Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0164961 Rosa chinensis HOM05D007430 ORTHO05D009322 9.5e-68 260.0 127 100.0
FAN14G5598 Fragaria x ananassa HOM05D007430 ORTHO05D009322 2.4e-55 218.8 111 94.6
FAN05G2487 Fragaria x ananassa HOM05D007430 ORTHO05D009322 1.7e-53 212.6 111 91.9
FAN09G2572 Fragaria x ananassa HOM05D007430 ORTHO05D009322 2.3e-53 212.2 111 91.9
MD17G1065300 Malus domestica HOM05D007430 ORTHO05D009322 4.9e-48 194.5 109 83.5
Prupe.3G249500 Prunus persica HOM05D007430 ORTHO05D009322 6.4e-48 194.1 110 81.8
FvH4_6g46430 Fragaria vesca HOM05D007430 ORTHO05D009322 3.2e-47 191.8 99 93.9
Lalb_Chr02g0158751 Lupinus albus HOM05D007430 ORTHO05D009322 5.1e-45 184.5 111 76.6
Thecc.04G105400 Theobroma cacao HOM05D007430 ORTHO05D009322 1.9e-44 182.6 108 79.6
TWI34G0957 Tripterygium wilfordii HOM05D007430 ORTHO05D009322 1.9e-44 182.6 114 74.6
Duzib138G0563 Durio zibethinus HOM05D007430 ORTHO05D009322 3.3e-44 181.8 112 75.9
Lj2g0026299 Lotus japonicus HOM05D007430 ORTHO05D009322 3.3e-44 181.8 111 74.8
QL02p065966 Quercus lobata HOM05D007430 ORTHO05D009322 3.3e-44 181.8 110 79.1
Eucgr.C00827 Eucalyptus grandis HOM05D007430 ORTHO05D009322 7.3e-44 180.6 110 73.6
Ca_14394_v3 Cicer arietinum L. HOM05D007430 ORTHO05D009322 2.1e-43 179.1 109 74.3
GSVIVG01037660001 Vitis vinifera HOM05D007430 ORTHO05D009322 8.1e-43 177.2 110 74.5
Gohir.D07G186800 Gossypium hirsutum HOM05D007430 ORTHO05D009322 1.4e-42 176.4 110 76.4
Gorai.001G207400 Gossypium raimondii HOM05D007430 ORTHO05D009322 1.4e-42 176.4 110 76.4
Glyma.19G034200 Glycine max HOM05D007430 ORTHO05D009322 2.4e-42 175.6 109 69.7
Gohir.A07G179900 Gossypium hirsutum HOM05D007430 ORTHO05D009322 2.4e-42 175.6 110 76.4
Sabra17G0085900 Salix brachista HOM05D007430 ORTHO05D009322 2.4e-42 175.6 109 74.3
Potri.017G099600 Populus trichocarpa HOM05D007430 ORTHO05D009322 1.5e-41 172.9 109 72.5
Dinv33859 Davidia involucrata HOM05D007430 ORTHO05D009322 2.0e-41 172.6 114 71.9
arahy.Tifrunner.gnm1.ann1.LXP3AQ Arachis hypogaea HOM05D007430 ORTHO05D009322 3.4e-41 171.8 111 73.0
Medtr6g015965 Medicago truncatula HOM05D007430 ORTHO05D009322 5.8e-41 171.0 109 69.7
PGR004G1880 Punica granatum HOM05D007430 ORTHO05D009322 5.8e-41 171.0 111 71.2
arahy.Tifrunner.gnm1.ann1.T6F203 Arachis hypogaea HOM05D007430 ORTHO05D009322 7.6e-41 170.6 111 72.1
TPR.G15952 Trifolium pratense HOM05D007430 ORTHO05D009322 1.7e-40 169.5 109 68.8
Manes.02G059000 Manihot esculenta HOM05D007430 ORTHO05D009322 2.9e-40 168.7 109 72.5
FAN02G0166 Fragaria x ananassa HOM05D007430 ORTHO05D009322 8.4e-40 167.2 99 84.8
CiPaw.03G083500 Carya illinoinensis HOM05D007430 ORTHO05D009322 1.1e-39 166.8 109 72.5
TAR371G1216 Trochodendron aralioides HOM05D007430 ORTHO05D009322 9.3e-39 163.7 109 69.7
Phvul.004G042100 Phaseolus vulgaris HOM05D007430 ORTHO05D009322 2.1e-38 162.5 109 67.0
VMungo0464G1827 Vigna mungo HOM05D007430 ORTHO05D009322 3.5e-38 161.8 109 66.1
TAR629G2042 Trochodendron aralioides HOM05D007430 ORTHO05D009322 6.0e-38 161.0 108 67.6
Nn8g40106 Nelumbo nucifera HOM05D007430 ORTHO05D009322 2.3e-37 159.1 108 69.4
Phvul.004G041900 Phaseolus vulgaris HOM05D007430 ORTHO05D009322 2.3e-37 159.1 109 65.1
Ciclev10013162m.g Citrus clementina HOM05D007430 ORTHO05D009322 3.0e-37 158.7 108 64.8
Hma1.2p1_1502F.1_g287440 Hydrangea macrophylla HOM05D007430 ORTHO05D009322 8.7e-37 157.1 108 70.4
PSO478G2979 Papaver somniferum HOM05D007430 ORTHO05D009322 1.1e-36 156.8 108 64.8
CsaV3_4G010120 Cucumis sativus L. HOM05D007430 ORTHO05D009322 1.5e-36 156.4 107 65.4
Cpa.g.sc14.221 Carica papaya HOM05D007430 ORTHO05D009322 3.3e-36 155.2 109 68.8
CANSAT64G0392 Cannabis sativa HOM05D007430 ORTHO05D009322 5.6e-36 154.5 110 69.1
Sed0003360 Sechium edule HOM05D007430 ORTHO05D009322 5.6e-36 154.5 107 66.4
PSO017G6770 Papaver somniferum HOM05D007430 ORTHO05D009322 7.4e-36 154.1 108 64.8
Atru.chr8.658 Acer truncatum HOM05D007430 ORTHO05D009322 1.3e-35 153.3 105 67.6
Aqoxy3G00539 Aquilegia oxysepala HOM05D007430 ORTHO05D009322 1.6e-35 152.9 109 65.1
CSS0032789 Camellia sinensis var. sinensis HOM05D007430 ORTHO05D009322 2.8e-35 152.1 109 67.0
CSS0049466 Camellia sinensis var. sinensis HOM05D007430 ORTHO05D009322 2.8e-35 152.1 109 67.0
ClCG07G016000 Citrullus lanatus HOM05D007430 ORTHO05D009322 4.8e-35 151.4 107 64.5
MELO3C032688.2 Cucumis melo HOM05D007430 ORTHO05D009322 3.1e-34 148.7 108 63.9
Sc10g0000620 Simmondsia chinensis HOM05D007430 ORTHO05D009322 4.0e-34 148.3 111 61.3
Actinidia36267 Actinidia chinensis HOM05D007430 ORTHO05D009322 1.2e-33 146.7 108 66.7
MBI16_g22331_MAGBIO Magnolia biondii HOM05D007430 ORTHO05D009322 3.4e-33 145.2 109 65.1
EL10Ac8g20552 Beta vulgaris HOM05D007430 ORTHO05D009322 7.6e-33 144.1 111 62.2
DCAR_003124 Daucus carota HOM05D007430 ORTHO05D009322 1.3e-32 143.3 126 55.6
ECA238G2295 Erigeron canadensis HOM05D007430 ORTHO05D009322 1.7e-32 142.9 109 57.8
Os03g0414400 Oryza sativa ssp. japonica HOM05D007430 ORTHO05D009322 2.2e-32 142.5 109 55.0
HanXRQChr14g0452451 Helianthus annuus HOM05D007430 ORTHO05D009322 2.9e-32 142.1 109 59.6
vmacro05615 Vaccinium macrocarpon HOM05D007430 ORTHO05D009322 6.4e-32 141.0 107 61.7
Hund13678 Selenicereus undatus HOM05D007430 ORTHO05D009322 8.4e-32 140.6 110 65.5
AUR62023164 Chenopodium quinoa HOM05D007430 ORTHO05D009322 1.1e-31 140.2 108 66.7
Cc01_g15140 Coffea canephora HOM05D007430 ORTHO05D009322 2.4e-31 139.0 108 60.2
Duzib133G1191 Durio zibethinus HOM05D007430 ORTHO05D009322 7.1e-31 137.5 87 75.9
Lsat_1_v5_gn_2_89680 Lactuca sativa HOM05D007430 ORTHO05D009322 7.1e-31 137.5 109 57.8
THA.LOC104820974 Tarenaya hassleriana HOM05D007430 ORTHO05D009322 9.3e-31 137.1 111 60.4
Aa31LG11G13770 Aethionema arabicum HOM05D007430 ORTHO05D009322 2.1e-30 136.0 111 58.6
CAN.G854.12 Capsicum annuum HOM05D007430 ORTHO05D009322 1.8e-29 132.9 107 60.7
AUR62009486 Chenopodium quinoa HOM05D007430 ORTHO05D009322 1.8e-29 132.9 108 63.0
Oeu007080.1 Olea europaea HOM05D007430 ORTHO05D009322 1.8e-29 132.9 111 56.8
PGSC0003DMG400006148 Solanum tuberosum HOM05D007430 ORTHO05D009322 1.8e-29 132.9 109 61.5
Sopen07g024280 Solanum pennellii HOM05D007430 ORTHO05D009322 5.1e-29 131.3 109 62.4
ATR0559G319 Amborella trichopoda HOM05D007430 ORTHO05D009322 1.1e-28 130.2 109 57.8
CARHR197520 Cardamine hirsuta HOM05D007430 ORTHO05D009322 1.5e-28 129.8 111 54.1
AL6G26650 Arabidopsis lyrata HOM05D007430 ORTHO05D009322 2.5e-28 129.0 111 55.0
AT5G15802 Arabidopsis thaliana HOM05D007430 ORTHO05D009322 2.5e-28 129.0 111 55.0
SGA_v2.0_scaffold148G36438 Striga asiatica HOM05D007430 ORTHO05D009322 2.5e-28 129.0 107 54.2
MSTRG.3403 Avicennia marina HOM05D007430 ORTHO05D009322 3.3e-28 128.6 115 55.7
Duzib138G1572 Durio zibethinus HOM05D007430 ORTHO05D009322 3.3e-28 128.6 118 56.8
Thhalv10015108m.g Eutrema salsugineum HOM05D007430 ORTHO05D009322 9.6e-28 127.1 112 55.4
Solyc07g047840.2 Solanum lycopersicum HOM05D007430 ORTHO05D009322 4.8e-27 124.8 109 57.8
HPP92_007986 Vanilla planifolia HOM05D007430 ORTHO05D009322 6.2e-27 124.4 102 59.8
MD09G1073800 Malus domestica HOM05D007430 ORTHO05D009322 1.8e-26 122.9 70 84.3
C09p61270 Brassica napus HOM05D007430 ORTHO05D009322 2.4e-26 122.5 111 52.3
Migut.O00383 Erythranthe guttata HOM05D007430 ORTHO05D009322 3.1e-26 122.1 108 55.6
BcaC04g18935 Brassica carinata HOM05D007430 ORTHO05D009322 6.9e-26 120.9 111 51.4
BolC9t58969H Brassica oleracea HOM05D007430 ORTHO05D009322 6.9e-26 120.9 111 51.4
A10p23220 Brassica napus HOM05D007430 ORTHO05D009322 9.0e-26 120.6 111 51.4
BraA10t44390Z Brassica rapa HOM05D007430 ORTHO05D009322 9.0e-26 120.6 111 51.4
SalBow1G0910 Salvia bowleyana HOM05D000293 ORTHO05D000180 5.8e-25 117.9 105 55.2
Carub.0006s1396 Capsella rubella HOM05D007430 ORTHO05D009322 2.2e-24 115.9 111 50.5
Sp6g28310 Schrenkiella parvula HOM05D007430 ORTHO05D009322 1.9e-23 112.8 114 48.2
CDE09G0787 Ceratophyllum demersum HOM05D007430 ORTHO05D009322 1.2e-22 110.2 110 58.2
MBI16_g39931_MAGBIO Magnolia biondii HOM05D007430 ORTHO05D009322 1.8e-21 106.3 109 51.4
Psat1g066840 Pisum sativum HOM05D007430 ORTHO05D009322 5.1e-21 104.8 67 73.1
unitig_32.g10757 Utricularia gibba HOM05D000600 ORTHO05D000432 3.3e-20 102.1 107 47.7
Nitab4.5_0000441g0090 Nicotiana tabacum HOM05D007430 ORTHO05D009322 4.3e-20 101.7 98 54.1
Nitab4.5_0009877g0030 Nicotiana tabacum HOM05D007430 ORTHO05D009322 1.6e-19 99.8 65 69.2
CDE02G4259 Ceratophyllum demersum HOM05D007430 ORTHO05D009322 2.2e-19 99.4 60 83.3
SEGI_38988 Sequoiadendron giganteum HOM05D007430 ORTHO05D009322 1.4e-18 96.7 107 46.7
Pp3c7_870 Physcomitrium patens HOM05D007430 ORTHO05D009322 4.2e-15 85.1 107 37.4
Mapoly0015s0072 Marchantia polymorpha HOM05D007430 ORTHO05D009322 9.4e-15 84.0 107 40.2
AagrBONN_evm.TU.Sc2ySwM_228.315 Anthoceros agrestis HOM05D007430 ORTHO05D009322 2.7e-14 82.4 108 40.7
COL.COLO4_08471 Corchorus olitorius HOM05D007430 ORTHO05D009322 1.8e-10 69.7 37 91.9
VMungo1080G1538 Vigna mungo HOM05D000002 ORTHO05D000001 2.2e-08 62.8 54 46.3
CBR_g37835 Chara braunii HOM05D007430 ORTHO05D009322 4.2e-07 58.5 65 41.5
Rhsim10G0056400 Rhododendron simsii HOM05D007430 ORTHO05D009322 1.6e-06 56.6 39 69.2


User provided reference genes

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