Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0164301 Rosa chinensis HOM05D005170 ORTHO05D006985 6.8e-78 293.9 146 100.0
RcHm_v2.0_Chr2g0164441 Rosa chinensis HOM05D005170 ORTHO05D006985 5.6e-48 194.5 120 86.7
RcHm_v2.0_Chr2g0164481 Rosa chinensis HOM05D005170 ORTHO05D006985 1.3e-47 193.4 120 85.8
FvH4_6g46110 Fragaria vesca HOM05D005170 ORTHO05D006985 2.1e-47 192.6 120 85.8
FAN14G1739 Fragaria x ananassa HOM05D005170 ORTHO05D006985 2.1e-47 192.6 120 85.8
FAN09G2425 Fragaria x ananassa HOM05D005170 ORTHO05D006985 2.8e-47 192.2 120 85.8
FAN05G5078 Fragaria x ananassa HOM05D005170 ORTHO05D006985 1.4e-43 179.9 121 82.6
FAN02G2580 Fragaria x ananassa HOM05D005170 ORTHO05D006985 1.7e-36 156.4 106 80.2
GSVIVG01036517001 Vitis vinifera HOM05D005170 ORTHO05D006985 9.1e-30 134.0 120 61.7
Prupe.3G247200 Prunus persica HOM05D005170 ORTHO05D006985 3.4e-29 132.1 120 62.5
MD09G1076900 Malus domestica HOM05D005170 ORTHO05D006985 8.5e-28 127.5 120 60.0
vmacro05605 Vaccinium macrocarpon HOM05D005170 ORTHO05D006985 2.1e-26 122.9 121 58.7
vmacro23470 Vaccinium macrocarpon HOM05D005170 ORTHO05D006985 2.1e-26 122.9 121 58.7
Actinidia18094 Actinidia chinensis HOM05D005170 ORTHO05D006985 4.7e-26 121.7 121 56.2
vmacro17105 Vaccinium macrocarpon HOM05D005170 ORTHO05D006985 6.1e-26 121.3 121 58.7
QL02p064885 Quercus lobata HOM05D005170 ORTHO05D006985 7.9e-26 120.9 120 57.5
Nn4g23569 Nelumbo nucifera HOM05D005170 ORTHO05D006985 5.1e-25 118.2 120 56.7
Potri.004G111500 Populus trichocarpa HOM05D005170 ORTHO05D006985 1.1e-24 117.1 121 56.2
CiPaw.03G081400 Carya illinoinensis HOM05D005170 ORTHO05D006985 4.4e-24 115.2 120 52.5
Lj4A126T71 Lonicera japonica HOM05D005170 ORTHO05D006985 4.4e-24 115.2 123 56.1
Sabra04G0072900 Salix brachista HOM05D005170 ORTHO05D006985 7.4e-24 114.4 121 55.4
COL.COLO4_00229 Corchorus olitorius HOM05D005170 ORTHO05D006985 1.3e-23 113.6 120 55.0
Cfa007711 Carpinus fangiana HOM05D005170 ORTHO05D006985 2.8e-23 112.5 120 52.5
CANSAT64G0674 Cannabis sativa HOM05D005170 ORTHO05D006985 3.7e-23 112.1 120 52.5
Thecc.04G110100 Theobroma cacao HOM05D005170 ORTHO05D006985 4.8e-23 111.7 119 52.1
Cpa.g.sc14.254 Carica papaya HOM05D005170 ORTHO05D006985 1.1e-22 110.5 121 52.9
Rhsim10G0060500 Rhododendron simsii HOM05D005170 ORTHO05D006985 1.1e-22 110.5 121 54.5
Hund16252 Selenicereus undatus HOM05D005170 ORTHO05D006985 3.1e-22 109.0 120 51.7
Sed0018763 Sechium edule HOM05D005170 ORTHO05D006985 4.1e-22 108.6 123 52.0
Solyc02g089360.4 Solanum lycopersicum HOM05D005170 ORTHO05D006985 4.1e-22 108.6 121 52.1
Nitab4.5_0002171g0080 Nicotiana tabacum HOM05D005170 ORTHO05D006985 1.2e-21 107.1 120 50.8
Manes.01G104800 Manihot esculenta HOM05D005170 ORTHO05D006985 1.5e-21 106.7 121 52.1
Dinv34895 Davidia involucrata HOM05D005170 ORTHO05D006985 4.5e-21 105.1 121 49.6
TWI34G1112 Tripterygium wilfordii HOM05D005170 ORTHO05D006985 4.5e-21 105.1 121 54.5
Hma1.2p1_2186F.1_g316400 Hydrangea macrophylla HOM05D005170 ORTHO05D006985 5.9e-21 104.8 121 52.1
Peaxi162Scf00020g02131 Petunia axillaris HOM05D005170 ORTHO05D006985 5.9e-21 104.8 120 52.5
PGSC0003DMG400001473 Solanum tuberosum HOM05D005170 ORTHO05D006985 7.7e-21 104.4 121 50.4
Gohir.D07G185600 Gossypium hirsutum HOM05D005170 ORTHO05D006985 1.0e-20 104.0 121 52.1
MELO3C018906.2 Cucumis melo HOM05D005170 ORTHO05D006985 1.7e-20 103.2 123 50.4
Nitab4.5_0002978g0100 Nicotiana tabacum HOM05D005170 ORTHO05D006985 2.2e-20 102.8 122 50.8
CsaV3_4G009930 Cucumis sativus L. HOM05D005170 ORTHO05D006985 2.9e-20 102.4 124 51.6
Gohir.A07G178500 Gossypium hirsutum HOM05D005170 ORTHO05D006985 5.0e-20 101.7 121 52.1
CAN.G497.45 Capsicum annuum HOM05D005170 ORTHO05D006985 6.5e-20 101.3 122 50.8
ClCG07G016130 Citrullus lanatus HOM05D005170 ORTHO05D006985 6.5e-20 101.3 123 49.6
Psat3g194480 Pisum sativum HOM05D005170 ORTHO05D006985 6.5e-20 101.3 121 51.2
Cc07_g04630 Coffea canephora HOM05D005170 ORTHO05D006985 8.5e-20 100.9 120 50.0
Lalb_Chr10g0092611 Lupinus albus HOM05D005170 ORTHO05D006985 1.1e-19 100.5 120 49.2
PGR004G2610 Punica granatum HOM05D005170 ORTHO05D006985 1.1e-19 100.5 117 49.6
Sopen02g034140 Solanum pennellii HOM05D005170 ORTHO05D006985 1.1e-19 100.5 121 50.4
MSTRG.2967 Avicennia marina HOM05D005170 ORTHO05D006985 1.9e-19 99.8 121 53.7
Ciclev10011153m.g Citrus clementina HOM05D005170 ORTHO05D006985 2.5e-19 99.4 119 49.6
Ah.16g100870 Amaranthus hybridus HOM05D005170 ORTHO05D006985 7.2e-19 97.8 130 49.2
TPR.G3272 Trifolium pratense HOM05D005170 ORTHO05D006985 9.4e-19 97.4 120 48.3
VMungo1383G1046 Vigna mungo HOM05D005170 ORTHO05D006985 9.4e-19 97.4 120 45.8
CSS0017694 Camellia sinensis var. sinensis HOM05D005170 ORTHO05D006985 1.6e-18 96.7 121 47.9
CSS0024263 Camellia sinensis var. sinensis HOM05D005170 ORTHO05D006985 1.6e-18 96.7 121 47.9
Glyma.18G276300 Glycine max HOM05D005170 ORTHO05D006985 1.6e-18 96.7 120 46.7
PSO782G1791 Papaver somniferum HOM05D005170 ORTHO05D006985 1.6e-18 96.7 125 49.6
arahy.Tifrunner.gnm1.ann1.3DLK77 Arachis hypogaea HOM05D005170 ORTHO05D006985 2.7e-18 95.9 121 50.4
arahy.Tifrunner.gnm1.ann1.66GFWV Arachis hypogaea HOM05D005170 ORTHO05D006985 2.7e-18 95.9 121 50.4
ECA246G1099 Erigeron canadensis HOM05D005170 ORTHO05D006985 3.6e-18 95.5 119 47.1
Migut.H00575 Erythranthe guttata HOM05D005170 ORTHO05D006985 3.6e-18 95.5 121 50.4
Phvul.008G024500 Phaseolus vulgaris HOM05D005170 ORTHO05D006985 3.6e-18 95.5 120 45.8
EL10Ac2g04408 Beta vulgaris HOM05D005170 ORTHO05D006985 4.7e-18 95.1 122 49.2
PSO063G4379 Papaver somniferum HOM05D005170 ORTHO05D006985 4.7e-18 95.1 125 48.8
Glyma.08G253900 Glycine max HOM05D005170 ORTHO05D006985 6.1e-18 94.7 120 46.7
Medtr7g017500 Medicago truncatula HOM05D005170 ORTHO05D006985 8.0e-18 94.4 121 50.4
Aqoxy3G03767 Aquilegia oxysepala HOM05D005170 ORTHO05D006985 1.8e-17 93.2 121 45.5
arahy.Tifrunner.gnm1.ann1.87D3N1 Arachis hypogaea HOM05D005170 ORTHO05D006985 1.8e-17 93.2 120 46.7
CDE02G1515 Ceratophyllum demersum HOM05D005170 ORTHO05D006985 1.8e-17 93.2 122 46.7
Lj1g0005667 Lotus japonicus HOM05D005170 ORTHO05D006985 2.3e-17 92.8 120 49.2
Eucgr.I02082 Eucalyptus grandis HOM05D005170 ORTHO05D006985 3.9e-17 92.0 120 48.3
Zm00001eb380550 Zea mays HOM05D005170 ORTHO05D006985 1.5e-16 90.1 121 47.9
Actinidia36275 Actinidia chinensis HOM05D005170 ORTHO05D006985 2.0e-16 89.7 107 50.5
HPP92_019180 Vanilla planifolia HOM05D005170 ORTHO05D006985 3.3e-16 89.0 121 46.3
HanXRQChr12g0380201 Helianthus annuus HOM05D005170 ORTHO05D006985 4.4e-16 88.6 120 50.0
Os06g0275900 Oryza sativa ssp. japonica HOM05D005170 ORTHO05D006985 1.3e-15 87.0 120 47.5
AUR62009453 Chenopodium quinoa HOM05D005170 ORTHO05D006985 8.2e-15 84.3 121 43.0
AUR62023134 Chenopodium quinoa HOM05D005170 ORTHO05D006985 1.1e-14 84.0 125 44.8
Lsat_1_v5_gn_3_95261 Lactuca sativa HOM05D005170 ORTHO05D006985 1.1e-14 84.0 121 47.1
SGA_v2.0_scaffold52G19060 Striga asiatica HOM05D005170 ORTHO05D006985 1.4e-14 83.6 105 48.6
Ca_06959_v3 Cicer arietinum L. HOM05D005170 ORTHO05D006985 4.1e-14 82.0 120 44.2
ATR0691G089 Amborella trichopoda HOM05D005170 ORTHO05D006985 7.0e-14 81.3 125 43.2
Oeu062190.2 Olea europaea HOM05D005170 ORTHO05D006985 9.1e-14 80.9 122 49.2
SEGI_17824 Sequoiadendron giganteum HOM05D000555 ORTHO05D000646 1.2e-13 80.5 132 39.4
Aa31LG9G16850 Aethionema arabicum HOM05D005170 ORTHO05D006985 3.5e-13 79.0 117 41.9
PSO339G2512 Papaver somniferum HOM05D005170 ORTHO05D006985 4.5e-13 78.6 124 42.7
BcaB06g27252 Brassica carinata HOM05D005170 ORTHO05D006985 7.7e-13 77.8 122 42.6
DCAR_007542 Daucus carota HOM05D005170 ORTHO05D006985 1.3e-12 77.0 110 42.7
Gorai.001G206200 Gossypium raimondii HOM05D005170 ORTHO05D006985 2.2e-12 76.3 105 47.6
arahy.Tifrunner.gnm1.ann1.NM7AU0 Arachis hypogaea HOM05D005170 ORTHO05D006985 8.5e-12 74.3 121 43.8
BcaC02g09673 Brassica carinata HOM05D005170 ORTHO05D006985 1.1e-11 73.9 122 42.6
C04p45420 Brassica napus HOM05D005170 ORTHO05D006985 1.1e-11 73.9 122 42.6
BolC4t26124H Brassica oleracea HOM05D005170 ORTHO05D006985 1.1e-11 73.9 122 42.6
arahy.Tifrunner.gnm1.ann1.5GV78D Arachis hypogaea HOM05D005170 ORTHO05D006985 9.4e-11 70.9 122 42.6
Sc11g0008940 Simmondsia chinensis HOM05D005170 ORTHO05D006985 2.7e-10 69.3 107 40.2
THA.LOC104805534 Tarenaya hassleriana HOM05D005170 ORTHO05D006985 4.7e-10 68.6 121 40.5
A04p11710 Brassica napus HOM05D005170 ORTHO05D006985 4.4e-08 62.0 122 37.7
BraA04t16838Z Brassica rapa HOM05D005170 ORTHO05D006985 4.4e-08 62.0 122 37.7
Mapoly0045s0050 Marchantia polymorpha HOM05D005170 ORTHO05D006985 6.3e-07 58.2 126 34.9
BcaC02g10619 Brassica carinata HOM05D028677 ORTHO05D027363 1.1e-06 57.4 85 40.0
Pp3c14_10960 Physcomitrium patens HOM05D005170 ORTHO05D006985 2.4e-06 56.2 116 32.8
CARHR263780 Cardamine hirsuta HOM05D005170 ORTHO05D006985 5.3e-06 55.1 123 37.4


User provided reference genes

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