Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0164461 Rosa chinensis HOM05D005847 ORTHO05D007143 5.0e-293 1010.4 513 100.0
FAN08G0147 Fragaria x ananassa HOM05D005847 ORTHO05D007143 6.2e-275 950.3 513 94.9
FAN13G1107 Fragaria x ananassa HOM05D005847 ORTHO05D007143 3.2e-271 937.9 514 94.4
FvH4_5g11440 Fragaria vesca HOM05D005847 ORTHO05D007143 9.2e-271 936.4 514 94.0
FAN04G0204 Fragaria x ananassa HOM05D005847 ORTHO05D007143 8.6e-269 929.9 514 93.2
FAN18G1068 Fragaria x ananassa HOM05D005847 ORTHO05D007143 1.1e-268 929.5 514 93.2
MD06G1113800 Malus domestica HOM05D005847 ORTHO05D007143 6.4e-248 860.5 512 83.2
MD14G1134800 Malus domestica HOM05D005847 ORTHO05D007143 1.6e-246 855.9 510 83.1
Prupe.5G126500 Prunus persica HOM05D005847 ORTHO05D007143 4.6e-246 854.4 510 83.7
QL10p008953 Quercus lobata HOM05D005847 ORTHO05D007143 1.3e-224 783.1 509 76.8
Cfa011951 Carpinus fangiana HOM05D005847 ORTHO05D007143 2.3e-221 772.3 514 75.5
Haze_09129 Corylus avellana HOM05D005847 ORTHO05D007143 6.7e-221 770.8 518 75.7
Manes.01G053800 Manihot esculenta HOM05D005847 ORTHO05D007143 3.7e-219 765.0 508 73.4
CiPaw.11G115200 Carya illinoinensis HOM05D005847 ORTHO05D007143 3.8e-216 755.0 515 74.6
Nn8g41240 Nelumbo nucifera HOM05D005847 ORTHO05D007143 5.0e-216 754.6 507 72.6
GSVIVG01019613001 Vitis vinifera HOM05D005847 ORTHO05D007143 2.7e-214 748.8 514 73.3
Atru.chr9.1922 Acer truncatum HOM05D005847 ORTHO05D007143 6.1e-214 747.7 513 72.3
TAR629G2252 Trochodendron aralioides HOM05D005847 ORTHO05D007143 1.0e-213 746.9 507 73.4
Potri.001G086800 Populus trichocarpa HOM05D005847 ORTHO05D007143 6.7e-213 744.2 507 72.6
Gohir.D12G239600 Gossypium hirsutum HOM05D005847 ORTHO05D007143 8.8e-213 743.8 506 72.3
Psat4g194080 Pisum sativum HOM05D005847 ORTHO05D007143 8.8e-213 743.8 514 72.4
Duzib084G0923 Durio zibethinus HOM05D005847 ORTHO05D007143 1.1e-212 743.4 510 73.5
CsaV3_5G001820 Cucumis sativus L. HOM05D005847 ORTHO05D007143 1.5e-212 743.0 510 71.8
Gorai.008G256700 Gossypium raimondii HOM05D005847 ORTHO05D007143 2.0e-212 742.7 506 72.1
CANSAT21G1860 Cannabis sativa HOM05D005847 ORTHO05D007143 2.6e-212 742.3 516 72.3
Sed0023920 Sechium edule HOM05D005847 ORTHO05D007143 2.6e-212 742.3 510 72.5
Ca_24013_v3 Cicer arietinum L. HOM05D005847 ORTHO05D007143 7.4e-212 740.7 516 72.9
VMungo1127G1163 Vigna mungo HOM05D005847 ORTHO05D007143 2.2e-211 739.2 525 69.7
Gohir.A12G238500 Gossypium hirsutum HOM05D005847 ORTHO05D007143 4.8e-211 738.0 506 71.7
Thecc.03G224700 Theobroma cacao HOM05D005847 ORTHO05D007143 1.4e-210 736.5 519 72.6
Ciclev10019764m.g Citrus clementina HOM05D005847 ORTHO05D007143 1.8e-210 736.1 514 72.4
PGR042G1950 Punica granatum HOM05D005847 ORTHO05D007143 5.3e-210 734.6 511 72.6
Lalb_Chr13g0298981 Lupinus albus HOM05D005847 ORTHO05D007143 1.2e-209 733.4 524 71.6
Phvul.011G200000 Phaseolus vulgaris HOM05D005847 ORTHO05D007143 3.8e-208 728.4 525 69.1
Lj2A159T44 Lonicera japonica HOM05D005847 ORTHO05D007143 1.9e-207 726.1 516 71.9
MELO3C005771.2 Cucumis melo HOM05D005847 ORTHO05D007143 3.2e-207 725.3 510 70.2
Eucgr.E01030 Eucalyptus grandis HOM05D005847 ORTHO05D007143 4.2e-207 724.9 508 71.1
Actinidia22190 Actinidia chinensis HOM05D005847 ORTHO05D007143 1.0e-205 720.3 506 70.6
Sopen08g031110 Solanum pennellii HOM05D005847 ORTHO05D007143 3.9e-205 718.4 509 70.5
ClCG01G001660 Citrullus lanatus HOM05D005847 ORTHO05D007143 5.2e-205 718.0 566 64.7
Glyma.13G191700 Glycine max HOM05D005847 ORTHO05D007143 1.5e-204 716.5 534 68.2
Solyc08g082880.4 Solanum lycopersicum HOM05D005847 ORTHO05D007143 1.5e-204 716.5 509 70.3
MBI12_g02092_MAGBIO Magnolia biondii HOM05D005847 ORTHO05D007143 2.2e-203 712.6 514 68.1
Medtr8g040700 Medicago truncatula HOM05D005847 ORTHO05D007143 8.2e-203 710.7 515 68.9
TWI81G0154 Tripterygium wilfordii HOM05D005847 ORTHO05D007143 9.1e-202 707.2 510 69.8
TPR.G8535 Trifolium pratense HOM05D005847 ORTHO05D007143 6.5e-200 701.0 489 71.8
CAN.G567.67 Capsicum annuum HOM05D005847 ORTHO05D007143 1.5e-199 699.9 509 69.5
Sc01g0010500 Simmondsia chinensis HOM05D005847 ORTHO05D007143 4.2e-199 698.4 508 67.3
Lj1g0001744 Lotus japonicus HOM05D005847 ORTHO05D007143 1.2e-198 696.8 602 61.3
EL10Ac5g12470 Beta vulgaris HOM05D005847 ORTHO05D007143 6.1e-198 694.5 511 66.5
COL.COLO4_10763 Corchorus olitorius HOM05D005847 ORTHO05D007143 1.3e-195 686.8 506 68.6
Cc08_g16520 Coffea canephora HOM05D005847 ORTHO05D007143 1.7e-195 686.4 499 68.9
Hund18289 Selenicereus undatus HOM05D005847 ORTHO05D007143 7.0e-194 681.0 509 66.2
PGSC0003DMG400012250 Solanum tuberosum HOM05D005847 ORTHO05D007143 2.2e-192 676.0 523 66.5
DCAR_006499 Daucus carota HOM05D005847 ORTHO05D007143 2.9e-192 675.6 507 67.5
Sabra01G0063100 Salix brachista HOM05D005847 ORTHO05D007143 5.5e-191 671.4 507 67.7
Aqoxy5G04298 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 2.1e-190 669.5 520 63.7
Peaxi162Scf00074g00363 Petunia axillaris HOM05D005847 ORTHO05D007143 2.1e-190 669.5 518 67.4
Aqoxy3G00691 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 6.1e-190 667.9 520 64.8
HanXRQChr13g0415001 Helianthus annuus HOM05D005847 ORTHO05D007143 6.8e-189 664.5 511 65.4
THA.LOC104809314 Tarenaya hassleriana HOM05D005847 ORTHO05D007143 9.1e-186 654.1 514 65.6
Os07g0297300 Oryza sativa ssp. japonica HOM05D005847 ORTHO05D007143 1.0e-181 640.6 520 61.7
Zm00001eb021260 Zea mays HOM05D005847 ORTHO05D007143 5.2e-181 638.3 521 62.0
PSO017G1852 Papaver somniferum HOM05D005847 ORTHO05D007143 9.8e-180 634.0 540 61.1
ECA240G1801 Erigeron canadensis HOM05D005847 ORTHO05D007143 2.9e-179 632.5 541 59.9
ATR0757G021 Amborella trichopoda HOM05D005847 ORTHO05D007143 6.4e-179 631.3 499 63.3
AL2G10160 Arabidopsis lyrata HOM05D005847 ORTHO05D007143 5.9e-177 624.8 516 63.6
HPP92_003273 Vanilla planifolia HOM05D005847 ORTHO05D007143 1.0e-176 624.0 520 60.8
AT1G64600 Arabidopsis thaliana HOM05D005847 ORTHO05D007143 2.9e-176 622.5 514 63.2
Carub.0002s0014 Capsella rubella HOM05D005847 ORTHO05D007143 3.9e-176 622.1 534 62.5
Aa31LG2G1600 Aethionema arabicum HOM05D005847 ORTHO05D007143 5.6e-175 618.2 531 62.0
CSS0040838 Camellia sinensis var. sinensis HOM05D005847 ORTHO05D007143 1.2e-174 617.1 395 77.7
arahy.Tifrunner.gnm1.ann1.PR6ST2 Arachis hypogaea HOM05D005847 ORTHO05D007143 4.7e-174 615.1 468 67.3
AUR62007027 Chenopodium quinoa HOM05D005847 ORTHO05D007143 6.2e-174 614.8 505 62.6
arahy.Tifrunner.gnm1.ann1.HI9AVU Arachis hypogaea HOM05D005847 ORTHO05D007143 1.5e-172 610.1 462 66.9
Sp2g00130 Schrenkiella parvula HOM05D005847 ORTHO05D007143 4.4e-172 608.6 523 61.8
Thhalv10023366m.g Eutrema salsugineum HOM05D005847 ORTHO05D007143 3.7e-171 605.5 568 58.1
vmacro11522 Vaccinium macrocarpon HOM05D005847 ORTHO05D007143 1.9e-170 603.2 558 59.0
Migut.E00656 Erythranthe guttata HOM05D005847 ORTHO05D007143 4.1e-170 602.1 544 57.2
BcaB07g31478 Brassica carinata HOM05D005847 ORTHO05D007143 1.3e-168 597.0 529 59.9
BraA09t37102Z Brassica rapa HOM05D005847 ORTHO05D007143 5.0e-168 595.1 522 60.3
BcaC04g22588 Brassica carinata HOM05D005847 ORTHO05D007143 6.6e-168 594.7 522 60.2
C09p17640 Brassica napus HOM05D005847 ORTHO05D007143 6.6e-168 594.7 522 60.2
BolC9t54656H Brassica oleracea HOM05D005847 ORTHO05D007143 6.6e-168 594.7 522 60.2
A09p14540 Brassica napus HOM05D005847 ORTHO05D007143 7.3e-167 591.3 522 60.0
SGA_v2.0_scaffold159G37696 Striga asiatica HOM05D005847 ORTHO05D007143 1.3e-160 570.5 511 57.3
AUR62019890 Chenopodium quinoa HOM05D005847 ORTHO05D007143 1.2e-156 557.4 403 67.5
Nitab4.5_0002728g0010 Nicotiana tabacum HOM05D005847 ORTHO05D007143 2.1e-153 546.6 365 75.1
unitig_21.g20386 Utricularia gibba HOM05D005847 ORTHO05D007143 4.0e-149 532.3 507 54.2
RcHm_v2.0_Chr7g0186411 Rosa chinensis HOM05D005847 ORTHO05D007143 2.0e-148 530.0 278 97.5
Lsat_1_v5_gn_6_83620 Lactuca sativa HOM05D005847 ORTHO05D007143 2.1e-145 520.0 350 74.3
RcHm_v2.0_Chr7g0186431 Rosa chinensis HOM05D005847 ORTHO05D007143 2.3e-128 463.4 236 99.2
Rhsim02G0249100 Rhododendron simsii HOM05D005847 ORTHO05D007143 1.6e-126 457.2 380 62.4
Oeu058016.1 Olea europaea HOM05D005847 ORTHO05D007143 1.6e-118 430.6 504 50.8
Nitab4.5_0006880g0020 Nicotiana tabacum HOM05D005847 ORTHO05D007143 1.0e-115 421.4 471 54.1
Ah.12g052990 Amaranthus hybridus HOM05D005847 ORTHO05D007143 9.7e-111 404.8 537 43.2
Mapoly0031s0174 Marchantia polymorpha HOM05D005847 ORTHO05D007143 2.0e-108 397.1 532 42.7
Pp3c9_6890 Physcomitrium patens HOM05D005847 ORTHO05D007143 3.6e-105 386.3 519 40.1
Nitab4.5_0002027g0040 Nicotiana tabacum HOM05D005847 ORTHO05D007143 3.3e-103 379.8 493 48.3
CDE04G1283 Ceratophyllum demersum HOM05D005847 ORTHO05D007143 2.5e-98 363.6 253 70.0
MSTRG.26906 Avicennia marina HOM05D005847 ORTHO05D007143 2.9e-91 340.1 253 66.8
SMO119G0297 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 1.5e-87 327.8 554 37.2
MSTRG.15574 Avicennia marina HOM05D005847 ORTHO05D007143 4.2e-82 309.7 267 58.1
QL10p010267 Quercus lobata HOM05D005847 ORTHO05D007143 6.3e-78 295.8 204 71.6
Cpa.g.sc15.20 Carica papaya HOM05D005847 ORTHO05D007143 4.5e-76 289.7 214 66.8
SHI06935 Sapria himalayana HOM05D005847 ORTHO05D007143 1.2e-73 281.6 464 39.2
Nn1g00324 Nelumbo nucifera HOM05D005847 ORTHO05D007143 2.8e-70 270.4 219 65.3
SMO115G0010 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 1.8e-64 251.1 260 45.8
RcHm_v2.0_Chr7g0205571 Rosa chinensis HOM05D005847 ORTHO05D007143 1.5e-63 248.1 248 59.7
CARHR046320 Cardamine hirsuta HOM05D005847 ORTHO05D007143 5.7e-63 246.1 227 57.3
AagrBONN_evm.TU.Sc2ySwM_228.3279 Anthoceros agrestis HOM05D005847 ORTHO05D007143 5.0e-59 233.0 230 49.1
Aqoxy5G04303 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 6.6e-59 232.6 225 55.6
SMO116G0437 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 3.7e-54 216.9 493 28.0
SEGI_09534 Sequoiadendron giganteum HOM05D005847 ORTHO05D007143 2.3e-48 197.6 182 55.5
RcHm_v2.0_Chr7g0205551 Rosa chinensis HOM05D005847 ORTHO05D007143 5.8e-47 193.0 259 48.6
CBR_g978 Chara braunii HOM05D005847 ORTHO05D007143 1.6e-41 174.9 295 36.6
Cpa.g.c33268 Carica papaya HOM05D005847 ORTHO05D007143 2.8e-41 174.1 150 58.0
CDE04G2319 Ceratophyllum demersum HOM05D005847 ORTHO05D007143 3.8e-38 163.7 186 46.8
MCO09G139 Micromonas commoda HOM05D005847 ORTHO05D007143 5.6e-34 149.8 497 27.6
Atru.chr1.1468 Acer truncatum HOM05D005847 ORTHO05D007143 1.0e-27 129.0 104 55.8
Cpa.g.sc15.22 Carica papaya HOM05D005847 ORTHO05D007143 8.7e-27 125.9 83 74.7
AUR62019891 Chenopodium quinoa HOM05D005847 ORTHO05D007143 9.0e-24 115.9 113 53.1
Cre05.g237600 Chlamydomonas reinhardtii HOM05D005847 ORTHO05D007143 9.0e-24 115.9 174 38.5
Nn1g00325 Nelumbo nucifera HOM05D005847 ORTHO05D007143 2.2e-22 111.3 102 57.8
Os10g0520950 Oryza sativa ssp. japonica HOM05D005847 ORTHO05D007143 4.6e-20 103.6 121 47.9
QL02p028460 Quercus lobata HOM05D005847 ORTHO05D007143 6.0e-20 103.2 126 48.4
Lj3g0011757 Lotus japonicus HOM05D005847 ORTHO05D007143 1.5e-18 98.6 190 38.4
Medtr8g040720 Medicago truncatula HOM05D005847 ORTHO05D007143 2.6e-15 87.8 53 66.0
QL02p028464 Quercus lobata HOM05D005847 ORTHO05D007143 1.6e-09 68.6 88 43.2
Nitab4.5_0000109g0320 Nicotiana tabacum HOM05D005847 ORTHO05D007143 1.5e-07 62.0 72 50.0
Medtr8g040530 Medicago truncatula HOM05D005847 ORTHO05D007143 1.3e-06 58.9 89 34.8


User provided reference genes

Program Settings