Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0165201 Rosa chinensis HOM05D007258 ORTHO05D008852 8.1e-98 360.5 198 100.0
FvH4_6g46551 Fragaria vesca HOM05D007258 ORTHO05D008852 3.2e-86 322.0 198 90.9
FAN05G4223 Fragaria x ananassa HOM05D000830 ORTHO05D008852 4.2e-86 321.6 174 91.4
FAN02G1393 Fragaria x ananassa HOM05D000830 ORTHO05D008852 6.0e-85 317.8 167 92.8
FAN14G1076 Fragaria x ananassa HOM05D000830 ORTHO05D008852 4.3e-83 311.6 188 84.6
MD17G1063700 Malus domestica HOM05D007258 ORTHO05D008852 3.3e-75 285.4 174 81.6
Prupe.3G250800 Prunus persica HOM05D007258 ORTHO05D008852 3.3e-75 285.4 172 81.4
MD17G1063100 Malus domestica HOM05D007258 ORTHO05D008852 3.4e-72 275.4 183 77.0
FAN09G2101 Fragaria x ananassa HOM05D000830 ORTHO05D008852 5.6e-67 258.1 145 91.0
Hma1.2p1_0069F.1_g037420 Hydrangea macrophylla HOM05D007258 ORTHO05D008852 2.6e-64 249.2 169 70.4
CSS0017666 Camellia sinensis var. sinensis HOM05D007258 ORTHO05D008852 1.0e-63 247.3 170 70.0
QL02p066408 Quercus lobata HOM05D007258 ORTHO05D008852 1.9e-62 243.0 170 71.2
Lsat_1_v5_gn_4_173160 Lactuca sativa HOM05D007258 ORTHO05D008852 3.2e-62 242.3 169 69.2
CANSAT64G1331 Cannabis sativa HOM05D007258 ORTHO05D008852 2.1e-61 239.6 168 69.6
CAN.G497.87 Capsicum annuum HOM05D007258 ORTHO05D008852 4.6e-61 238.4 169 66.9
Manes.02G057800 Manihot esculenta HOM05D007258 ORTHO05D008852 4.6e-61 238.4 166 68.7
Haze_25378 Corylus avellana HOM05D007258 ORTHO05D008852 7.9e-61 237.7 170 67.6
HanXRQChr09g0264921 Helianthus annuus HOM05D007258 ORTHO05D008852 1.0e-60 237.3 175 68.6
CiPaw.03G085000 Carya illinoinensis HOM05D007258 ORTHO05D008852 1.3e-60 236.9 170 68.8
Nitab4.5_0009044g0050 Nicotiana tabacum HOM05D007258 ORTHO05D008852 1.8e-60 236.5 169 66.9
VMungo0464G1058 Vigna mungo HOM05D007258 ORTHO05D008852 1.8e-60 236.5 164 68.9
Rhsim08G0075900 Rhododendron simsii HOM05D007258 ORTHO05D008852 3.0e-60 235.7 170 70.0
Glyma.13G053500 Glycine max HOM05D007258 ORTHO05D008852 3.9e-60 235.3 171 66.7
SGA_v2.0_scaffold148G36428 Striga asiatica HOM05D003455 ORTHO05D004165 6.7e-60 234.6 169 66.9
THA.LOC104802980 Tarenaya hassleriana HOM05D007258 ORTHO05D008852 1.1e-59 233.8 167 68.9
TPR.G4313 Trifolium pratense HOM05D007258 ORTHO05D008852 3.3e-59 232.3 165 70.3
ECA232G3790 Erigeron canadensis HOM05D007258 ORTHO05D008852 5.7e-59 231.5 169 66.9
Nn4g23475 Nelumbo nucifera HOM05D007258 ORTHO05D008852 5.7e-59 231.5 172 65.1
Potri.004G116800 Populus trichocarpa HOM05D007258 ORTHO05D008852 5.7e-59 231.5 167 66.5
Lalb_Chr21g0318311 Lupinus albus HOM05D007258 ORTHO05D008852 1.3e-58 230.3 164 67.1
Ca_20770_v3 Cicer arietinum L. HOM05D000600 ORTHO05D000432 1.6e-58 229.9 157 72.0
PGSC0003DMG400001370 Solanum tuberosum HOM05D007258 ORTHO05D008852 2.1e-58 229.6 169 63.9
Psat1g066400 Pisum sativum HOM05D007258 ORTHO05D008852 2.8e-58 229.2 165 68.5
Sopen02g033890 Solanum pennellii HOM05D007258 ORTHO05D008852 2.8e-58 229.2 169 63.9
Medtr6g015855 Medicago truncatula HOM05D007258 ORTHO05D008852 4.8e-58 228.4 165 67.3
Phvul.004G041100 Phaseolus vulgaris HOM05D007258 ORTHO05D008852 8.2e-58 227.6 164 67.1
Cc07_g04400 Coffea canephora HOM05D007258 ORTHO05D008852 1.1e-57 227.3 170 65.9
Sabra04G0070300 Salix brachista HOM05D000830 ORTHO05D008852 1.1e-57 227.3 167 67.1
Aa31LG5G12750 Aethionema arabicum HOM05D007258 ORTHO05D008852 1.4e-57 226.9 164 69.5
Sed0003620 Sechium edule HOM05D007258 ORTHO05D008852 1.8e-57 226.5 171 68.4
Glyma.19G033200 Glycine max HOM05D007258 ORTHO05D008852 2.4e-57 226.1 151 69.5
arahy.Tifrunner.gnm1.ann1.TJ02B2 Arachis hypogaea HOM05D007258 ORTHO05D008852 3.1e-57 225.7 163 68.7
arahy.Tifrunner.gnm1.ann1.GI8EHX Arachis hypogaea HOM05D007258 ORTHO05D008852 4.1e-57 225.3 163 68.1
unitig_32.g11768 Utricularia gibba HOM05D007258 ORTHO05D008852 5.3e-57 224.9 171 64.9
Solyc02g089100.3 Solanum lycopersicum HOM05D007258 ORTHO05D008852 6.9e-57 224.6 163 65.0
Lj2g0017705 Lotus japonicus HOM05D007258 ORTHO05D008852 9.0e-57 224.2 163 68.1
Cpa.g.sc14.201 Carica papaya HOM05D007258 ORTHO05D008852 1.2e-56 223.8 169 63.3
Thhalv10021265m.g Eutrema salsugineum HOM05D007258 ORTHO05D008852 2.0e-56 223.0 164 68.3
CsaV3_5G038620 Cucumis sativus L. HOM05D007258 ORTHO05D008852 3.4e-56 222.2 171 66.1
HPP92_001847 Vanilla planifolia HOM05D007258 ORTHO05D008852 3.4e-56 222.2 143 72.7
MSTRG.15441 Avicennia marina HOM05D007258 ORTHO05D008852 4.5e-56 221.9 153 72.5
Thecc.04G103600 Theobroma cacao HOM05D007258 ORTHO05D008852 4.5e-56 221.9 173 64.7
GSVIVG01036568001 Vitis vinifera HOM05D007258 ORTHO05D008852 4.5e-56 221.9 168 65.5
CARHR076190 Cardamine hirsuta HOM05D007258 ORTHO05D008852 5.9e-56 221.5 164 67.7
Gorai.001G208500 Gossypium raimondii HOM05D007258 ORTHO05D008852 7.6e-56 221.1 172 65.1
PGR004G1744 Punica granatum HOM05D007258 ORTHO05D008852 7.6e-56 221.1 164 65.9
Sp3g01290 Schrenkiella parvula HOM05D007258 ORTHO05D008852 7.6e-56 221.1 164 68.3
Ciclev10012686m.g Citrus clementina HOM05D007258 ORTHO05D008852 1.0e-55 220.7 169 63.9
Gohir.D07G187600 Gossypium hirsutum HOM05D007258 ORTHO05D008852 1.0e-55 220.7 172 65.1
Migut.K01261 Erythranthe guttata HOM05D007258 ORTHO05D008852 2.2e-55 219.5 169 62.7
AL3G11470 Arabidopsis lyrata HOM05D007258 ORTHO05D008852 2.9e-55 219.2 164 68.3
AUR62009496 Chenopodium quinoa HOM05D007258 ORTHO05D008852 2.9e-55 219.2 169 62.7
MELO3C022042.2 Cucumis melo HOM05D007258 ORTHO05D008852 2.9e-55 219.2 171 64.3
BcaC05g30335 Brassica carinata HOM05D007258 ORTHO05D008852 3.8e-55 218.8 164 68.3
A05p45100 Brassica napus HOM05D007258 ORTHO05D008852 3.8e-55 218.8 164 68.3
C09p75600 Brassica napus HOM05D007258 ORTHO05D008852 3.8e-55 218.8 164 68.3
BolC5t35098H Brassica oleracea HOM05D007258 ORTHO05D008852 3.8e-55 218.8 164 68.3
BraA05t23151Z Brassica rapa HOM05D007258 ORTHO05D008852 3.8e-55 218.8 164 68.3
Duzib138G1000 Durio zibethinus HOM05D007258 ORTHO05D008852 5.0e-55 218.4 169 64.5
MD17G1063300 Malus domestica HOM05D007258 ORTHO05D008852 8.4e-55 217.6 118 85.6
BcaC05g30334 Brassica carinata HOM05D007258 ORTHO05D008852 1.1e-54 217.2 165 67.9
AT3G02220 Arabidopsis thaliana HOM05D007258 ORTHO05D008852 2.5e-54 216.1 164 67.7
Hund16216 Selenicereus undatus HOM05D007258 ORTHO05D008852 2.5e-54 216.1 169 65.1
Cfa010690 Carpinus fangiana HOM05D007258 ORTHO05D008852 3.2e-54 215.7 130 76.9
Sc11g0008720 Simmondsia chinensis HOM05D007258 ORTHO05D008852 3.2e-54 215.7 169 63.9
Carub.0003s0134 Capsella rubella HOM05D007258 ORTHO05D008852 5.5e-54 214.9 164 66.5
TWI34G1392 Tripterygium wilfordii HOM05D007258 ORTHO05D008852 1.2e-53 213.8 166 63.9
PSO017G7301 Papaver somniferum HOM05D007258 ORTHO05D008852 2.1e-53 213.0 166 63.3
CDE07G1188 Ceratophyllum demersum HOM05D007258 ORTHO05D008852 3.5e-53 212.2 156 66.0
PSO478G0672 Papaver somniferum HOM05D007258 ORTHO05D008852 3.5e-53 212.2 166 62.7
Aqoxy3G00517 Aquilegia oxysepala HOM05D007258 ORTHO05D008852 1.8e-52 209.9 172 62.2
COL.COLO4_03895 Corchorus olitorius HOM05D007258 ORTHO05D008852 3.9e-52 208.8 131 73.3
Oeu004419.1 Olea europaea HOM05D007258 ORTHO05D008852 3.9e-52 208.8 131 73.3
Haze_03284 Corylus avellana HOM05D007258 ORTHO05D008852 3.3e-51 205.7 154 65.6
Os01g0763000 Oryza sativa ssp. japonica HOM05D007258 ORTHO05D008852 4.8e-50 201.8 170 57.6
EL10Ac2g04457 Beta vulgaris HOM05D007258 ORTHO05D008852 1.4e-49 200.3 194 56.7
Eucgr.L02288 Eucalyptus grandis HOM05D007258 ORTHO05D008852 3.1e-49 199.1 183 58.5
MD09G1072600 Malus domestica HOM05D007258 ORTHO05D008852 1.2e-48 197.2 170 62.4
SEGI_41097 Sequoiadendron giganteum HOM05D007258 ORTHO05D008852 1.3e-47 193.7 157 62.4
TAR374G0815 Trochodendron aralioides HOM05D007258 ORTHO05D008852 1.7e-47 193.4 156 63.5
Zm00001eb152360 Zea mays HOM05D007258 ORTHO05D008852 8.5e-47 191.0 128 64.8
Haze_14398 Corylus avellana HOM05D000041 ORTHO05D000061 7.2e-46 188.0 145 64.1
Gohir.A07G181100 Gossypium hirsutum HOM05D007258 ORTHO05D008852 1.6e-45 186.8 170 57.1
Eucgr.I02051 Eucalyptus grandis HOM05D007258 ORTHO05D008852 6.1e-45 184.9 151 63.6
Pp3c24_10 Physcomitrium patens HOM05D007258 ORTHO05D008852 6.1e-45 184.9 152 58.6
Actinidia17595 Actinidia chinensis HOM05D007258 ORTHO05D008852 4.1e-41 172.2 154 58.4
Nitab4.5_0005120g0080 Nicotiana tabacum HOM05D007258 ORTHO05D008852 6.1e-37 158.3 185 50.8
CDE04G0513 Ceratophyllum demersum HOM05D007258 ORTHO05D008852 4.4e-35 152.1 173 49.7
Atru.BG.153.p Acer truncatum HOM05D007258 ORTHO05D008852 3.1e-33 146.0 75 82.7
CBR_g1012 Chara braunii HOM05D007258 ORTHO05D008852 5.5e-30 135.2 139 48.2
AagrBONN_evm.TU.Sc2ySwM_117.3322 Anthoceros agrestis HOM05D007258 ORTHO05D008852 8.8e-28 127.9 146 43.8
ClCG11G004890 Citrullus lanatus HOM05D007258 ORTHO05D008852 6.5e-23 111.7 59 78.0
BcaB03g16148 Brassica carinata HOM05D007258 ORTHO05D008852 1.9e-22 110.2 76 67.1
vmacro18138 Vaccinium macrocarpon HOM05D007258 ORTHO05D008852 6.3e-18 95.1 91 58.2
SEGI_23358 Sequoiadendron giganteum HOM05D007258 ORTHO05D008852 3.1e-17 92.8 95 54.7
Lsat_1_v5_gn_4_141000 Lactuca sativa HOM05D007258 ORTHO05D008852 7.0e-17 91.7 57 71.9
Lsat_1_v5_gn_7_113001 Lactuca sativa HOM05D007258 ORTHO05D008852 1.1e-14 84.3 56 69.6
ATR0037G004 Amborella trichopoda HOM05D007258 ORTHO05D008852 1.5e-14 84.0 46 76.1
ATR0037G029 Amborella trichopoda HOM05D007258 ORTHO05D008852 3.0e-12 76.3 104 48.1
Actinidia26259 Actinidia chinensis HOM05D007258 ORTHO05D008852 4.0e-12 75.9 78 56.4
MCO01G001 Micromonas commoda HOM05D007258 ORTHO05D008852 5.6e-06 55.5 95 31.6


User provided reference genes

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