e-157 558.5 357 80.7
AagrBONN_evm.TU.Sc2ySwM_362.2259 Anthoceros agrestis HOM05D005960 ORTHO05D007537 5.5e-153 545.0 387 67.2
Zm00001eb292620 Zea mays HOM05D005960 ORTHO05D007537 2.3e-151 539.7 287 90.2
FAN09G3416 Fragaria x ananassa HOM05D005960 ORTHO05D007537 6.5e-146 521.5 441 65.5
MSTRG.3021 Avicennia marina HOM05D005960 ORTHO05D007537 6.7e-143 511.5 279 89.6
HPP92_018459 Vanilla planifolia HOM05D005960 ORTHO05D007537 5.0e-138 495.4 307 79.8
Dinv11487 Davidia involucrata HOM05D005960 ORTHO05D007537 1.5e-137 493.8 314 80.3
CBR_g61504 Chara braunii HOM05D005960 ORTHO05D007537 1.2e-136 490.7 414 60.1
CDE07G2056 Ceratophyllum demersum HOM05D005960 ORTHO05D007537 6.6e-130 468.4 317 73.2
CDE04G1831 Ceratophyllum demersum HOM05D005960 ORTHO05D007537 8.6e-130 468.0 414 62.3
TAR627G0454 Trochodendron aralioides HOM05D005960 ORTHO05D007537 3.3e-129 466.1 332 72.6
Hma1.2p1_1813F.1_g303790 Hydrangea macrophylla HOM05D005960 ORTHO05D007537 1.7e-125 453.8 235 91.9
Hma1.2p1_3044F.1_g332082 Hydrangea macrophylla HOM05D005960 ORTHO05D007537 1.7e-125 453.8 235 91.9
Cre13.g562750 Chlamydomonas reinhardtii HOM05D005960 ORTHO05D007537 5.2e-111 405.6 409 49.9
MD09G1061300 Malus domestica HOM05D005960 ORTHO05D007537 6.6e-98 362.1 242 78.9
MCO03G230 Micromonas commoda HOM05D005960 ORTHO05D007537 2.4e-76 290.4 318 47.2
MCO05G128 Micromonas commoda HOM05D005960 ORTHO05D007537 6.9e-63 245.7 337 43.0
PRCOL_00002980 Prasinoderma coloniale HOM05D005960 ORTHO05D007537 1.1e-57 228.4 402 36.8
PRCOL_00004151 Prasinoderma coloniale HOM05D005960 ORTHO05D007537 7.7e-54 215.7 380 37.4
CDE07G0145 Ceratophyllum demersum HOM05D005960 ORTHO05D007537 3.0e-50 203.8 117 86.3
TPR.G22619 Trifolium pratense HOM05D005960 ORTHO05D007537 6.7e-50 202.6 149 67.1
PRCOL_00003347 Prasinoderma coloniale HOM05D005960 ORTHO05D007537 1.1e-49 201.8 341 36.4
Cc07_g03900 Coffea canephora HOM05D005960 ORTHO05D007537 1.0e-45 188.7 102 88.2
MCO08G069 Micromonas commoda HOM05D005960 ORTHO05D007537 1.0e-45 188.7 349 34.7
Potri.004G125301 Populus trichocarpa HOM05D005960 ORTHO05D007537 1.1e-44 185.3 145 63.4
AUR62018149 Chenopodium quinoa HOM05D005960 ORTHO05D007537 1.2e-43 181.8 100 89.0
MCO08G121 Micromonas commoda HOM05D005960 ORTHO05D007537 7.9e-43 179.1 362 32.0
EL10Ac2g03064 Beta vulgaris HOM05D005960 ORTHO05D007537 1.0e-37 162.2 96 84.4
MD09G1061200 Malus domestica HOM05D005960 ORTHO05D007537 1.2e-25 122.1 92 67.4
Oeu061493.1 Olea europaea HOM05D005960 ORTHO05D007537 2.5e-20 104.4 51 86.3
PGSC0003DMG400033541 Solanum tuberosum HOM05D005960 ORTHO05D007537 3.1e-15 87.4 45 100.0
MCO08G023 Micromonas commoda HOM05D005960 ORTHO05D270145 8.9e-10 69.3 169 29.0
Zm00001eb030310 Zea mays HOM05D005960 ORTHO05D051632 3.7e-08 63.9 38 84.2
Zm00001eb250570 Zea mays HOM05D005960 ORTHO05D051632 8.3e-08 62.8 42 76.2


User provided reference genes

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