Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0166491 Rosa chinensis HOM05D006982 ORTHO05D008909 1.1e-92 343.2 169 100.0
FvH4_6g47420 Fragaria vesca HOM05D006982 ORTHO05D008909 1.6e-86 322.8 169 94.1
FAN14G3321 Fragaria x ananassa HOM05D006982 ORTHO05D008909 1.6e-86 322.8 169 94.1
RcHm_v2.0_Chr2g0166501 Rosa chinensis HOM05D006982 ORTHO05D008909 2.1e-86 322.4 168 93.5
FAN09G4389 Fragaria x ananassa HOM05D006982 ORTHO05D008909 2.3e-85 318.9 169 92.3
FAN02G3418 Fragaria x ananassa HOM05D006982 ORTHO05D008909 4.3e-84 314.7 169 91.1
MD09G1061600 Malus domestica HOM05D006982 ORTHO05D008909 1.2e-73 280.0 171 80.7
Prupe.3G258600 Prunus persica HOM05D006982 ORTHO05D008909 2.1e-70 269.2 181 75.1
Duzib187G0332 Durio zibethinus HOM05D006982 ORTHO05D008909 1.3e-67 260.0 168 76.2
Thecc.04G091200 Theobroma cacao HOM05D006982 ORTHO05D008909 3.7e-67 258.5 172 75.0
CANSAT64G0008 Cannabis sativa HOM05D006982 ORTHO05D008909 4.8e-67 258.1 159 78.6
Atru.chr8.390 Acer truncatum HOM05D006982 ORTHO05D008909 3.1e-66 255.4 155 79.4
Manes.01G098700 Manihot esculenta HOM05D006982 ORTHO05D008909 5.3e-66 254.6 172 73.8
Haze_14468 Corylus avellana HOM05D006982 ORTHO05D008909 3.5e-65 251.9 170 72.9
Thhalv10005014m.g Eutrema salsugineum HOM05D006982 ORTHO05D008909 4.5e-65 251.5 171 71.9
Dinv11484 Davidia involucrata HOM05D006982 ORTHO05D008909 5.9e-65 251.1 171 72.5
Sp2g17880 Schrenkiella parvula HOM05D006982 ORTHO05D008909 1.0e-64 250.4 171 72.5
AL5G19280 Arabidopsis lyrata HOM05D006982 ORTHO05D008909 1.7e-64 249.6 174 70.1
AT3G29280 Arabidopsis thaliana HOM05D006982 ORTHO05D008909 1.7e-64 249.6 175 70.3
A06p40000 Brassica napus HOM05D006982 ORTHO05D008909 2.2e-64 249.2 161 73.3
Carub.0005s0799 Capsella rubella HOM05D006982 ORTHO05D008909 2.9e-64 248.8 174 70.7
Hma1.2p1_1813F.1_g303760 Hydrangea macrophylla HOM05D006982 ORTHO05D008909 3.8e-64 248.4 167 72.5
Rhsim10G0045300 Rhododendron simsii HOM05D006982 ORTHO05D008909 5.0e-64 248.1 165 72.7
Aa31LG2G3980 Aethionema arabicum HOM05D006982 ORTHO05D008909 6.5e-64 247.7 168 73.2
CiPaw.03G091200 Carya illinoinensis HOM05D006982 ORTHO05D008909 8.5e-64 247.3 166 74.1
Hma1.2p1_3044F.1_g332060 Hydrangea macrophylla HOM05D006982 ORTHO05D008909 1.1e-63 246.9 167 71.9
BcaB07g30087 Brassica carinata HOM05D006982 ORTHO05D008909 1.4e-63 246.5 173 71.1
Potri.017G090400 Populus trichocarpa HOM05D006982 ORTHO05D008909 1.9e-63 246.1 176 72.2
A02p36510 Brassica napus HOM05D006982 ORTHO05D008909 2.5e-63 245.7 163 73.0
C02p55480 Brassica napus HOM05D006982 ORTHO05D008909 2.5e-63 245.7 170 71.2
BraA02t08647Z Brassica rapa HOM05D006982 ORTHO05D008909 2.5e-63 245.7 163 73.0
GSVIVG01011493001 Vitis vinifera HOM05D006982 ORTHO05D008909 2.5e-63 245.7 168 72.0
BolC2t11604H Brassica oleracea HOM05D006982 ORTHO05D008909 3.2e-63 245.4 164 73.2
Gohir.D09G010400 Gossypium hirsutum HOM05D006982 ORTHO05D008909 4.2e-63 245.0 166 73.5
BcaC03g17569 Brassica carinata HOM05D006982 ORTHO05D008909 5.5e-63 244.6 171 71.3
vmacro05662 Vaccinium macrocarpon HOM05D006982 ORTHO05D008909 5.5e-63 244.6 165 71.5
Cc07_g04010 Coffea canephora HOM05D006982 ORTHO05D008909 1.2e-62 243.4 166 71.1
Gorai.006G012000 Gossypium raimondii HOM05D006982 ORTHO05D008909 1.2e-62 243.4 165 73.3
Sc11g0004740 Simmondsia chinensis HOM05D006982 ORTHO05D008909 1.2e-62 243.4 156 75.0
TWI60G0050 Tripterygium wilfordii HOM05D006982 ORTHO05D008909 1.2e-62 243.4 169 72.8
TAR629G3328 Trochodendron aralioides HOM05D006982 ORTHO05D008909 1.2e-62 243.4 161 70.2
Nn4g23351 Nelumbo nucifera HOM05D006982 ORTHO05D008909 1.6e-62 243.0 155 71.6
QL02p039506 Quercus lobata HOM05D006982 ORTHO05D008909 1.6e-62 243.0 172 72.1
MSTRG.3019 Avicennia marina HOM05D006982 ORTHO05D008909 2.1e-62 242.7 167 68.9
Nitab4.5_0005196g0040 Nicotiana tabacum HOM05D006982 ORTHO05D008909 2.1e-62 242.7 160 73.8
Eucgr.I01983 Eucalyptus grandis HOM05D006982 ORTHO05D008909 6.1e-62 241.1 166 68.7
CARHR292480 Cardamine hirsuta HOM05D006982 ORTHO05D008909 8.0e-62 240.7 166 69.9
Ciclev10012958m.g Citrus clementina HOM05D006982 ORTHO05D008909 1.4e-61 240.0 159 74.8
ECA238G0675 Erigeron canadensis HOM05D006982 ORTHO05D008909 1.4e-61 240.0 166 69.3
ClCG05G014130 Citrullus lanatus HOM05D006982 ORTHO05D008909 3.0e-61 238.8 154 73.4
HanXRQChr07g0199461 Helianthus annuus HOM05D006982 ORTHO05D008909 3.0e-61 238.8 150 74.7
Nitab4.5_0001637g0060 Nicotiana tabacum HOM05D006982 ORTHO05D008909 3.0e-61 238.8 163 72.4
Lj2g0023544 Lotus japonicus HOM05D006982 ORTHO05D008909 5.2e-61 238.0 169 67.5
CsaV3_3G026330 Cucumis sativus L. HOM05D006982 ORTHO05D008909 6.7e-61 237.7 154 73.4
MELO3C014935.2 Cucumis melo HOM05D006982 ORTHO05D008909 8.8e-61 237.3 154 73.4
Glyma.13G058700 Glycine max HOM05D006982 ORTHO05D008909 8.8e-61 237.3 166 69.9
THA.LOC104805498 Tarenaya hassleriana HOM05D006982 ORTHO05D008909 1.1e-60 236.9 164 67.1
Migut.H00650 Erythranthe guttata HOM05D006982 ORTHO05D008909 1.5e-60 236.5 169 70.4
Phvul.004G033900 Phaseolus vulgaris HOM05D006982 ORTHO05D008909 1.5e-60 236.5 167 70.1
SGA_v2.0_scaffold4G02409 Striga asiatica HOM05D006982 ORTHO05D008909 1.5e-60 236.5 167 65.3
SalBow1G5236 Salvia bowleyana HOM05D006982 ORTHO05D008909 2.0e-60 236.1 160 69.4
BolC7t44339H Brassica oleracea HOM05D006982 ORTHO05D008909 3.3e-60 235.3 168 67.9
VMungo0464G0061 Vigna mungo HOM05D006982 ORTHO05D008909 4.4e-60 235.0 167 68.9
Sed0004734 Sechium edule HOM05D006982 ORTHO05D008909 5.7e-60 234.6 154 74.0
Lsat_1_v5_gn_2_87800 Lactuca sativa HOM05D006982 ORTHO05D008909 3.7e-59 231.9 153 71.9
Lalb_Chr02g0159031 Lupinus albus HOM05D006982 ORTHO05D008909 6.3e-59 231.1 159 69.8
Os03g0257000 Oryza sativa ssp. japonica HOM05D006982 ORTHO05D008909 6.3e-59 231.1 161 64.6
TPR.G26172 Trifolium pratense HOM05D006982 ORTHO05D008909 8.2e-59 230.7 163 66.9
Glyma.19G027800 Glycine max HOM05D006982 ORTHO05D008909 1.8e-58 229.6 167 68.9
PSO017G1487 Papaver somniferum HOM05D006982 ORTHO05D008909 1.8e-58 229.6 156 73.1
Sopen03g016600 Solanum pennellii HOM05D006982 ORTHO05D008909 1.8e-58 229.6 154 70.8
CAN.G734.5 Capsicum annuum HOM05D006982 ORTHO05D008909 2.4e-58 229.2 161 70.2
PGR004G0184 Punica granatum HOM05D006982 ORTHO05D008909 3.1e-58 228.8 171 64.9
Zm00001eb011170 Zea mays HOM05D006982 ORTHO05D008909 3.1e-58 228.8 156 67.3
Psat1g070160 Pisum sativum HOM05D006982 ORTHO05D008909 4.1e-58 228.4 167 66.5
Solyc03g013250.4 Solanum lycopersicum HOM05D006982 ORTHO05D008909 4.1e-58 228.4 154 70.1
Os03g0209700 Oryza sativa ssp. japonica HOM05D006982 ORTHO05D008909 7.0e-58 227.6 171 63.7
BraA06t26915Z Brassica rapa HOM05D006982 ORTHO05D008909 1.6e-57 226.5 144 74.3
PSO478G0313 Papaver somniferum HOM05D006982 ORTHO05D008909 1.6e-57 226.5 156 71.8
AUR62042567 Chenopodium quinoa HOM05D006982 ORTHO05D008909 2.0e-57 226.1 168 64.9
ATR0064G116 Amborella trichopoda HOM05D006982 ORTHO05D008909 5.9e-57 224.6 154 70.8
EL10Ac2g03084 Beta vulgaris HOM05D006982 ORTHO05D008909 1.7e-56 223.0 168 63.1
Sabra17G0079600 Salix brachista HOM05D006982 ORTHO05D008909 1.7e-56 223.0 217 56.7
Aqoxy3G00454 Aquilegia oxysepala HOM05D006982 ORTHO05D008909 5.0e-56 221.5 154 69.5
Actinidia07827 Actinidia chinensis HOM05D006982 ORTHO05D008909 5.5e-55 218.0 151 68.2
Cpa.g.sc14.148 Carica papaya HOM05D006982 ORTHO05D008909 2.7e-54 215.7 155 69.7
Gohir.A09G011401 Gossypium hirsutum HOM05D006982 ORTHO05D008909 4.5e-49 198.4 188 60.6
Hund13166 Selenicereus undatus HOM05D006982 ORTHO05D008909 5.9e-49 198.0 165 64.2
COL.COLO4_21380 Corchorus olitorius HOM05D006982 ORTHO05D008909 1.7e-48 196.4 118 77.1
Lj4A116T80 Lonicera japonica HOM05D006982 ORTHO05D008909 3.6e-46 188.7 118 74.6
SEGI_41437 Sequoiadendron giganteum HOM05D006982 ORTHO05D008909 3.6e-46 188.7 155 57.4
CDE04G2259 Ceratophyllum demersum HOM05D006982 ORTHO05D008909 2.0e-44 183.0 127 67.7
FAN05G3993 Fragaria x ananassa HOM05D006982 ORTHO05D008909 3.4e-44 182.2 101 90.1
BolC2t11598H Brassica oleracea HOM05D006982 ORTHO05D008909 4.4e-44 181.8 129 66.7
Medtr6g013815 Medicago truncatula HOM05D006982 ORTHO05D008909 2.8e-43 179.1 119 66.4
SMO164G0193 Selaginella moellendorffii HOM05D006982 ORTHO05D008909 7.0e-42 174.5 153 54.9
Peaxi162Scf00451g00425 Petunia axillaris HOM05D006982 ORTHO05D008909 1.2e-41 173.7 156 59.6
Pp3c21_18720 Physcomitrium patens HOM05D006982 ORTHO05D008909 7.7e-41 171.0 158 53.2
unitig_899.g15159 Utricularia gibba HOM05D006982 ORTHO05D008909 1.3e-40 170.2 154 59.7
Ah.10g031970 Amaranthus hybridus HOM05D006982 ORTHO05D008909 3.3e-39 165.6 168 52.4
arahy.Tifrunner.gnm1.ann1.NGZQ86 Arachis hypogaea HOM05D006982 ORTHO05D008909 3.5e-33 145.6 158 51.9
arahy.Tifrunner.gnm1.ann1.84WVAW Arachis hypogaea HOM05D006982 ORTHO05D008909 5.0e-32 141.7 156 50.6
C07p38170 Brassica napus HOM05D006982 ORTHO05D008909 1.5e-31 140.2 96 64.6
SHI03750 Sapria himalayana HOM05D000002 ORTHO05D000001 2.6e-28 129.4 91 61.5
CSS0035536 Camellia sinensis var. sinensis HOM05D006982 ORTHO05D008909 6.4e-27 124.8 76 72.4
C02p55410 Brassica napus HOM05D006982 ORTHO05D008909 2.0e-25 119.8 111 56.8
TPR.G3955 Trifolium pratense HOM05D006982 ORTHO05D008909 8.3e-19 97.8 69 72.5
AUR62018155 Chenopodium quinoa HOM05D006982 ORTHO05D008909 3.2e-10 69.3 50 60.0
CSS0038093 Camellia sinensis var. sinensis HOM05D006982 ORTHO05D008909 1.3e-08 63.9 44 72.7
PGSC0003DMG400033554 Solanum tuberosum HOM05D006982 ORTHO05D008909 6.6e-08 61.6 43 67.4
AUR62006323 Chenopodium quinoa HOM05D003441 ORTHO05D044017 1.2e-06 57.4 78 46.2
Medtr6g013805 Medicago truncatula HOM05D006982 ORTHO05D008909 3.6e-06 55.8 52 59.6


User provided reference genes

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