Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0164921 Rosa chinensis HOM05D004605 ORTHO05D005804 1.1e-127 459.9 221 100.0
FvH4_6g46390 Fragaria vesca HOM05D004605 ORTHO05D005804 2.4e-119 432.2 221 92.3
FAN05G4053 Fragaria x ananassa HOM05D004605 ORTHO05D005804 1.1e-114 416.8 229 86.9
FAN14G2038 Fragaria x ananassa HOM05D004605 ORTHO05D005804 2.2e-104 382.5 203 87.7
Prupe.3G249100 Prunus persica HOM05D004605 ORTHO05D005804 4.3e-100 368.2 216 78.2
MD09G1074300 Malus domestica HOM05D004605 ORTHO05D005804 2.6e-97 359.0 210 79.0
MD17G1065700 Malus domestica HOM05D004605 ORTHO05D005804 3.2e-95 352.1 216 75.5
FAN02G3403 Fragaria x ananassa HOM05D004605 ORTHO05D005804 1.3e-91 340.1 170 93.5
Cfa007695 Carpinus fangiana HOM05D004605 ORTHO05D005804 3.6e-86 322.0 218 70.2
FAN09G1153 Fragaria x ananassa HOM05D004605 ORTHO05D005804 3.6e-86 322.0 242 71.1
Atru.chr8.648 Acer truncatum HOM05D004605 ORTHO05D005804 6.1e-86 321.2 212 72.2
Haze_14382 Corylus avellana HOM05D004605 ORTHO05D005804 7.9e-86 320.9 218 70.2
Thecc.04G106100 Theobroma cacao HOM05D004605 ORTHO05D005804 1.5e-84 316.6 217 68.2
QL02p065873 Quercus lobata HOM05D004605 ORTHO05D005804 2.5e-84 315.8 217 68.2
Ciclev10012619m.g Citrus clementina HOM05D004605 ORTHO05D005804 3.3e-84 315.5 217 67.3
Gohir.D07G186600 Gossypium hirsutum HOM05D004605 ORTHO05D005804 7.4e-84 314.3 217 68.2
Gorai.001G207200 Gossypium raimondii HOM05D004605 ORTHO05D005804 7.4e-84 314.3 217 68.2
Lalb_Chr10g0092731 Lupinus albus HOM05D004605 ORTHO05D005804 7.4e-84 314.3 221 68.8
TWI60G1007 Tripterygium wilfordii HOM05D004605 ORTHO05D005804 9.7e-84 313.9 210 70.5
Peaxi162Scf00020g10235 Petunia axillaris HOM05D004605 ORTHO05D005804 1.6e-83 313.2 215 67.0
Gohir.A07G179800 Gossypium hirsutum HOM05D004605 ORTHO05D005804 2.2e-83 312.8 217 68.2
MELO3C026298.2 Cucumis melo HOM05D004605 ORTHO05D005804 2.8e-83 312.4 221 67.4
CsaV3_4G010080 Cucumis sativus L. HOM05D004605 ORTHO05D005804 3.7e-83 312.0 221 67.4
CANSAT64G2231 Cannabis sativa HOM05D004605 ORTHO05D005804 4.8e-83 311.6 219 65.8
Potri.017G100000 Populus trichocarpa HOM05D004605 ORTHO05D005804 4.8e-83 311.6 221 69.2
Lju361C6G5 Lonicera japonica HOM05D004605 ORTHO05D005804 6.3e-83 311.2 213 69.0
Manes.02G059400 Manihot esculenta HOM05D004605 ORTHO05D005804 8.2e-83 310.8 217 66.8
COL.COLO4_10258 Corchorus olitorius HOM05D004605 ORTHO05D005804 1.8e-82 309.7 221 65.6
Actinidia26268 Actinidia chinensis HOM05D004605 ORTHO05D005804 5.3e-82 308.1 212 67.5
Hund16233 Selenicereus undatus HOM05D004605 ORTHO05D005804 5.3e-82 308.1 221 66.5
VMungo1383G2960 Vigna mungo HOM05D004605 ORTHO05D005804 6.9e-82 307.8 208 69.2
arahy.Tifrunner.gnm1.ann1.M6S7AL Arachis hypogaea HOM05D004605 ORTHO05D005804 9.0e-82 307.4 210 68.6
GSVIVG01036547001 Vitis vinifera HOM05D004605 ORTHO05D005804 9.0e-82 307.4 212 67.0
ClCG07G016040 Citrullus lanatus HOM05D004605 ORTHO05D005804 1.2e-81 307.0 221 66.1
arahy.Tifrunner.gnm1.ann1.90K79T Arachis hypogaea HOM05D004605 ORTHO05D005804 2.6e-81 305.8 210 68.6
Duzib133G0947 Durio zibethinus HOM05D004605 ORTHO05D005804 3.4e-81 305.4 221 65.6
CiPaw.03G083000 Carya illinoinensis HOM05D004605 ORTHO05D005804 4.5e-81 305.1 212 67.0
Manes.01G103400 Manihot esculenta HOM05D004605 ORTHO05D005804 5.9e-81 304.7 217 65.0
Glyma.18G273900 Glycine max HOM05D004605 ORTHO05D005804 7.7e-81 304.3 210 68.1
Hma1.2p1_0474F.1_g160750 Hydrangea macrophylla HOM05D004605 ORTHO05D005804 1.7e-80 303.1 217 67.3
Sed0020846 Sechium edule HOM05D004605 ORTHO05D005804 1.7e-80 303.1 221 64.7
Oeu031839.1 Olea europaea HOM05D004605 ORTHO05D005804 2.2e-80 302.8 212 67.0
CiPaw.03G083100 Carya illinoinensis HOM05D004605 ORTHO05D005804 2.9e-80 302.4 217 66.4
Cpa.g.sc14.228 Carica papaya HOM05D004605 ORTHO05D005804 3.8e-80 302.0 213 66.2
Nitab4.5_0001339g0150 Nicotiana tabacum HOM05D004605 ORTHO05D005804 3.8e-80 302.0 215 65.1
TAR629G2115 Trochodendron aralioides HOM05D004605 ORTHO05D005804 3.8e-80 302.0 213 66.2
Phvul.008G027000 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 6.5e-80 301.2 208 67.3
Duzib138G1714 Durio zibethinus HOM05D004605 ORTHO05D005804 1.1e-79 300.4 222 64.0
Rhsim08G0077200 Rhododendron simsii HOM05D004605 ORTHO05D005804 1.1e-79 300.4 205 70.2
Phvul.008G027600 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 1.4e-79 300.1 208 68.8
Phvul.008G026800 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 1.9e-79 299.7 208 67.3
SGA_v2.0_scaffold148G36445 Striga asiatica HOM05D004605 ORTHO05D005804 2.5e-79 299.3 212 65.1
Medtr7g016650 Medicago truncatula HOM05D004605 ORTHO05D005804 3.2e-79 298.9 210 67.6
SalBow1G3999 Salvia bowleyana HOM05D004605 ORTHO05D005804 4.2e-79 298.5 213 65.3
CSS0024904 Camellia sinensis var. sinensis HOM05D004605 ORTHO05D005804 5.5e-79 298.1 212 65.1
Nitab4.5_0007530g0010 Nicotiana tabacum HOM05D004605 ORTHO05D005804 7.2e-79 297.7 215 64.2
Sabra17G0086200 Salix brachista HOM05D004605 ORTHO05D005804 7.2e-79 297.7 215 65.6
Sopen02g034020 Solanum pennellii HOM05D004605 ORTHO05D005804 7.2e-79 297.7 212 64.2
PGSC0003DMG400001379 Solanum tuberosum HOM05D004605 ORTHO05D005804 1.6e-78 296.6 212 63.7
Solyc02g089230.3 Solanum lycopersicum HOM05D004605 ORTHO05D005804 3.6e-78 295.4 212 63.7
CAN.G497.71 Capsicum annuum HOM05D004605 ORTHO05D005804 6.1e-78 294.7 212 64.2
Prupe.3G249000 Prunus persica HOM05D004605 ORTHO05D005804 6.1e-78 294.7 216 62.5
Lj1g0025970 Lotus japonicus HOM05D004605 ORTHO05D005804 7.9e-78 294.3 210 66.7
PSO675G6317 Papaver somniferum HOM05D004605 ORTHO05D005804 1.4e-77 293.5 208 65.4
Glyma.08G251200 Glycine max HOM05D004605 ORTHO05D005804 1.8e-77 293.1 208 65.9
DCAR_021425 Daucus carota HOM05D004605 ORTHO05D005804 3.9e-77 292.0 217 63.1
Aqoxy3G03715 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 5.1e-77 291.6 220 61.4
Ca_06902_v3 Cicer arietinum L. HOM05D004605 ORTHO05D005804 6.7e-77 291.2 210 64.8
Migut.H00587 Erythranthe guttata HOM05D004605 ORTHO05D005804 6.7e-77 291.2 214 64.0
VMungo1383G3490 Vigna mungo HOM05D004605 ORTHO05D005804 8.8e-77 290.8 208 66.3
THA.LOC104805526 Tarenaya hassleriana HOM05D004605 ORTHO05D005804 2.6e-76 289.3 211 64.0
HanXRQChr14g0452481 Helianthus annuus HOM05D004605 ORTHO05D005804 4.3e-76 288.5 216 61.1
A07p19860 Brassica napus HOM05D004605 ORTHO05D005804 5.7e-76 288.1 221 63.8
Thhalv10027927m.g Eutrema salsugineum HOM05D004605 ORTHO05D005804 5.7e-76 288.1 219 62.6
BraA07t29690Z Brassica rapa HOM05D004605 ORTHO05D005804 7.4e-76 287.7 221 63.8
C06p18440 Brassica napus HOM05D004605 ORTHO05D005804 9.7e-76 287.3 221 64.3
PSO732G0027 Papaver somniferum HOM05D004605 ORTHO05D005804 2.2e-75 286.2 205 64.4
ECA238G2860 Erigeron canadensis HOM05D004605 ORTHO05D005804 3.7e-75 285.4 211 61.6
BcaB02g07994 Brassica carinata HOM05D004605 ORTHO05D005804 4.8e-75 285.0 221 62.0
BcaC08g44406 Brassica carinata HOM05D004605 ORTHO05D005804 4.8e-75 285.0 221 63.8
BolC6t37056H Brassica oleracea HOM05D004605 ORTHO05D005804 4.8e-75 285.0 221 63.8
Psat3g203400 Pisum sativum HOM05D004605 ORTHO05D005804 3.1e-74 282.3 210 63.8
TPR.G23408 Trifolium pratense HOM05D004605 ORTHO05D005804 4.1e-74 282.0 210 63.8
Zm00001eb219300 Zea mays HOM05D004605 ORTHO05D005804 5.3e-74 281.6 216 59.3
Carub.0007s3694 Capsella rubella HOM05D004605 ORTHO05D005804 9.1e-74 280.8 215 60.5
Aa31LG9G16810 Aethionema arabicum HOM05D004605 ORTHO05D005804 1.2e-73 280.4 219 61.6
Lsat_1_v5_gn_2_90241 Lactuca sativa HOM05D004605 ORTHO05D005804 1.2e-73 280.4 210 61.4
AL7G51520 Arabidopsis lyrata HOM05D004605 ORTHO05D005804 2.0e-73 279.6 219 60.7
AT5G38900 Arabidopsis thaliana HOM05D004605 ORTHO05D005804 2.6e-73 279.3 219 60.7
Sp7g03000 Schrenkiella parvula HOM05D004605 ORTHO05D005804 2.6e-73 279.3 219 60.3
Zm00001eb049940 Zea mays HOM05D004605 ORTHO05D005804 2.6e-73 279.3 209 62.2
Os03g0598900 Oryza sativa ssp. japonica HOM05D004605 ORTHO05D005804 4.5e-73 278.5 209 62.2
MSTRG.15437 Avicennia marina HOM05D004605 ORTHO05D005804 1.0e-72 277.3 221 63.3
HPP92_012260 Vanilla planifolia HOM05D004605 ORTHO05D005804 2.2e-72 276.2 211 60.7
CARHR263630 Cardamine hirsuta HOM05D004605 ORTHO05D005804 2.9e-72 275.8 209 61.7
Aqoxy3G03716 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 5.0e-72 275.0 220 59.1
Eucgr.I02062 Eucalyptus grandis HOM05D004605 ORTHO05D005804 1.1e-71 273.9 249 56.6
Aqoxy3G03714 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 3.2e-71 272.3 209 58.9
EL10Ac2g04442 Beta vulgaris HOM05D004605 ORTHO05D005804 1.4e-69 266.9 216 58.3
ATR0827G055 Amborella trichopoda HOM05D004605 ORTHO05D005804 3.0e-69 265.8 216 57.4
SMO223G0030 Selaginella moellendorffii HOM05D004605 ORTHO05D005804 3.0e-69 265.8 207 59.4
Mapoly0001s0057 Marchantia polymorpha HOM05D004605 ORTHO05D005804 5.2e-69 265.0 210 55.7
MSTRG.15436 Avicennia marina HOM05D004605 ORTHO05D005804 4.4e-68 261.9 197 59.9
AUR62023160 Chenopodium quinoa HOM05D004605 ORTHO05D005804 2.8e-67 259.2 210 62.4
RcHm_v2.0_Chr2g0164911 Rosa chinensis HOM05D004605 ORTHO05D005804 4.1e-66 255.4 213 59.2
MBI16_g34534_MAGBIO Magnolia biondii HOM05D004605 ORTHO05D005804 1.2e-65 253.8 214 57.0
FvH4_6g46370 Fragaria vesca HOM05D004605 ORTHO05D005804 5.9e-65 251.5 213 57.7
Sc10g0000600 Simmondsia chinensis HOM05D004605 ORTHO05D005804 7.2e-63 244.6 172 66.9
vmacro18128 Vaccinium macrocarpon HOM05D004605 ORTHO05D005804 3.6e-62 242.3 204 57.8
Pp3c14_20450 Physcomitrium patens HOM05D004605 ORTHO05D005804 2.3e-61 239.6 207 51.7
Eucgr.B03744 Eucalyptus grandis HOM05D004605 ORTHO05D005804 1.5e-60 236.9 198 57.6
FAN02G1482 Fragaria x ananassa HOM05D004605 ORTHO05D005804 1.5e-60 236.9 213 54.9
arahy.Tifrunner.gnm1.ann1.XASR8W Arachis hypogaea HOM05D004605 ORTHO05D005804 3.1e-58 229.2 196 58.2
Eucgr.L00721 Eucalyptus grandis HOM05D004605 ORTHO05D005804 3.1e-58 229.2 198 56.1
AUR62009481 Chenopodium quinoa HOM05D004605 ORTHO05D005804 2.5e-55 219.5 191 59.2
SEGI_21234 Sequoiadendron giganteum HOM05D004605 ORTHO05D005804 3.0e-53 212.6 205 47.3
QL02p053766 Quercus lobata HOM05D004605 ORTHO05D005804 2.0e-52 209.9 146 65.1
Cc07_g04470 Coffea canephora HOM05D004605 ORTHO05D005804 7.5e-52 208.0 144 63.9
FAN09G3310 Fragaria x ananassa HOM05D004605 ORTHO05D005804 8.3e-51 204.5 163 58.3
AUR62024435 Chenopodium quinoa HOM05D004605 ORTHO05D005804 1.4e-50 203.8 147 64.6
AagrBONN_evm.TU.Sc2ySwM_340.409 Anthoceros agrestis HOM05D004605 ORTHO05D005804 3.5e-49 199.1 187 49.2
AagrBONN_evm.TU.Sc2ySwM_340.410 Anthoceros agrestis HOM05D004605 ORTHO05D005804 3.5e-49 199.1 167 55.1
Cre12.g553700 Chlamydomonas reinhardtii HOM05D004605 ORTHO05D005804 5.9e-49 198.4 211 47.4
FAN05G1095 Fragaria x ananassa HOM05D004605 ORTHO05D005804 4.7e-46 188.7 208 48.6
Dinv33862 Davidia involucrata HOM05D004605 ORTHO05D005804 2.6e-44 183.0 129 64.3
Eucgr.L00305 Eucalyptus grandis HOM05D004605 ORTHO05D005804 2.7e-41 172.9 127 62.2
SalBow3G1842 Salvia bowleyana HOM05D004605 ORTHO05D005804 1.0e-37 161.0 201 44.8
Aqoxy3G03713 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 1.1e-34 151.0 108 67.6
CDE10G0487 Ceratophyllum demersum HOM05D004605 ORTHO05D005804 2.5e-31 139.8 111 62.2
Cfa025436 Carpinus fangiana HOM05D004605 ORTHO05D005804 3.2e-26 122.9 223 31.8
MCO08G262 Micromonas commoda HOM05D004605 ORTHO05D005804 9.2e-26 121.3 232 33.6
HPP92_012204 Vanilla planifolia HOM05D004605 ORTHO05D005804 1.7e-24 117.1 138 47.8
PSO591G0315 Papaver somniferum HOM05D004605 ORTHO05D005804 2.8e-22 109.8 66 65.2
Pp3s30_530 Physcomitrium patens HOM05D004605 ORTHO05D005804 2.8e-22 109.8 208 34.1
Nn4g23522 Nelumbo nucifera HOM05D004605 ORTHO05D005804 1.4e-21 107.5 71 71.8
Cc07_g04480 Coffea canephora HOM05D004605 ORTHO05D005804 8.9e-21 104.8 75 68.0
Mapoly0107s0018 Marchantia polymorpha HOM05D004605 ORTHO05D005804 7.5e-20 101.7 216 31.5
QL02p036101 Quercus lobata HOM05D004605 ORTHO05D005804 1.7e-19 100.5 119 44.5
QL10p049039 Quercus lobata HOM05D004605 ORTHO05D005804 1.7e-19 100.5 119 44.5
CBR_g36839 Chara braunii HOM05D004605 ORTHO05D005804 2.2e-19 100.1 223 29.1
QL10p051328 Quercus lobata HOM05D004605 ORTHO05D005804 6.4e-19 98.6 119 43.7
BolC3t14639H Brassica oleracea HOM05D004605 ORTHO05D005804 3.9e-16 89.4 62 58.1
SMO270G0021 Selaginella moellendorffii HOM05D004605 ORTHO05D005804 3.1e-13 79.7 203 28.6
Nn1g08579 Nelumbo nucifera HOM05D004605 ORTHO05D005804 1.5e-12 77.4 84 47.6
HPP92_012246 Vanilla planifolia HOM05D004605 ORTHO05D005804 7.6e-12 75.1 108 41.7
Cre12.g553650 Chlamydomonas reinhardtii HOM05D004605 ORTHO05D143570 9.9e-12 74.7 180 27.8
Nn1g08577 Nelumbo nucifera HOM05D004605 ORTHO05D005804 6.4e-11 72.0 41 70.7
Cre10.g464500 Chlamydomonas reinhardtii HOM05D004605 ORTHO05D005804 8.4e-11 71.6 221 25.3
Nn1g08580 Nelumbo nucifera HOM05D004605 ORTHO05D005804 2.1e-09 67.0 40 70.0
HanXRQChr04g0116811 Helianthus annuus HOM05D004605 ORTHO05D005804 5.1e-08 62.4 40 65.0
BolC3t14636H Brassica oleracea HOM05D004605 ORTHO05D032242 1.9e-07 60.5 82 42.7
BcaC01g05772 Brassica carinata HOM05D004605 ORTHO05D032242 5.6e-07 58.9 82 41.5
arahy.Tifrunner.gnm1.ann1.2EY802 Arachis hypogaea HOM05D004605 ORTHO05D005804 1.2e-06 57.8 48 56.2


User provided reference genes

Program Settings