Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0164041 Rosa chinensis HOM05D007488 ORTHO05D009461 5.4e-84 314.3 160 100.0
FvH4_6g45840 Fragaria vesca HOM05D007488 ORTHO05D009461 7.3e-41 171.0 189 51.9
FAN02G3897 Fragaria x ananassa HOM05D007488 ORTHO05D009461 1.6e-40 169.9 189 51.9
FAN05G4359 Fragaria x ananassa HOM05D007488 ORTHO05D009461 6.9e-39 164.5 189 50.8
MD14G1087900 Malus domestica HOM05D007488 ORTHO05D009461 7.3e-33 144.4 163 48.5
Hund19096 Selenicereus undatus HOM05D007488 ORTHO05D009461 1.3e-32 143.7 164 47.6
PGR142G4416 Punica granatum HOM05D007488 ORTHO05D009461 2.1e-32 142.9 159 48.4
TPR.G30624 Trifolium pratense HOM05D007488 ORTHO05D009461 4.8e-32 141.7 163 44.2
Ca_08393_v3 Cicer arietinum L. HOM05D007488 ORTHO05D009461 8.1e-32 141.0 163 44.8
Haze_15889 Corylus avellana HOM05D007488 ORTHO05D009461 8.1e-32 141.0 163 46.0
Ciclev10006109m.g Citrus clementina HOM05D007488 ORTHO05D009461 1.1e-31 140.6 157 44.6
Lj1g0022068 Lotus japonicus HOM05D007488 ORTHO05D009461 1.1e-31 140.6 165 44.2
Psat3g078680 Pisum sativum HOM05D007488 ORTHO05D009461 2.4e-31 139.4 163 43.6
Medtr7g089940 Medicago truncatula HOM05D007488 ORTHO05D009461 3.1e-31 139.0 163 43.6
Cfa003623 Carpinus fangiana HOM05D007488 ORTHO05D009461 4.0e-31 138.7 163 46.0
Nn4g25823 Nelumbo nucifera HOM05D007488 ORTHO05D009461 9.0e-31 137.5 151 48.3
Rhsim03G0039700 Rhododendron simsii HOM05D007488 ORTHO05D009461 1.2e-30 137.1 154 46.1
CiPaw.09G047600 Carya illinoinensis HOM05D007488 ORTHO05D009461 9.9e-30 134.0 153 47.1
Prupe.7G038600 Prunus persica HOM05D007488 ORTHO05D009461 9.9e-30 134.0 187 46.0
Eucgr.A02247 Eucalyptus grandis HOM05D007488 ORTHO05D009461 1.3e-29 133.7 168 45.8
Nitab4.5_0000812g0120 Nicotiana tabacum HOM05D007488 ORTHO05D009461 2.9e-29 132.5 154 44.8
DCAR_016880 Daucus carota HOM05D007488 ORTHO05D009461 6.4e-29 131.3 163 45.4
Lalb_Chr22g0357421 Lupinus albus HOM05D007488 ORTHO05D009461 8.4e-29 131.0 164 46.3
Nitab4.5_0006279g0050 Nicotiana tabacum HOM05D007488 ORTHO05D009461 8.4e-29 131.0 117 52.1
Phvul.001G123700 Phaseolus vulgaris HOM05D007488 ORTHO05D009461 1.1e-28 130.6 161 44.1
Cc06_g19180 Coffea canephora HOM05D007488 ORTHO05D009461 1.4e-28 130.2 162 45.1
MSTRG.19810 Avicennia marina HOM05D007488 ORTHO05D009461 1.9e-28 129.8 162 43.8
QL07p010346 Quercus lobata HOM05D007488 ORTHO05D009461 1.9e-28 129.8 162 44.4
Manes.09G005400 Manihot esculenta HOM05D007488 ORTHO05D009461 2.4e-28 129.4 163 40.5
Peaxi162Scf00076g00524 Petunia axillaris HOM05D007488 ORTHO05D009461 2.4e-28 129.4 150 42.0
VMungo1383G0792 Vigna mungo HOM05D007488 ORTHO05D009461 2.4e-28 129.4 159 42.8
AUR62018346 Chenopodium quinoa HOM05D007488 ORTHO05D009461 5.4e-28 128.3 154 44.8
TAR369G0408 Trochodendron aralioides HOM05D007488 ORTHO05D009461 7.1e-28 127.9 167 45.5
Atru.chr1.1442 Acer truncatum HOM05D007488 ORTHO05D009461 1.2e-27 127.1 164 44.5
Nitab4.5_0000424g0040 Nicotiana tabacum HOM05D007488 ORTHO05D009461 1.2e-27 127.1 161 42.2
FAN14G1565 Fragaria x ananassa HOM05D007488 ORTHO05D009461 1.6e-27 126.7 299 32.4
Actinidia01825 Actinidia chinensis HOM05D007488 ORTHO05D009461 2.1e-27 126.3 164 45.1
Sc18g0003830 Simmondsia chinensis HOM05D007488 ORTHO05D009461 2.7e-27 125.9 147 44.9
FAN09G2471 Fragaria x ananassa HOM05D007488 ORTHO05D009461 6.0e-27 124.8 157 47.1
Dinv09710 Davidia involucrata HOM05D007488 ORTHO05D009461 7.9e-27 124.4 163 43.6
Nitab4.5_0001937g0020 Nicotiana tabacum HOM05D007488 ORTHO05D009461 1.8e-26 123.2 161 39.8
arahy.Tifrunner.gnm1.ann1.Z4B7ZU Arachis hypogaea HOM05D007488 ORTHO05D009461 3.0e-26 122.5 162 42.6
Glyma.03G128000 Glycine max HOM05D007488 ORTHO05D009461 3.9e-26 122.1 159 43.4
Cpa.g.sc5.171 Carica papaya HOM05D007488 ORTHO05D009461 5.1e-26 121.7 166 41.6
AUR62030320 Chenopodium quinoa HOM05D007488 ORTHO05D009461 5.1e-26 121.7 155 45.2
CANSAT64G0776 Cannabis sativa HOM05D007488 ORTHO05D009461 1.5e-25 120.2 168 43.5
Aqoxy2G00394 Aquilegia oxysepala HOM05D007488 ORTHO05D009461 1.9e-25 119.8 185 39.5
EL10Ac3g07236 Beta vulgaris HOM05D007488 ORTHO05D009461 2.5e-25 119.4 156 45.5
Glyma.19G130600 Glycine max HOM05D007488 ORTHO05D009461 2.5e-25 119.4 159 40.9
PSO339G1058 Papaver somniferum HOM05D007488 ORTHO05D009461 5.6e-25 118.2 166 41.0
THA.LOC104803261 Tarenaya hassleriana HOM05D007488 ORTHO05D009461 9.6e-25 117.5 160 41.2
Lsat_1_v5_gn_5_157940 Lactuca sativa HOM05D007488 ORTHO05D009461 2.1e-24 116.3 117 46.2
TWI74G0203 Tripterygium wilfordii HOM05D007488 ORTHO05D009461 2.1e-24 116.3 118 51.7
Migut.K00133 Erythranthe guttata HOM05D007488 ORTHO05D009461 3.7e-24 115.5 162 42.6
HanXRQChr03g0061531 Helianthus annuus HOM05D007488 ORTHO05D009461 4.8e-24 115.2 160 40.0
BcaB01g03485 Brassica carinata HOM05D007488 ORTHO05D009461 8.1e-24 114.4 160 42.5
ECA248G2641 Erigeron canadensis HOM05D007488 ORTHO05D009461 8.1e-24 114.4 160 41.2
arahy.Tifrunner.gnm1.ann1.8RZU3Q Arachis hypogaea HOM05D007488 ORTHO05D009461 1.1e-23 114.0 163 41.1
Sp4g23500 Schrenkiella parvula HOM05D007488 ORTHO05D009461 1.1e-23 114.0 161 42.2
AT2G41200 Arabidopsis thaliana HOM05D007488 ORTHO05D009461 4.0e-23 112.1 160 40.0
Potri.006G038600 Populus trichocarpa HOM05D007488 ORTHO05D009461 1.2e-22 110.5 117 43.6
Carub.0004s2351 Capsella rubella HOM05D007488 ORTHO05D009461 1.5e-22 110.2 130 44.6
Oeu063781.2 Olea europaea HOM05D004518 ORTHO05D005434 1.5e-22 110.2 108 50.0
CAN.G317.6 Capsicum annuum HOM05D007488 ORTHO05D009461 2.0e-22 109.8 160 40.6
AL4G39170 Arabidopsis lyrata HOM05D007488 ORTHO05D009461 3.4e-22 109.0 160 38.8
BcaC01g05355 Brassica carinata HOM05D007488 ORTHO05D009461 3.4e-22 109.0 160 40.6
C03p27550 Brassica napus HOM05D007488 ORTHO05D009461 3.4e-22 109.0 160 40.6
BolC3t15128H Brassica oleracea HOM05D007488 ORTHO05D009461 3.4e-22 109.0 160 40.6
SalBow1G5076 Salvia bowleyana HOM05D007488 ORTHO05D009461 3.4e-22 109.0 162 38.9
SalBow1G6194 Salvia bowleyana HOM05D007488 ORTHO05D009461 3.4e-22 109.0 162 38.9
Sopen10g029120 Solanum pennellii HOM05D000484 ORTHO05D000346 3.4e-22 109.0 150 37.3
Sopen03g012080 Solanum pennellii HOM05D007488 ORTHO05D009461 5.8e-22 108.2 160 40.0
Thecc.05G135000 Theobroma cacao HOM05D007488 ORTHO05D009461 5.8e-22 108.2 160 38.1
A03p23120 Brassica napus HOM05D007488 ORTHO05D009461 1.3e-21 107.1 160 40.0
BraA03t11533Z Brassica rapa HOM05D007488 ORTHO05D009461 1.3e-21 107.1 160 40.0
Thhalv10017345m.g Eutrema salsugineum HOM05D007488 ORTHO05D009461 1.3e-21 107.1 161 40.4
CARHR136300 Cardamine hirsuta HOM05D007488 ORTHO05D009461 1.7e-21 106.7 161 39.8
Duzib106G1788 Durio zibethinus HOM05D007488 ORTHO05D009461 2.9e-21 105.9 160 37.5
GSVIVG01033626001 Vitis vinifera HOM05D007488 ORTHO05D009461 1.1e-20 104.0 160 38.1
Gohir.D11G322700 Gossypium hirsutum HOM05D007488 ORTHO05D009461 1.9e-20 103.2 161 38.5
Gorai.007G352800 Gossypium raimondii HOM05D007488 ORTHO05D009461 1.9e-20 103.2 161 38.5
Ah.04g150940 Amaranthus hybridus HOM05D007488 ORTHO05D009461 5.5e-20 101.7 107 52.3
Gohir.A11G307200 Gossypium hirsutum HOM05D007488 ORTHO05D009461 1.2e-19 100.5 161 37.9
PSO384G4473 Papaver somniferum HOM05D007488 ORTHO05D009461 1.2e-19 100.5 89 49.4
SGA_v2.0_scaffold94G28540 Striga asiatica HOM05D007488 ORTHO05D009461 1.3e-18 97.1 150 36.0
Peaxi162Scf00701g00057 Petunia axillaris HOM05D007488 ORTHO05D009461 1.9e-17 93.2 84 52.4
Lj1P1093T64 Lonicera japonica HOM05D007488 ORTHO05D009461 1.3e-16 90.5 82 53.7
MBI18_g37945_MAGBIO Magnolia biondii HOM05D007488 ORTHO05D009461 2.4e-15 86.3 131 41.2
Aa31LG3G800 Aethionema arabicum HOM05D007488 ORTHO05D009461 1.2e-14 84.0 86 50.0
BcaC02g12760 Brassica carinata HOM05D007488 ORTHO05D009461 3.8e-13 79.0 160 31.2
Solyc03g058440.1 Solanum lycopersicum HOM05D007488 ORTHO05D009461 8.4e-13 77.8 63 58.7
C04p02520 Brassica napus HOM05D007488 ORTHO05D009461 7.1e-12 74.7 97 43.3
Zm00001eb347080 Zea mays HOM05D007488 ORTHO05D009461 3.5e-11 72.4 143 33.6
BolC4t21895H Brassica oleracea HOM05D007488 ORTHO05D009461 7.9e-11 71.2 76 48.7
CDE09G0800 Ceratophyllum demersum HOM05D007488 ORTHO05D009461 5.1e-10 68.6 164 29.9
Os01g0955600 Oryza sativa ssp. japonica HOM05D007488 ORTHO05D009461 1.9e-09 66.6 114 35.1
A05p02110 Brassica napus HOM05D007488 ORTHO05D009461 4.3e-09 65.5 90 43.3
BraA05t19207Z Brassica rapa HOM05D007488 ORTHO05D009461 4.3e-09 65.5 90 43.3
MBI13_g11934_MAGBIO Magnolia biondii HOM05D007488 ORTHO05D009461 4.1e-07 58.9 65 49.2
ATR0057G037 Amborella trichopoda HOM05D007488 ORTHO05D009461 3.4e-06 55.8 122 33.6


User provided reference genes

Program Settings