Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0165971 Rosa chinensis HOM05D000027 ORTHO05D000671 3.1e-36 154.5 70 100.0
RcHm_v2.0_Chr2g0166011 Rosa chinensis HOM05D000027 ORTHO05D000671 7.2e-17 90.1 47 89.4
FvH4_6g46980 Fragaria vesca HOM05D000027 ORTHO05D000671 2.3e-15 85.1 47 83.0
FAN14G5534 Fragaria x ananassa HOM05D000027 ORTHO05D000671 2.3e-15 85.1 47 83.0
FAN02G1787 Fragaria x ananassa HOM05D000027 ORTHO05D000671 4.4e-14 80.9 47 78.7
Prupe.3G256100 Prunus persica HOM05D000027 ORTHO05D000671 3.1e-12 74.7 58 62.1
ClCG11G004720 Citrullus lanatus HOM05D000027 ORTHO05D000671 7.7e-11 70.1 57 57.9
Manes.02G054100 Manihot esculenta HOM05D000027 ORTHO05D000671 2.2e-10 68.6 47 66.0
FAN09G3735 Fragaria x ananassa HOM05D000027 ORTHO05D000671 2.9e-10 68.2 54 59.3
MD17G1058100 Malus domestica HOM05D000027 ORTHO05D000671 5.0e-10 67.4 49 63.3
MD17G1058200 Malus domestica HOM05D000027 ORTHO05D000671 5.0e-10 67.4 49 63.3
Oeu003194.1 Olea europaea HOM05D000027 ORTHO05D000671 5.0e-10 67.4 43 72.1
Oeu003197.1 Olea europaea HOM05D000027 ORTHO05D000671 5.0e-10 67.4 43 72.1
Prupe.3G256000 Prunus persica HOM05D000027 ORTHO05D000671 6.5e-10 67.0 58 55.2
CSS0040900 Camellia sinensis var. sinensis HOM05D000027 ORTHO05D000671 8.5e-10 66.6 43 67.4
MD09G1064700 Malus domestica HOM05D000027 ORTHO05D000671 8.5e-10 66.6 43 69.8
Prupe.3G256200 Prunus persica HOM05D000027 ORTHO05D000671 8.5e-10 66.6 58 58.6
CsaV3_5G038490 Cucumis sativus L. HOM05D000027 ORTHO05D000671 1.5e-09 65.9 57 54.4
Dinv00865 Davidia involucrata HOM05D000027 ORTHO05D000671 1.5e-09 65.9 47 63.8
Dinv34952 Davidia involucrata HOM05D000027 ORTHO05D000671 1.5e-09 65.9 47 63.8
MD09G1064800 Malus domestica HOM05D000027 ORTHO05D000671 1.9e-09 65.5 44 65.9
MD09G1064900 Malus domestica HOM05D000027 ORTHO05D000671 2.5e-09 65.1 47 66.0
Oeu031615.1 Olea europaea HOM05D000027 ORTHO05D000671 2.5e-09 65.1 43 72.1
MELO3C022031.2 Cucumis melo HOM05D000027 ORTHO05D000671 3.2e-09 64.7 57 52.6
Dinv34951 Davidia involucrata HOM05D000027 ORTHO05D000671 3.2e-09 64.7 47 63.8
FAN02G1420 Fragaria x ananassa HOM05D000027 ORTHO05D000671 3.2e-09 64.7 44 68.2
Ciclev10000944m.g Citrus clementina HOM05D000027 ORTHO05D000671 4.2e-09 64.3 53 56.6
Dinv00863 Davidia involucrata HOM05D000027 ORTHO05D000671 4.2e-09 64.3 47 61.7
Oeu003191.2 Olea europaea HOM05D000027 ORTHO05D000671 4.2e-09 64.3 43 69.8
Actinidia26250 Actinidia chinensis HOM05D000027 ORTHO05D000671 5.5e-09 63.9 43 67.4
Cc10_g14860 Coffea canephora HOM05D000027 ORTHO05D000671 5.5e-09 63.9 53 56.6
Sed0005991 Sechium edule HOM05D000027 ORTHO05D000671 7.2e-09 63.5 57 52.6
CSS0029346 Camellia sinensis var. sinensis HOM05D000027 ORTHO05D000671 9.4e-09 63.2 47 57.4
CsaV3_5G038480 Cucumis sativus L. HOM05D000027 ORTHO05D000671 9.4e-09 63.2 57 52.6
Dinv00864 Davidia involucrata HOM05D000027 ORTHO05D000671 9.4e-09 63.2 49 59.2
Oeu031620.1 Olea europaea HOM05D000027 ORTHO05D000671 9.4e-09 63.2 42 73.8
arahy.Tifrunner.gnm1.ann1.RJP84F Arachis hypogaea HOM05D000027 ORTHO05D000671 1.2e-08 62.8 44 61.4
Prupe.3G256300 Prunus persica HOM05D000027 ORTHO05D000671 1.6e-08 62.4 43 65.1
arahy.Tifrunner.gnm1.ann1.DV26TN Arachis hypogaea HOM05D000027 ORTHO05D000671 2.1e-08 62.0 43 62.8
CSS0033519 Camellia sinensis var. sinensis HOM05D000027 ORTHO05D000671 2.1e-08 62.0 43 62.8
Cc00_g18690 Coffea canephora HOM05D000027 ORTHO05D000671 2.1e-08 62.0 51 56.9
Cc02_g31930 Coffea canephora HOM05D000027 ORTHO05D000671 2.1e-08 62.0 43 65.1
Glyma.19G029500 Glycine max HOM05D000027 ORTHO05D000671 2.1e-08 62.0 43 65.1
Lsat_1_v5_gn_4_171601 Lactuca sativa HOM05D000027 ORTHO05D000671 2.1e-08 62.0 43 60.5
RcHm_v2.0_Chr2g0166001 Rosa chinensis HOM05D000027 ORTHO05D000671 2.1e-08 62.0 43 67.4
GSVIVG01032926001 Vitis vinifera HOM05D000027 ORTHO05D000671 2.1e-08 62.0 43 62.8
Rhsim10G0043200 Rhododendron simsii HOM05D000027 ORTHO05D000671 2.7e-08 61.6 45 60.0
FvH4_6g46990 Fragaria vesca HOM05D000027 ORTHO05D000671 3.6e-08 61.2 43 65.1
arahy.Tifrunner.gnm1.ann1.FPT8AU Arachis hypogaea HOM05D000027 ORTHO05D000671 4.7e-08 60.8 43 62.8
Cc11_g05570 Coffea canephora HOM05D000027 ORTHO05D000671 4.7e-08 60.8 51 56.9
Hma1.2p1_0481F.1_g162080 Hydrangea macrophylla HOM05D000027 ORTHO05D000671 4.7e-08 60.8 47 57.4
Lalb_Chr10g0093031 Lupinus albus HOM05D000027 ORTHO05D000671 4.7e-08 60.8 49 61.2
RcHm_v2.0_Chr2g0166041 Rosa chinensis HOM05D000027 ORTHO05D000671 4.7e-08 60.8 44 63.6
Dinv35824 Davidia involucrata HOM05D000027 ORTHO05D000671 8.0e-08 60.1 43 62.8
FvH4_6g47000 Fragaria vesca HOM05D000027 ORTHO05D000671 8.0e-08 60.1 59 55.9
Lju41A4T67 Lonicera japonica HOM05D000027 ORTHO05D000671 8.0e-08 60.1 43 62.8
MD09G1065000 Malus domestica HOM05D000027 ORTHO05D000671 8.0e-08 60.1 42 64.3
Oeu042758.2 Olea europaea HOM05D000027 ORTHO05D000671 8.0e-08 60.1 44 65.9
Aqoxy3G03606 Aquilegia oxysepala HOM05D000027 ORTHO05D000671 1.0e-07 59.7 43 58.1
Cc00_g21850 Coffea canephora HOM05D000027 ORTHO05D000671 1.0e-07 59.7 43 60.5
MELO3C022029.2 Cucumis melo HOM05D000027 ORTHO05D000671 1.0e-07 59.7 57 54.4
GSVIVG01032930001 Vitis vinifera HOM05D000027 ORTHO05D000671 1.0e-07 59.7 43 58.1
Aqoxy3G03608 Aquilegia oxysepala HOM05D000027 ORTHO05D000671 1.4e-07 59.3 44 63.6
arahy.Tifrunner.gnm1.ann1.0M4QFL Arachis hypogaea HOM05D000027 ORTHO05D000671 1.4e-07 59.3 44 61.4
Phvul.004G035500 Phaseolus vulgaris HOM05D000027 ORTHO05D000671 1.4e-07 59.3 43 62.8
RcHm_v2.0_Chr2g0165961 Rosa chinensis HOM05D000027 ORTHO05D000671 1.4e-07 59.3 43 60.5
Nitab4.5_0006731g0030 Nicotiana tabacum HOM05D000027 ORTHO05D000671 1.8e-07 58.9 47 55.3
arahy.Tifrunner.gnm1.ann1.JA6J2D Arachis hypogaea HOM05D000027 ORTHO05D000671 2.3e-07 58.5 43 55.8
arahy.Tifrunner.gnm1.ann1.PJFM9Q Arachis hypogaea HOM05D000027 ORTHO05D000671 3.0e-07 58.2 43 58.1
Gohir.A09G010000 Gossypium hirsutum HOM05D000027 ORTHO05D000671 3.0e-07 58.2 55 50.9
MD17G1058400 Malus domestica HOM05D000027 ORTHO05D000671 3.0e-07 58.2 47 59.6
Nitab4.5_0006731g0010 Nicotiana tabacum HOM05D000027 ORTHO05D000671 3.0e-07 58.2 47 55.3
Oeu031621.1 Olea europaea HOM05D000027 ORTHO05D000671 3.0e-07 58.2 41 68.3
Rhsim10G0043100 Rhododendron simsii HOM05D000027 ORTHO05D000671 3.0e-07 58.2 45 60.0
Solyc02g088750.2 Solanum lycopersicum HOM05D000027 ORTHO05D000671 3.0e-07 58.2 47 55.3
Sopen02g033460 Solanum pennellii HOM05D000027 ORTHO05D000671 3.0e-07 58.2 47 55.3
arahy.Tifrunner.gnm1.ann1.0KX0W6 Arachis hypogaea HOM05D000027 ORTHO05D000671 4.0e-07 57.8 43 55.8
arahy.Tifrunner.gnm1.ann1.5MLS64 Arachis hypogaea HOM05D000027 ORTHO05D000671 4.0e-07 57.8 43 55.8
Ciclev10013686m.g Citrus clementina HOM05D000027 ORTHO05D000671 4.0e-07 57.8 43 48.8
HanXRQChr17g0551731 Helianthus annuus HOM05D000027 ORTHO05D000671 4.0e-07 57.8 46 50.0
VMungo1383G2659 Vigna mungo HOM05D000027 ORTHO05D000671 4.0e-07 57.8 44 59.1
arahy.Tifrunner.gnm1.ann1.T86JB7 Arachis hypogaea HOM05D000027 ORTHO05D000671 5.2e-07 57.4 43 58.1
CSS0031621 Camellia sinensis var. sinensis HOM05D000027 ORTHO05D000671 5.2e-07 57.4 42 61.9
Hma1.2p1_0114F.1_g055550 Hydrangea macrophylla HOM05D000027 ORTHO05D000671 5.2e-07 57.4 42 59.5
Lj4A118T60 Lonicera japonica HOM05D000027 ORTHO05D000671 5.2e-07 57.4 47 55.3
arahy.Tifrunner.gnm1.ann1.AR931D Arachis hypogaea HOM05D000027 ORTHO05D000671 6.7e-07 57.0 43 53.5
Ciclev10000928m.g Citrus clementina HOM05D000027 ORTHO05D000671 6.7e-07 57.0 47 53.2
Eucgr.K02512 Eucalyptus grandis HOM05D000027 ORTHO05D000671 6.7e-07 57.0 43 55.8
Oeu051012.1 Olea europaea HOM05D000027 ORTHO05D000671 6.7e-07 57.0 42 64.3
GSVIVG01032927001 Vitis vinifera HOM05D000027 ORTHO05D000671 6.7e-07 57.0 49 53.1
Cpa.g.c41702 Carica papaya HOM05D000027 ORTHO05D000671 8.8e-07 56.6 43 60.5
Cc02_g31950 Coffea canephora HOM05D000027 ORTHO05D000671 8.8e-07 56.6 43 58.1
Peaxi162Scf00166g00527 Petunia axillaris HOM05D000027 ORTHO05D000671 8.8e-07 56.6 47 53.2
TAR622G1266 Trochodendron aralioides HOM05D000027 ORTHO05D000671 8.8e-07 56.6 45 53.3
arahy.Tifrunner.gnm1.ann1.S6ID14 Arachis hypogaea HOM05D000027 ORTHO05D000671 1.2e-06 56.2 43 53.5
Ciclev10001071m.g Citrus clementina HOM05D000027 ORTHO05D000671 1.2e-06 56.2 49 53.1
Gohir.D09G009100 Gossypium hirsutum HOM05D000027 ORTHO05D000671 1.2e-06 56.2 43 58.1
Oeu031619.3 Olea europaea HOM05D000027 ORTHO05D000671 1.2e-06 56.2 42 59.5
Oeu051007.1 Olea europaea HOM05D000027 ORTHO05D000671 1.2e-06 56.2 42 61.9
Potri.004G123500 Populus trichocarpa HOM05D000027 ORTHO05D000671 1.2e-06 56.2 43 53.5
QL10p019008 Quercus lobata HOM05D000027 ORTHO05D000671 1.2e-06 56.2 43 60.5
arahy.Tifrunner.gnm1.ann1.L0QN5H Arachis hypogaea HOM05D000027 ORTHO05D000671 1.5e-06 55.8 43 55.8
arahy.Tifrunner.gnm1.ann1.W1N7QF Arachis hypogaea HOM05D000027 ORTHO05D000671 1.5e-06 55.8 43 55.8
FAN02G2675 Fragaria x ananassa HOM05D000027 ORTHO05D000671 1.5e-06 55.8 58 53.4
Glyma.19G029700 Glycine max HOM05D000027 ORTHO05D000671 1.5e-06 55.8 43 58.1
Lsat_1_v5_gn_4_171540 Lactuca sativa HOM05D000027 ORTHO05D000671 1.5e-06 55.8 43 51.2
MD09G1065400 Malus domestica HOM05D000027 ORTHO05D000671 1.5e-06 55.8 57 47.4
Eucgr.K02515 Eucalyptus grandis HOM05D000027 ORTHO05D000671 2.0e-06 55.5 43 53.5
Manes.02G054300 Manihot esculenta HOM05D000027 ORTHO05D000671 2.0e-06 55.5 43 58.1
Phvul.008G035800 Phaseolus vulgaris HOM05D000027 ORTHO05D000671 2.0e-06 55.5 44 56.8
Prupe.5G203300 Prunus persica HOM05D000027 ORTHO05D000671 2.0e-06 55.5 58 44.8
RcHm_v2.0_Chr7g0182751 Rosa chinensis HOM05D000027 ORTHO05D000671 2.0e-06 55.5 60 45.0
PGSC0003DMG400001450 Solanum tuberosum HOM05D000027 ORTHO05D000671 2.0e-06 55.5 47 53.2
TWI34G0940 Tripterygium wilfordii HOM05D000027 ORTHO05D000671 2.0e-06 55.5 43 58.1
Cfa007657 Carpinus fangiana HOM05D000027 ORTHO05D000671 2.6e-06 55.1 43 55.8
Ciclev10028395m.g Citrus clementina HOM05D000027 ORTHO05D000671 2.6e-06 55.1 43 53.5
Eucgr.H02732 Eucalyptus grandis HOM05D000027 ORTHO05D000671 2.6e-06 55.1 43 55.8
Gorai.006G010800 Gossypium raimondii HOM05D000027 ORTHO05D000671 2.6e-06 55.1 43 55.8
Lsat_1_v5_gn_2_88720 Lactuca sativa HOM05D000027 ORTHO05D000671 2.6e-06 55.1 43 53.5
RcHm_v2.0_Chr2g0165951 Rosa chinensis HOM05D000027 ORTHO05D000671 2.6e-06 55.1 43 55.8
CSS0005171 Camellia sinensis var. sinensis HOM05D000027 ORTHO05D000671 3.3e-06 54.7 43 55.8
CANSAT64G0154 Cannabis sativa HOM05D000027 ORTHO05D000671 3.3e-06 54.7 43 55.8
Ciclev10001095m.g Citrus clementina HOM05D000027 ORTHO05D000671 3.3e-06 54.7 43 55.8
COL.COLO4_37586 Corchorus olitorius HOM05D000027 ORTHO05D000671 3.3e-06 54.7 44 50.0
Migut.H00633 Erythranthe guttata HOM05D000027 ORTHO05D000671 3.3e-06 54.7 44 54.5
MBI14_g24977_MAGBIO Magnolia biondii HOM05D000027 ORTHO05D000671 3.3e-06 54.7 43 55.8
QL02p068043 Quercus lobata HOM05D000027 ORTHO05D000671 3.3e-06 54.7 43 55.8
CiPaw.03G089100 Carya illinoinensis HOM05D000027 ORTHO05D000671 4.4e-06 54.3 43 58.1
Eucgr.H02704 Eucalyptus grandis HOM05D000027 ORTHO05D000671 4.4e-06 54.3 43 55.8
Eucgr.H02712 Eucalyptus grandis HOM05D000027 ORTHO05D000671 4.4e-06 54.3 43 55.8
Lsat_1_v5_gn_4_171580 Lactuca sativa HOM05D000027 ORTHO05D000671 4.4e-06 54.3 43 55.8
Potri.017G091500 Populus trichocarpa HOM05D000027 ORTHO05D000671 4.4e-06 54.3 43 53.5
QL09p026912 Quercus lobata HOM05D000027 ORTHO05D000671 4.4e-06 54.3 43 55.8
Rhsim10G0043400 Rhododendron simsii HOM05D000027 ORTHO05D000671 4.4e-06 54.3 43 55.8
TAR374G0117 Trochodendron aralioides HOM05D000027 ORTHO05D000671 4.4e-06 54.3 47 53.2
VMungo0464G1748 Vigna mungo HOM05D000027 ORTHO05D000671 4.4e-06 54.3 43 60.5
Haze_14438 Corylus avellana HOM05D000027 ORTHO05D000671 5.7e-06 53.9 43 55.8
Dinv10525 Davidia involucrata HOM05D000027 ORTHO05D000671 5.7e-06 53.9 43 60.5
FvH4_6g46970 Fragaria vesca HOM05D000027 ORTHO05D000671 5.7e-06 53.9 43 55.8
PGR004G2252 Punica granatum HOM05D000027 ORTHO05D000671 5.7e-06 53.9 43 53.5
TAR374G0783 Trochodendron aralioides HOM05D000027 ORTHO05D000671 5.7e-06 53.9 49 53.1
TAR622G0104 Trochodendron aralioides HOM05D000027 ORTHO05D000671 5.7e-06 53.9 44 50.0
Atru.chr1.3794 Acer truncatum HOM05D000027 ORTHO05D000671 7.5e-06 53.5 46 52.2
DCAR_026008 Daucus carota HOM05D000027 ORTHO05D000671 7.5e-06 53.5 45 51.1
MBI16_g06304_MAGBIO Magnolia biondii HOM05D000027 ORTHO05D000671 7.5e-06 53.5 43 55.8
Phvul.004G035600 Phaseolus vulgaris HOM05D000027 ORTHO05D000671 7.5e-06 53.5 43 55.8
TAR707G0001 Trochodendron aralioides HOM05D000027 ORTHO05D000671 7.5e-06 53.5 44 54.5
arahy.Tifrunner.gnm1.ann1.R5P48D Arachis hypogaea HOM05D000027 ORTHO05D000671 9.7e-06 53.1 44 50.0
arahy.Tifrunner.gnm1.ann1.UP4NHJ Arachis hypogaea HOM05D000027 ORTHO05D000671 9.7e-06 53.1 39 59.0
Cfa007656 Carpinus fangiana HOM05D000027 ORTHO05D000671 9.7e-06 53.1 45 53.3
Glyma.08G244600 Glycine max HOM05D000027 ORTHO05D000671 9.7e-06 53.1 44 56.8
Lju41A4T66 Lonicera japonica HOM05D000027 ORTHO05D000671 9.7e-06 53.1 43 51.2
MBI16_g36519_MAGBIO Magnolia biondii HOM05D000027 ORTHO05D000671 9.7e-06 53.1 42 57.1
MD06G1200500 Malus domestica HOM05D000027 ORTHO05D000671 9.7e-06 53.1 58 48.3
QL02p067707 Quercus lobata HOM05D000027 ORTHO05D000671 9.7e-06 53.1 51 52.9
QL09p026959 Quercus lobata HOM05D000027 ORTHO05D000671 9.7e-06 53.1 51 49.0
HPP92_001055 Vanilla planifolia HOM05D000027 ORTHO05D000671 9.7e-06 53.1 43 55.8


User provided reference genes

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