Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0164851 Rosa chinensis HOM05D003991 ORTHO05D004883 0.0e+00 1484.9 789 100.0
FvH4_6g46350 Fragaria vesca HOM05D003991 ORTHO05D004883 0.0e+00 1417.9 789 95.3
FAN09G2010 Fragaria x ananassa HOM05D003991 ORTHO05D004883 0.0e+00 1412.5 789 94.8
FAN05G5440 Fragaria x ananassa HOM05D003991 ORTHO05D004883 0.0e+00 1405.6 804 92.3
FAN14G3680 Fragaria x ananassa HOM05D003991 ORTHO05D004883 0.0e+00 1405.6 803 93.4
FAN02G3988 Fragaria x ananassa HOM05D003991 ORTHO05D004883 0.0e+00 1389.0 803 92.4
Prupe.3G248800 Prunus persica HOM05D003991 ORTHO05D004883 0.0e+00 1372.5 794 90.4
MD17G1065900 Malus domestica HOM05D003991 ORTHO05D004883 0.0e+00 1363.6 794 89.8
MD09G1074500 Malus domestica HOM05D003991 ORTHO05D004883 0.0e+00 1342.4 794 89.0
CANSAT64G1645 Cannabis sativa HOM05D003991 ORTHO05D004883 0.0e+00 1218.8 804 80.3
Manes.01G103600 Manihot esculenta HOM05D003991 ORTHO05D004883 0.0e+00 1201.8 799 78.3
Ciclev10011098m.g Citrus clementina HOM05D003991 ORTHO05D004883 0.0e+00 1198.3 801 78.2
TWI34G0665 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 0.0e+00 1197.2 794 78.3
Manes.02G059600 Manihot esculenta HOM05D003991 ORTHO05D004883 0.0e+00 1195.6 794 78.1
TWI32G1311 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 0.0e+00 1190.6 800 78.4
Atru.chr8.642 Acer truncatum HOM05D003991 ORTHO05D004883 0.0e+00 1185.2 800 80.2
Gorai.001G207000 Gossypium raimondii HOM05D003991 ORTHO05D004883 0.0e+00 1182.5 802 78.2
COL.COLO4_10252 Corchorus olitorius HOM05D003991 ORTHO05D004883 0.0e+00 1181.4 808 77.6
Cfa007697 Carpinus fangiana HOM05D003991 ORTHO05D004883 0.0e+00 1177.2 789 78.8
Potri.017G100300 Populus trichocarpa HOM05D003991 ORTHO05D004883 0.0e+00 1176.4 804 77.6
Duzib138G0045 Durio zibethinus HOM05D003991 ORTHO05D004883 0.0e+00 1175.2 814 76.2
Eucgr.I02064 Eucalyptus grandis HOM05D003991 ORTHO05D004883 0.0e+00 1173.7 792 77.9
CiPaw.03G082800 Carya illinoinensis HOM05D003991 ORTHO05D004883 0.0e+00 1170.6 785 79.2
Haze_14380 Corylus avellana HOM05D003991 ORTHO05D004883 0.0e+00 1161.7 863 73.2
Potri.004G114600 Populus trichocarpa HOM05D003991 ORTHO05D004883 0.0e+00 1161.4 799 76.6
Hma1.2p1_1837F.1_g304750 Hydrangea macrophylla HOM05D003991 ORTHO05D004883 0.0e+00 1157.9 815 76.2
Lj4A124G55 Lonicera japonica HOM05D003991 ORTHO05D004883 0.0e+00 1156.4 796 76.3
MELO3C026296.2 Cucumis melo HOM05D003991 ORTHO05D004883 0.0e+00 1154.0 805 76.8
Duzib133G0226 Durio zibethinus HOM05D003991 ORTHO05D004883 0.0e+00 1150.2 808 75.9
PGR004G0075 Punica granatum HOM05D003991 ORTHO05D004883 0.0e+00 1149.4 789 77.4
CsaV3_4G010070 Cucumis sativus L. HOM05D003991 ORTHO05D004883 0.0e+00 1147.1 804 76.6
VMungo1383G3466 Vigna mungo HOM05D003991 ORTHO05D004883 0.0e+00 1144.0 796 75.5
vmacro18126 Vaccinium macrocarpon HOM05D003991 ORTHO05D004883 0.0e+00 1142.1 848 72.2
Phvul.008G026400 Phaseolus vulgaris HOM05D003991 ORTHO05D004883 0.0e+00 1137.1 799 75.1
Cpa.g.sc541.1 Carica papaya HOM05D003991 ORTHO05D004883 0.0e+00 1135.6 754 79.0
Sed0026923 Sechium edule HOM05D003991 ORTHO05D004883 0.0e+00 1135.6 802 75.7
Ca_06908_v3 Cicer arietinum L. HOM05D003991 ORTHO05D004883 0.0e+00 1128.6 800 74.4
Lj1g0022443 Lotus japonicus HOM05D003991 ORTHO05D004883 0.0e+00 1127.9 795 75.3
TAR622G0714 Trochodendron aralioides HOM05D003991 ORTHO05D004883 0.0e+00 1127.5 805 74.3
CSS0001564 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 0.0e+00 1127.1 805 74.3
TPR.G23393 Trifolium pratense HOM05D003991 ORTHO05D004883 0.0e+00 1125.9 794 73.8
Psat3g203280 Pisum sativum HOM05D003991 ORTHO05D004883 0.0e+00 1122.1 789 73.5
Glyma.18G274100 Glycine max HOM05D003991 ORTHO05D004883 0.0e+00 1121.7 800 74.6
Lalb_Chr10g0092711 Lupinus albus HOM05D003991 ORTHO05D004883 0.0e+00 1118.6 797 74.7
Glyma.08G251400 Glycine max HOM05D003991 ORTHO05D004883 0.0e+00 1115.5 798 74.2
DCAR_011017 Daucus carota HOM05D003991 ORTHO05D004883 0.0e+00 1114.0 800 73.5
ClCG07G016050 Citrullus lanatus HOM05D003991 ORTHO05D004883 0.0e+00 1113.6 849 72.0
THA.LOC104822745 Tarenaya hassleriana HOM05D003991 ORTHO05D004883 0.0e+00 1112.8 802 75.4
AL7G51550 Arabidopsis lyrata HOM05D003991 ORTHO05D004883 0.0e+00 1106.7 796 73.6
AT5G38880 Arabidopsis thaliana HOM05D003991 ORTHO05D004883 0.0e+00 1106.3 796 73.6
Sabra17G0086400 Salix brachista HOM05D003991 ORTHO05D004883 0.0e+00 1104.0 899 68.6
Carub.0007s3697 Capsella rubella HOM05D003991 ORTHO05D004883 0.0e+00 1103.2 795 73.3
Aa31LG2G3750 Aethionema arabicum HOM05D003991 ORTHO05D004883 0.0e+00 1098.2 784 74.2
Nn4g23516 Nelumbo nucifera HOM05D003991 ORTHO05D004883 0.0e+00 1097.8 801 73.0
Lsat_1_v5_gn_3_96860 Lactuca sativa HOM05D003991 ORTHO05D004883 0.0e+00 1097.4 809 71.2
Rhsim08G0077400 Rhododendron simsii HOM05D003991 ORTHO05D004883 0.0e+00 1093.6 823 70.4
Thhalv10003675m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 0.0e+00 1092.8 786 74.0
Medtr7g016900 Medicago truncatula HOM05D003991 ORTHO05D004883 0.0e+00 1092.4 796 72.6
Sp2g18130 Schrenkiella parvula HOM05D003991 ORTHO05D004883 0.0e+00 1088.9 785 73.8
arahy.Tifrunner.gnm1.ann1.YA99EJ Arachis hypogaea HOM05D003991 ORTHO05D004883 0.0e+00 1087.4 793 73.9
MBI17_g07944_MAGBIO Magnolia biondii HOM05D003991 ORTHO05D004883 0.0e+00 1080.9 808 70.4
SGA_v2.0_scaffold148G36448 Striga asiatica HOM05D003991 ORTHO05D004883 0.0e+00 1078.5 797 71.3
Thhalv10027646m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 0.0e+00 1077.8 791 72.4
BcaC06g30850 Brassica carinata HOM05D003991 ORTHO05D004883 0.0e+00 1076.2 785 73.5
A06p39740 Brassica napus HOM05D003991 ORTHO05D004883 5.4e-312 1074.3 784 73.0
BraA06t26889Z Brassica rapa HOM05D003991 ORTHO05D004883 5.4e-312 1074.3 784 73.0
HanXRQChr02g0043871 Helianthus annuus HOM05D003991 ORTHO05D004883 1.1e-311 1072.8 794 71.3
BcaC06g33715 Brassica carinata HOM05D003991 ORTHO05D004883 2.7e-311 1071.6 782 73.0
C07p38530 Brassica napus HOM05D003991 ORTHO05D004883 8.1e-311 1070.1 782 72.9
BolC7t44375H Brassica oleracea HOM05D003991 ORTHO05D004883 8.1e-311 1070.1 782 72.9
Nitab4.5_0000154g0150 Nicotiana tabacum HOM05D003991 ORTHO05D004883 1.8e-310 1068.9 790 71.5
GSVIVG01036544001 Vitis vinifera HOM05D003991 ORTHO05D004883 1.8e-310 1068.9 791 73.5
arahy.Tifrunner.gnm1.ann1.T6I3L8 Arachis hypogaea HOM05D003991 ORTHO05D004883 4.1e-310 1067.8 816 71.9
MSTRG.2973 Avicennia marina HOM05D003991 ORTHO05D004883 7.0e-310 1067.0 793 70.7
PSO063G1675 Papaver somniferum HOM05D003991 ORTHO05D004883 5.9e-309 1063.9 807 69.9
Cc07_g04500 Coffea canephora HOM05D003991 ORTHO05D004883 1.7e-308 1062.4 806 70.6
PSO782G2666 Papaver somniferum HOM05D003991 ORTHO05D004883 1.7e-308 1062.4 806 69.6
Peaxi162Scf01002g00121 Petunia axillaris HOM05D003991 ORTHO05D004883 1.1e-307 1059.7 793 70.7
Sopen03g010790 Solanum pennellii HOM05D003991 ORTHO05D004883 2.5e-307 1058.5 803 70.1
EL10Ac2g04440 Beta vulgaris HOM05D003991 ORTHO05D004883 5.5e-307 1057.4 805 69.8
TAR374G0063 Trochodendron aralioides HOM05D003991 ORTHO05D004883 3.0e-305 1051.6 761 73.5
SalBow1G2342 Salvia bowleyana HOM05D003991 ORTHO05D004883 9.7e-304 1046.6 793 70.1
CAN.G427.3 Capsicum annuum HOM05D003991 ORTHO05D004883 2.2e-303 1045.4 803 68.9
AUR62009479 Chenopodium quinoa HOM05D003991 ORTHO05D004883 6.3e-303 1043.9 796 69.5
Migut.O00382 Erythranthe guttata HOM05D003991 ORTHO05D004883 4.5e-301 1037.7 795 69.7
ATR0605G126 Amborella trichopoda HOM05D003991 ORTHO05D004883 7.7e-301 1036.9 799 69.2
Thecc.04G106400 Theobroma cacao HOM05D003991 ORTHO05D004883 7.7e-301 1036.9 646 83.0
Hund13674 Selenicereus undatus HOM05D003991 ORTHO05D004883 1.0e-300 1036.6 788 68.9
Solyc03g046590.3 Solanum lycopersicum HOM05D003991 ORTHO05D004883 8.5e-300 1033.5 803 68.6
Gohir.A07G179600 Gossypium hirsutum HOM05D003991 ORTHO05D004883 2.0e-296 1022.3 646 82.4
Gohir.D07G186400 Gossypium hirsutum HOM05D003991 ORTHO05D004883 3.7e-295 1018.1 646 82.2
CiPaw.04G052100 Carya illinoinensis HOM05D003991 ORTHO05D004883 1.4e-294 1016.1 797 70.3
AUR62023158 Chenopodium quinoa HOM05D003991 ORTHO05D004883 9.1e-294 1013.4 782 69.1
ECA246G2054 Erigeron canadensis HOM05D003991 ORTHO05D004883 8.0e-290 1000.3 800 67.1
unitig_748.g8415 Utricularia gibba HOM05D003991 ORTHO05D004883 8.3e-287 990.3 790 67.3
C09p04400 Brassica napus HOM05D003991 ORTHO05D004883 1.8e-286 989.2 781 69.1
BraA09t36055Z Brassica rapa HOM05D003991 ORTHO05D004883 5.4e-286 987.6 781 68.8
BolC9t53370H Brassica oleracea HOM05D003991 ORTHO05D004883 4.0e-281 971.5 781 68.5
Lsat_1_v5_gn_2_90201 Lactuca sativa HOM05D003991 ORTHO05D004883 1.2e-280 969.9 802 65.5
Ah.16g101030 Amaranthus hybridus HOM05D003991 ORTHO05D004883 1.1e-278 963.4 781 66.2
A09p04180 Brassica napus HOM05D003991 ORTHO05D004883 3.5e-277 958.4 782 67.4
Nitab4.5_0001434g0090 Nicotiana tabacum HOM05D003991 ORTHO05D004883 3.3e-275 951.8 801 65.3
Oeu007082.1 Olea europaea HOM05D003991 ORTHO05D004883 7.3e-275 950.7 842 62.6
BcaC04g23813 Brassica carinata HOM05D003991 ORTHO05D004883 6.0e-269 931.0 783 66.3
CDE06G2000 Ceratophyllum demersum HOM05D003991 ORTHO05D004883 3.0e-268 928.7 805 60.9
Aqoxy3G03722 Aquilegia oxysepala HOM05D003991 ORTHO05D004883 5.0e-268 927.9 782 65.2
SEGI_18103 Sequoiadendron giganteum HOM05D003991 ORTHO05D004883 2.1e-253 879.4 811 58.9
CSS0050035 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 5.6e-251 871.3 718 68.2
HanXRQChr07g0200011 Helianthus annuus HOM05D003991 ORTHO05D004883 7.3e-251 870.9 812 58.1
HPP92_025879 Vanilla planifolia HOM05D003991 ORTHO05D004883 4.7e-250 868.2 800 57.5
ECA238G0416 Erigeron canadensis HOM05D003991 ORTHO05D004883 7.1e-246 854.4 791 58.8
BcaC04g23825 Brassica carinata HOM05D003991 ORTHO05D004883 3.3e-227 792.3 640 68.3
Sc11g0008820 Simmondsia chinensis HOM05D003991 ORTHO05D004883 2.5e-219 766.1 647 65.2
SMO147G0301 Selaginella moellendorffii HOM05D003991 ORTHO05D004883 1.2e-208 730.7 801 50.7
Actinidia26270 Actinidia chinensis HOM05D003991 ORTHO05D004883 2.5e-206 723.0 480 78.8
Pp3c9_9760 Physcomitrium patens HOM05D003991 ORTHO05D004883 1.9e-190 670.2 850 46.7
Pp3c9_9870 Physcomitrium patens HOM05D003991 ORTHO05D004883 1.9e-190 670.2 850 46.7
Mapoly0016s0130 Marchantia polymorpha HOM05D003991 ORTHO05D004883 1.8e-180 637.1 870 44.1
ECA285G0010 Erigeron canadensis HOM05D003991 ORTHO05D004883 1.0e-175 621.3 615 57.4
Pp3c15_7610 Physcomitrium patens HOM05D003991 ORTHO05D004883 3.8e-175 619.4 845 44.4
Zm00001eb311840 Zea mays HOM05D003991 ORTHO05D004883 3.4e-171 606.3 459 68.4
MBI17_g36999_MAGBIO Magnolia biondii HOM05D003991 ORTHO05D004883 2.8e-170 603.2 526 63.3
Pp3c10_8720 Physcomitrium patens HOM05D003991 ORTHO05D004883 1.3e-167 594.3 647 51.8
Os09g0386600 Oryza sativa ssp. japonica HOM05D003991 ORTHO05D004883 2.0e-163 580.5 434 69.6
AagrBONN_evm.TU.Sc2ySwM_344.1887 Anthoceros agrestis HOM05D003991 ORTHO05D004883 2.2e-162 577.0 828 42.9
Zm00001eb099080 Zea mays HOM05D003991 ORTHO05D004883 3.6e-157 559.7 594 54.9
CARHR263670 Cardamine hirsuta HOM05D003991 ORTHO05D004883 1.4e-137 494.6 401 68.1
BcaB04g19523 Brassica carinata HOM05D003991 ORTHO05D004883 8.1e-117 425.6 596 47.8
BcaC04g23815 Brassica carinata HOM05D003991 ORTHO05D004883 2.8e-101 374.0 453 52.5
Dinv33866 Davidia involucrata HOM05D003991 ORTHO05D004883 1.8e-84 318.2 212 79.2
Aa31LG1G6630 Aethionema arabicum HOM05D003991 ORTHO05D004883 4.2e-81 307.0 690 36.8
CBR_g36314 Chara braunii HOM05D003991 ORTHO05D004883 2.0e-78 298.1 769 31.9
arahy.Tifrunner.gnm1.ann1.VU455X Arachis hypogaea HOM05D003991 ORTHO05D004883 3.5e-75 287.3 207 72.0
arahy.Tifrunner.gnm1.ann1.994D9I Arachis hypogaea HOM05D003991 ORTHO05D004883 3.6e-72 277.3 197 72.6
arahy.Tifrunner.gnm1.ann1.52AFQE Arachis hypogaea HOM05D003991 ORTHO05D004883 6.1e-72 276.6 197 72.6
arahy.Tifrunner.gnm1.ann1.YE0A4T Arachis hypogaea HOM05D003991 ORTHO05D004883 6.1e-72 276.6 197 72.6
Dinv33867 Davidia involucrata HOM05D003991 ORTHO05D004883 9.7e-70 269.2 210 66.2
Sp7g03030 Schrenkiella parvula HOM05D003991 ORTHO05D004883 1.1e-65 255.8 236 61.0
BcaC04g23820 Brassica carinata HOM05D003991 ORTHO05D004883 1.4e-60 238.8 472 39.6
SMO147G0173 Selaginella moellendorffii HOM05D003991 ORTHO05D004883 3.1e-60 237.7 448 38.6
MD09G1075300 Malus domestica HOM05D003991 ORTHO05D004883 2.7e-59 234.6 121 90.1
BcaC04g23819 Brassica carinata HOM05D003991 ORTHO05D004883 7.3e-49 199.9 794 28.2
Dinv33865 Davidia involucrata HOM05D003991 ORTHO05D004883 1.8e-47 195.3 131 77.1
HPP92_006579 Vanilla planifolia HOM05D003991 ORTHO05D004883 2.8e-40 171.4 199 51.3
CSS0000762 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 4.4e-38 164.1 86 82.6
CSS0038698 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 4.4e-38 164.1 86 82.6
Sc11g0008830 Simmondsia chinensis HOM05D003991 ORTHO05D004883 7.1e-36 156.8 92 78.3
HPP92_006533 Vanilla planifolia HOM05D003991 ORTHO05D004883 3.4e-30 137.9 348 31.0
SMO147G0397 Selaginella moellendorffii HOM05D003991 ORTHO05D050858 3.7e-29 134.4 142 50.0
HPP92_026595 Vanilla planifolia HOM05D003991 ORTHO05D004883 1.7e-26 125.6 118 55.1
BcaC04g23821 Brassica carinata HOM05D003991 ORTHO05D004883 5.6e-25 120.6 89 62.9
arahy.Tifrunner.gnm1.ann1.Q8CATI Arachis hypogaea HOM05D003991 ORTHO05D004883 4.7e-24 117.5 75 84.0
BcaB04g19526 Brassica carinata HOM05D003991 ORTHO05D004883 4.9e-21 107.5 74 70.3
HPP92_028205 Vanilla planifolia HOM05D003991 ORTHO05D004883 1.1e-20 106.3 149 40.3
Medtr7g008870 Medicago truncatula HOM05D003991 ORTHO05D004883 9.3e-20 103.2 71 67.6
Cfa002005 Carpinus fangiana HOM05D003991 ORTHO05D009743 1.7e-18 99.0 57 89.5
HPP92_026934 Vanilla planifolia HOM05D003881 ORTHO05D004343 3.0e-18 98.2 84 60.7
HPP92_026824 Vanilla planifolia HOM05D003991 ORTHO05D004883 8.7e-18 96.7 107 50.5
Cfa020174 Carpinus fangiana HOM05D003991 ORTHO05D004883 4.8e-16 90.9 95 54.7
Medtr7g051850 Medicago truncatula HOM05D003991 ORTHO05D004883 1.8e-15 89.0 57 70.2
HPP92_028494 Vanilla planifolia HOM05D003991 ORTHO05D004883 6.9e-15 87.0 137 42.3
Dinv33864 Davidia involucrata HOM05D003991 ORTHO05D004883 1.3e-13 82.8 109 49.5
Os11g0189900 Oryza sativa ssp. japonica HOM05D003991 ORTHO05D298446 7.1e-12 77.0 77 54.5
QL05p023649 Quercus lobata HOM05D003991 ORTHO05D004883 1.6e-11 75.9 52 80.8
SEGI_36661 Sequoiadendron giganteum HOM05D001164 ORTHO05D018381 3.5e-11 74.7 77 54.5
QL01p030546 Quercus lobata HOM05D003991 ORTHO05D004883 3.0e-10 71.6 50 80.0
QL05p049573 Quercus lobata HOM05D003991 ORTHO05D004883 1.5e-09 69.3 50 76.0
QL05p049558 Quercus lobata HOM05D003991 ORTHO05D004883 1.9e-09 68.9 65 64.6
BcaC04g23826 Brassica carinata HOM05D003991 ORTHO05D004883 2.1e-08 65.5 114 43.9
HPP92_027770 Vanilla planifolia HOM05D003991 ORTHO05D432268 2.1e-08 65.5 76 51.3
Oeu049880.1 Olea europaea HOM05D000526 ORTHO05D000956 2.4e-07 62.0 74 51.4
HPP92_027976 Vanilla planifolia HOM05D003991 ORTHO05D004883 3.1e-07 61.6 246 28.9
Lsat_1_v5_gn_6_82700 Lactuca sativa HOM05D003991 ORTHO05D232831 9.0e-07 60.1 68 48.5


User provided reference genes

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