Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0164911 Rosa chinensis HOM05D004605 ORTHO05D005804 3.1e-130 468.4 221 100.0
FvH4_6g46370 Fragaria vesca HOM05D004605 ORTHO05D005804 1.9e-111 406.0 221 85.1
FAN02G1482 Fragaria x ananassa HOM05D004605 ORTHO05D005804 4.0e-106 388.3 221 81.9
FAN14G2038 Fragaria x ananassa HOM05D004605 ORTHO05D005804 3.7e-99 365.2 221 79.2
FAN05G1095 Fragaria x ananassa HOM05D004605 ORTHO05D005804 6.3e-91 337.8 221 73.8
FAN09G3310 Fragaria x ananassa HOM05D004605 ORTHO05D005804 5.7e-84 314.7 173 83.8
Prupe.3G249000 Prunus persica HOM05D004605 ORTHO05D005804 2.7e-70 269.2 211 61.1
Prupe.3G249100 Prunus persica HOM05D004605 ORTHO05D005804 6.7e-69 264.6 213 61.5
MD09G1074300 Malus domestica HOM05D004605 ORTHO05D005804 1.7e-67 260.0 213 59.6
MD17G1065700 Malus domestica HOM05D004605 ORTHO05D005804 6.3e-67 258.1 213 59.2
FvH4_6g46390 Fragaria vesca HOM05D004605 ORTHO05D005804 3.1e-66 255.8 213 59.2
RcHm_v2.0_Chr2g0164921 Rosa chinensis HOM05D004605 ORTHO05D005804 5.3e-66 255.0 213 59.2
Atru.chr8.648 Acer truncatum HOM05D004605 ORTHO05D005804 2.9e-64 249.2 218 55.5
FAN05G4053 Fragaria x ananassa HOM05D004605 ORTHO05D005804 1.1e-63 247.3 221 55.7
Medtr7g016650 Medicago truncatula HOM05D004605 ORTHO05D005804 1.5e-63 246.9 212 56.6
arahy.Tifrunner.gnm1.ann1.M6S7AL Arachis hypogaea HOM05D004605 ORTHO05D005804 1.9e-63 246.5 222 55.0
arahy.Tifrunner.gnm1.ann1.90K79T Arachis hypogaea HOM05D004605 ORTHO05D005804 2.5e-63 246.1 222 55.0
GSVIVG01036547001 Vitis vinifera HOM05D004605 ORTHO05D005804 3.6e-62 242.3 219 54.8
Hund16233 Selenicereus undatus HOM05D004605 ORTHO05D005804 8.0e-62 241.1 222 51.8
Cfa007695 Carpinus fangiana HOM05D004605 ORTHO05D005804 1.0e-61 240.7 213 56.3
Lj1g0025970 Lotus japonicus HOM05D004605 ORTHO05D005804 1.4e-61 240.4 212 55.7
Glyma.18G273900 Glycine max HOM05D004605 ORTHO05D005804 1.8e-61 240.0 212 55.2
Manes.02G059400 Manihot esculenta HOM05D004605 ORTHO05D005804 4.0e-61 238.8 212 53.3
ECA238G2860 Erigeron canadensis HOM05D004605 ORTHO05D005804 5.2e-61 238.4 212 51.9
Gohir.D07G186600 Gossypium hirsutum HOM05D004605 ORTHO05D005804 5.2e-61 238.4 222 52.7
Gorai.001G207200 Gossypium raimondii HOM05D004605 ORTHO05D005804 5.2e-61 238.4 222 52.7
Thecc.04G106100 Theobroma cacao HOM05D004605 ORTHO05D005804 5.2e-61 238.4 222 53.2
VMungo1383G2960 Vigna mungo HOM05D004605 ORTHO05D005804 8.8e-61 237.7 210 54.3
Gohir.A07G179800 Gossypium hirsutum HOM05D004605 ORTHO05D005804 1.1e-60 237.3 222 52.7
Lalb_Chr10g0092731 Lupinus albus HOM05D004605 ORTHO05D005804 1.1e-60 237.3 212 56.1
Haze_14382 Corylus avellana HOM05D004605 ORTHO05D005804 3.3e-60 235.7 213 55.9
Ciclev10012619m.g Citrus clementina HOM05D004605 ORTHO05D005804 5.7e-60 235.0 212 52.4
Phvul.008G026800 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 2.2e-59 233.0 210 53.3
Phvul.008G027000 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 2.2e-59 233.0 210 53.8
QL02p065873 Quercus lobata HOM05D004605 ORTHO05D005804 2.2e-59 233.0 207 54.6
Sed0020846 Sechium edule HOM05D004605 ORTHO05D005804 2.2e-59 233.0 212 52.8
Phvul.008G027600 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 2.8e-59 232.6 210 54.8
COL.COLO4_10258 Corchorus olitorius HOM05D004605 ORTHO05D005804 4.8e-59 231.9 212 52.8
Manes.01G103400 Manihot esculenta HOM05D004605 ORTHO05D005804 6.3e-59 231.5 212 53.3
MELO3C026298.2 Cucumis melo HOM05D004605 ORTHO05D005804 8.2e-59 231.1 212 53.8
Hma1.2p1_0474F.1_g160750 Hydrangea macrophylla HOM05D004605 ORTHO05D005804 8.2e-59 231.1 209 53.6
Actinidia26268 Actinidia chinensis HOM05D004605 ORTHO05D005804 1.4e-58 230.3 209 51.7
Glyma.08G251200 Glycine max HOM05D004605 ORTHO05D005804 1.4e-58 230.3 210 53.8
Peaxi162Scf00020g10235 Petunia axillaris HOM05D004605 ORTHO05D005804 1.4e-58 230.3 210 51.4
VMungo1383G3490 Vigna mungo HOM05D004605 ORTHO05D005804 1.4e-58 230.3 210 53.8
Psat3g203400 Pisum sativum HOM05D004605 ORTHO05D005804 1.8e-58 229.9 212 51.9
CsaV3_4G010080 Cucumis sativus L. HOM05D004605 ORTHO05D005804 3.1e-58 229.2 212 53.3
Potri.017G100000 Populus trichocarpa HOM05D004605 ORTHO05D005804 3.1e-58 229.2 212 51.9
SGA_v2.0_scaffold148G36445 Striga asiatica HOM05D004605 ORTHO05D005804 4.1e-58 228.8 209 52.2
ClCG07G016040 Citrullus lanatus HOM05D004605 ORTHO05D005804 5.3e-58 228.4 212 52.4
Rhsim08G0077200 Rhododendron simsii HOM05D004605 ORTHO05D005804 5.3e-58 228.4 209 52.6
Lju361C6G5 Lonicera japonica HOM05D004605 ORTHO05D005804 7.0e-58 228.0 209 51.2
CSS0024904 Camellia sinensis var. sinensis HOM05D004605 ORTHO05D005804 1.2e-57 227.3 209 50.7
Ca_06902_v3 Cicer arietinum L. HOM05D004605 ORTHO05D005804 1.2e-57 227.3 212 52.8
Duzib133G0947 Durio zibethinus HOM05D004605 ORTHO05D005804 1.2e-57 227.3 212 51.4
Duzib138G1714 Durio zibethinus HOM05D004605 ORTHO05D005804 1.2e-57 227.3 212 51.9
PGSC0003DMG400001379 Solanum tuberosum HOM05D004605 ORTHO05D005804 1.6e-57 226.9 210 51.9
Nitab4.5_0001339g0150 Nicotiana tabacum HOM05D004605 ORTHO05D005804 2.7e-57 226.1 210 51.0
TWI60G1007 Tripterygium wilfordii HOM05D004605 ORTHO05D005804 2.7e-57 226.1 212 52.8
Cpa.g.sc14.228 Carica papaya HOM05D004605 ORTHO05D005804 3.5e-57 225.7 207 52.7
Oeu031839.1 Olea europaea HOM05D004605 ORTHO05D005804 4.5e-57 225.3 209 51.2
CAN.G497.71 Capsicum annuum HOM05D004605 ORTHO05D005804 5.9e-57 224.9 210 51.0
Sopen02g034020 Solanum pennellii HOM05D004605 ORTHO05D005804 5.9e-57 224.9 210 51.0
TAR629G2115 Trochodendron aralioides HOM05D004605 ORTHO05D005804 7.7e-57 224.6 204 52.5
CiPaw.03G083000 Carya illinoinensis HOM05D004605 ORTHO05D005804 1.0e-56 224.2 212 51.9
HanXRQChr14g0452481 Helianthus annuus HOM05D004605 ORTHO05D005804 1.3e-56 223.8 212 50.5
Solyc02g089230.3 Solanum lycopersicum HOM05D004605 ORTHO05D005804 1.3e-56 223.8 210 51.0
CANSAT64G2231 Cannabis sativa HOM05D004605 ORTHO05D005804 1.7e-56 223.4 211 51.2
Sabra17G0086200 Salix brachista HOM05D004605 ORTHO05D005804 1.7e-56 223.4 222 49.1
CiPaw.03G083100 Carya illinoinensis HOM05D004605 ORTHO05D005804 2.2e-56 223.0 212 51.4
SalBow1G3999 Salvia bowleyana HOM05D004605 ORTHO05D005804 2.9e-56 222.6 209 50.7
TPR.G23408 Trifolium pratense HOM05D004605 ORTHO05D005804 3.8e-56 222.2 212 52.4
Nitab4.5_0007530g0010 Nicotiana tabacum HOM05D004605 ORTHO05D005804 6.5e-56 221.5 212 50.5
Migut.H00587 Erythranthe guttata HOM05D004605 ORTHO05D005804 8.5e-56 221.1 209 49.8
Aqoxy3G03715 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 1.9e-55 219.9 211 50.2
PSO675G6317 Papaver somniferum HOM05D004605 ORTHO05D005804 1.9e-55 219.9 210 49.5
Carub.0007s3694 Capsella rubella HOM05D004605 ORTHO05D005804 2.5e-55 219.5 220 48.6
Aqoxy3G03716 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 4.2e-55 218.8 211 51.7
AL7G51520 Arabidopsis lyrata HOM05D004605 ORTHO05D005804 5.5e-55 218.4 210 50.5
Thhalv10027927m.g Eutrema salsugineum HOM05D004605 ORTHO05D005804 5.5e-55 218.4 210 51.0
PSO732G0027 Papaver somniferum HOM05D004605 ORTHO05D005804 5.5e-55 218.4 209 50.2
THA.LOC104805526 Tarenaya hassleriana HOM05D004605 ORTHO05D005804 5.5e-55 218.4 212 50.5
Aqoxy3G03714 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 9.4e-55 217.6 211 50.2
BraA07t29690Z Brassica rapa HOM05D004605 ORTHO05D005804 9.4e-55 217.6 222 49.5
C06p18440 Brassica napus HOM05D004605 ORTHO05D005804 1.2e-54 217.2 222 50.0
DCAR_021425 Daucus carota HOM05D004605 ORTHO05D005804 1.2e-54 217.2 219 48.4
Aa31LG9G16810 Aethionema arabicum HOM05D004605 ORTHO05D005804 2.1e-54 216.5 215 49.3
AT5G38900 Arabidopsis thaliana HOM05D004605 ORTHO05D005804 2.7e-54 216.1 220 47.7
BcaB02g07994 Brassica carinata HOM05D004605 ORTHO05D005804 2.7e-54 216.1 222 49.1
A07p19860 Brassica napus HOM05D004605 ORTHO05D005804 2.7e-54 216.1 222 49.1
BcaC08g44406 Brassica carinata HOM05D004605 ORTHO05D005804 6.1e-54 214.9 222 49.5
BolC6t37056H Brassica oleracea HOM05D004605 ORTHO05D005804 6.1e-54 214.9 222 49.5
Lsat_1_v5_gn_2_90241 Lactuca sativa HOM05D004605 ORTHO05D005804 6.1e-54 214.9 212 49.5
CARHR263630 Cardamine hirsuta HOM05D004605 ORTHO05D005804 6.8e-53 211.5 210 49.0
Sp7g03000 Schrenkiella parvula HOM05D004605 ORTHO05D005804 1.2e-52 210.7 210 48.6
Zm00001eb219300 Zea mays HOM05D004605 ORTHO05D005804 2.6e-52 209.5 211 48.8
EL10Ac2g04442 Beta vulgaris HOM05D004605 ORTHO05D005804 9.8e-52 207.6 213 49.3
FAN02G3403 Fragaria x ananassa HOM05D004605 ORTHO05D005804 2.8e-51 206.1 162 60.5
Mapoly0001s0057 Marchantia polymorpha HOM05D004605 ORTHO05D005804 3.7e-51 205.7 206 45.6
MSTRG.15437 Avicennia marina HOM05D004605 ORTHO05D005804 8.3e-51 204.5 212 50.0
Zm00001eb049940 Zea mays HOM05D004605 ORTHO05D005804 1.2e-49 200.7 211 47.9
MSTRG.15436 Avicennia marina HOM05D004605 ORTHO05D005804 3.5e-49 199.1 186 50.0
HPP92_012260 Vanilla planifolia HOM05D004605 ORTHO05D005804 5.9e-49 198.4 212 46.2
ATR0827G055 Amborella trichopoda HOM05D004605 ORTHO05D005804 1.3e-48 197.2 211 46.9
Eucgr.I02062 Eucalyptus grandis HOM05D004605 ORTHO05D005804 2.2e-48 196.4 248 43.1
Os03g0598900 Oryza sativa ssp. japonica HOM05D004605 ORTHO05D005804 2.9e-48 196.1 211 46.4
Sc10g0000600 Simmondsia chinensis HOM05D004605 ORTHO05D005804 1.5e-47 193.7 179 52.0
SMO223G0030 Selaginella moellendorffii HOM05D004605 ORTHO05D005804 2.7e-46 189.5 208 44.2
MBI16_g34534_MAGBIO Magnolia biondii HOM05D004605 ORTHO05D005804 2.6e-44 183.0 207 46.4
AUR62023160 Chenopodium quinoa HOM05D004605 ORTHO05D005804 5.7e-44 181.8 201 47.3
Pp3c14_20450 Physcomitrium patens HOM05D004605 ORTHO05D005804 9.8e-44 181.0 209 44.5
arahy.Tifrunner.gnm1.ann1.XASR8W Arachis hypogaea HOM05D004605 ORTHO05D005804 1.8e-42 176.8 209 45.0
Eucgr.B03744 Eucalyptus grandis HOM05D004605 ORTHO05D005804 1.8e-42 176.8 198 46.5
SEGI_21234 Sequoiadendron giganteum HOM05D004605 ORTHO05D005804 2.7e-41 172.9 213 39.4
Eucgr.L00721 Eucalyptus grandis HOM05D004605 ORTHO05D005804 6.6e-40 168.3 198 45.5
vmacro18128 Vaccinium macrocarpon HOM05D004605 ORTHO05D005804 4.3e-39 165.6 186 45.7
FAN09G1153 Fragaria x ananassa HOM05D004605 ORTHO05D005804 1.8e-37 160.2 196 46.9
AUR62009481 Chenopodium quinoa HOM05D004605 ORTHO05D005804 9.8e-36 154.5 193 43.5
AagrBONN_evm.TU.Sc2ySwM_340.409 Anthoceros agrestis HOM05D004605 ORTHO05D005804 3.2e-34 149.4 188 40.4
QL02p053766 Quercus lobata HOM05D004605 ORTHO05D005804 1.2e-33 147.5 139 51.1
Cre12.g553700 Chlamydomonas reinhardtii HOM05D004605 ORTHO05D005804 4.6e-33 145.6 210 35.2
Cc07_g04470 Coffea canephora HOM05D004605 ORTHO05D005804 1.5e-31 140.6 140 47.1
SalBow3G1842 Salvia bowleyana HOM05D004605 ORTHO05D005804 1.9e-31 140.2 194 39.2
AUR62024435 Chenopodium quinoa HOM05D004605 ORTHO05D005804 2.5e-31 139.8 139 48.2
AagrBONN_evm.TU.Sc2ySwM_340.410 Anthoceros agrestis HOM05D004605 ORTHO05D005804 6.2e-30 135.2 174 39.1
Dinv33862 Davidia involucrata HOM05D004605 ORTHO05D005804 2.3e-29 133.3 126 48.4
Eucgr.L00305 Eucalyptus grandis HOM05D004605 ORTHO05D005804 1.9e-26 123.6 130 45.4
Aqoxy3G03713 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 3.5e-25 119.4 111 51.4
CDE10G0487 Ceratophyllum demersum HOM05D004605 ORTHO05D005804 1.5e-23 114.0 110 51.8
Cfa025436 Carpinus fangiana HOM05D004605 ORTHO05D005804 3.2e-18 96.3 221 27.1
Nn4g23522 Nelumbo nucifera HOM05D004605 ORTHO05D005804 2.3e-16 90.1 71 60.6
Cc07_g04480 Coffea canephora HOM05D004605 ORTHO05D005804 1.2e-14 84.3 70 57.1
PSO591G0315 Papaver somniferum HOM05D004605 ORTHO05D005804 1.2e-14 84.3 66 51.5
Pp3s30_530 Physcomitrium patens HOM05D004605 ORTHO05D005804 9.9e-12 74.7 207 25.1
BolC3t14639H Brassica oleracea HOM05D004605 ORTHO05D005804 2.2e-11 73.6 68 50.0
Mapoly0107s0018 Marchantia polymorpha HOM05D004605 ORTHO05D005804 1.4e-10 70.9 218 25.7
SMO270G0021 Selaginella moellendorffii HOM05D004605 ORTHO05D005804 1.4e-10 70.9 204 26.0
HPP92_012204 Vanilla planifolia HOM05D004605 ORTHO05D005804 2.1e-09 67.0 141 32.6
CBR_g36839 Chara braunii HOM05D004605 ORTHO05D005804 3.9e-08 62.8 206 24.3
QL02p036101 Quercus lobata HOM05D004605 ORTHO05D005804 4.3e-07 59.3 113 32.7
QL10p049039 Quercus lobata HOM05D004605 ORTHO05D005804 4.3e-07 59.3 113 32.7
BcaC01g05772 Brassica carinata HOM05D004605 ORTHO05D032242 7.3e-07 58.5 82 45.1
QL10p051328 Quercus lobata HOM05D004605 ORTHO05D005804 1.6e-06 57.4 113 31.9
BolC3t14636H Brassica oleracea HOM05D004605 ORTHO05D032242 2.1e-06 57.0 82 43.9
Cre12.g553650 Chlamydomonas reinhardtii HOM05D004605 ORTHO05D143570 2.1e-06 57.0 183 25.1
HanXRQChr04g0116811 Helianthus annuus HOM05D004605 ORTHO05D005804 2.1e-06 57.0 40 60.0
Nn1g08579 Nelumbo nucifera HOM05D004605 ORTHO05D005804 2.8e-06 56.6 75 42.7


User provided reference genes

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