Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0163991 Rosa chinensis HOM05D002873 ORTHO05D002978 2.1e-26 121.7 67 100.0
FAN02G0494 Fragaria x ananassa HOM05D002873 ORTHO05D002978 4.3e-19 97.4 66 81.8
Prupe.3G244200 Prunus persica HOM05D002873 ORTHO05D002978 1.3e-18 95.9 66 80.3
Prupe.3G244300 Prunus persica HOM05D002873 ORTHO05D002978 1.3e-18 95.9 66 80.3
Prupe.3G244100 Prunus persica HOM05D002873 ORTHO05D002978 2.1e-18 95.1 66 80.3
Prupe.3G244500 Prunus persica HOM05D002873 ORTHO05D002978 3.6e-18 94.4 66 78.8
Prupe.3G244600 Prunus persica HOM05D002873 ORTHO05D002978 4.8e-18 94.0 66 78.8
TWI34G1371 Tripterygium wilfordii HOM05D002873 ORTHO05D002978 8.1e-18 93.2 66 75.8
Prupe.3G244400 Prunus persica HOM05D002873 ORTHO05D002978 1.1e-17 92.8 66 77.3
Prupe.3G244700 Prunus persica HOM05D002873 ORTHO05D002978 4.0e-17 90.9 64 78.1
MD09G1079600 Malus domestica HOM05D002873 ORTHO05D002978 1.2e-16 89.4 66 75.8
FAN05G4367 Fragaria x ananassa HOM05D002873 ORTHO05D002978 5.8e-16 87.0 67 74.6
THA.LOC109117084 Tarenaya hassleriana HOM05D002873 ORTHO05D002978 9.9e-16 86.3 66 72.7
Ca_06717_v3 Cicer arietinum L. HOM05D002873 ORTHO05D002978 1.3e-15 85.9 62 75.8
Lalb_Chr04g0258251 Lupinus albus HOM05D002873 ORTHO05D002978 2.2e-15 85.1 64 71.9
Haze_14075 Corylus avellana HOM05D002873 ORTHO05D002978 2.9e-15 84.7 66 71.2
Sopen02g034300 Solanum pennellii HOM05D002873 ORTHO05D002978 2.9e-15 84.7 67 70.1
Peaxi162Scf00479g00055 Petunia axillaris HOM05D002873 ORTHO05D002978 6.4e-15 83.6 67 68.7
Sed0008680 Sechium edule HOM05D002873 ORTHO05D002978 4.2e-14 80.9 66 71.2
arahy.Tifrunner.gnm1.ann1.4T36CH Arachis hypogaea HOM05D002873 ORTHO05D002978 7.1e-14 80.1 65 67.7
arahy.Tifrunner.gnm1.ann1.JTM1YJ Arachis hypogaea HOM05D002873 ORTHO05D002978 7.1e-14 80.1 65 67.7
FAN09G3043 Fragaria x ananassa HOM05D002873 ORTHO05D002978 1.2e-13 79.3 67 71.6
Nitab4.5_0006224g0060 Nicotiana tabacum HOM05D002873 ORTHO05D002978 1.2e-13 79.3 64 73.4
RcHm_v2.0_Chr2g0163981 Rosa chinensis HOM05D002873 ORTHO05D002978 1.2e-13 79.3 105 53.3
Peaxi162Scf00479g00065 Petunia axillaris HOM05D002873 ORTHO05D002978 3.5e-13 77.8 67 65.7
RcHm_v2.0_Chr2g0164011 Rosa chinensis HOM05D002873 ORTHO05D002978 4.6e-13 77.4 66 68.2
Dinv33894 Davidia involucrata HOM05D002873 ORTHO05D002978 2.3e-12 75.1 67 62.7
GSVIVG01036492001 Vitis vinifera HOM05D002873 ORTHO05D002978 2.3e-12 75.1 67 64.2
A02p10830 Brassica napus HOM05D002873 ORTHO05D002978 3.0e-12 74.7 66 59.1
BraA02t06145Z Brassica rapa HOM05D002873 ORTHO05D002978 3.0e-12 74.7 66 59.1
Glyma.08G255700 Glycine max HOM05D002873 ORTHO05D002978 3.0e-12 74.7 62 62.9
Peaxi162Scf00479g00423 Petunia axillaris HOM05D002873 ORTHO05D002978 5.1e-12 73.9 67 64.2
Potri.017G108400 Populus trichocarpa HOM05D002873 ORTHO05D002978 5.1e-12 73.9 66 63.6
Haze_17643 Corylus avellana HOM05D002873 ORTHO05D002978 6.7e-12 73.6 67 61.2
Actinidia18105 Actinidia chinensis HOM05D002873 ORTHO05D002978 8.7e-12 73.2 67 62.7
Aqoxy6G02621 Aquilegia oxysepala HOM05D002873 ORTHO05D002978 8.7e-12 73.2 67 61.2
BcaC03g14385 Brassica carinata HOM05D002873 ORTHO05D002978 8.7e-12 73.2 66 57.6
C02p17950 Brassica napus HOM05D002873 ORTHO05D002978 8.7e-12 73.2 66 57.6
BolC2t07926H Brassica oleracea HOM05D002873 ORTHO05D002978 8.7e-12 73.2 66 57.6
FvH4_6g45800 Fragaria vesca HOM05D002873 ORTHO05D002978 8.7e-12 73.2 111 47.7
CsaV3_5G004620 Cucumis sativus L. HOM05D002873 ORTHO05D002978 3.3e-11 71.2 66 63.6
FAN09G4276 Fragaria x ananassa HOM05D002873 ORTHO05D002978 3.3e-11 71.2 111 46.8
Actinidia26314 Actinidia chinensis HOM05D002873 ORTHO05D002978 4.3e-11 70.9 67 62.7
Dinv33895 Davidia involucrata HOM05D002873 ORTHO05D002978 4.3e-11 70.9 67 61.2
FAN14G0065 Fragaria x ananassa HOM05D003981 ORTHO05D003666 4.3e-11 70.9 110 46.4
Potri.017G108300 Populus trichocarpa HOM05D002873 ORTHO05D002978 4.3e-11 70.9 66 60.6
Potri.017G108350 Populus trichocarpa HOM05D002873 ORTHO05D002978 4.3e-11 70.9 66 60.6
Aqoxy6G00630 Aquilegia oxysepala HOM05D002873 ORTHO05D002978 5.6e-11 70.5 67 59.7
CARHR288730 Cardamine hirsuta HOM05D002873 ORTHO05D002978 5.6e-11 70.5 61 63.9
CsaV3_5G004610 Cucumis sativus L. HOM05D002873 ORTHO05D002978 5.6e-11 70.5 66 62.1
Carub.0003s0158 Capsella rubella HOM05D002873 ORTHO05D002978 7.4e-11 70.1 66 57.6
Cfa020560 Carpinus fangiana HOM05D002873 ORTHO05D002978 7.4e-11 70.1 67 58.2
Dinv38615 Davidia involucrata HOM05D002873 ORTHO05D002978 7.4e-11 70.1 66 62.1
Sc11g0008050 Simmondsia chinensis HOM05D002873 ORTHO05D002978 7.4e-11 70.1 67 59.7
Cpa.g.sc188.26 Carica papaya HOM05D002873 ORTHO05D002978 9.6e-11 69.7 64 60.9
Hund13793 Selenicereus undatus HOM05D002873 ORTHO05D002978 9.6e-11 69.7 68 63.2
Sopen02g027770 Solanum pennellii HOM05D002873 ORTHO05D002978 9.6e-11 69.7 67 59.7
AL3G11800 Arabidopsis lyrata HOM05D002873 ORTHO05D002978 1.3e-10 69.3 66 57.6
Eucgr.I02095 Eucalyptus grandis HOM05D002873 ORTHO05D002978 1.3e-10 69.3 66 60.6
Sed0011149 Sechium edule HOM05D002873 ORTHO05D002978 1.3e-10 69.3 73 58.9
PGSC0003DMG400001534 Solanum tuberosum HOM05D002873 ORTHO05D002978 1.3e-10 69.3 67 59.7
Nitab4.5_0006524g0010 Nicotiana tabacum HOM05D002873 ORTHO05D002978 1.6e-10 68.9 70 60.0
Migut.H00555 Erythranthe guttata HOM05D002873 ORTHO05D002978 2.1e-10 68.6 62 58.1
BcaC09g47705 Brassica carinata HOM05D002873 ORTHO05D002978 2.8e-10 68.2 66 56.1
BNapus_Darmor_BZH_scaffold_208p00010 Brassica napus HOM05D002873 ORTHO05D002978 2.8e-10 68.2 66 56.1
BolC1t05901H Brassica oleracea HOM05D002873 ORTHO05D002978 2.8e-10 68.2 66 56.1
BraSC141t45633Z Brassica rapa HOM05D002873 ORTHO05D002978 2.8e-10 68.2 66 56.1
Dinv36852 Davidia involucrata HOM05D002873 ORTHO05D002978 2.8e-10 68.2 65 60.0
BcaC01g04444 Brassica carinata HOM05D002873 ORTHO05D002978 3.7e-10 67.8 65 60.0
C03p40070 Brassica napus HOM05D002873 ORTHO05D002978 3.7e-10 67.8 65 60.0
BolC3t16273H Brassica oleracea HOM05D002873 ORTHO05D002978 3.7e-10 67.8 65 60.0
Glyma.18G278600 Glycine max HOM05D002873 ORTHO05D002978 3.7e-10 67.8 62 61.3
Lj1g0022638 Lotus japonicus HOM05D002873 ORTHO05D002978 3.7e-10 67.8 63 61.9
Sabra04G0074600 Salix brachista HOM05D002873 ORTHO05D002978 3.7e-10 67.8 66 60.6
Potri.017G108500 Populus trichocarpa HOM05D002873 ORTHO05D002978 4.8e-10 67.4 90 46.7
A03p32950 Brassica napus HOM05D002873 ORTHO05D002978 6.2e-10 67.0 65 60.0
BraA03t12463Z Brassica rapa HOM05D002873 ORTHO05D002978 6.2e-10 67.0 65 60.0
CsaV3_5G038880 Cucumis sativus L. HOM05D002873 ORTHO05D002978 6.2e-10 67.0 66 57.6
Sed0018699 Sechium edule HOM05D002873 ORTHO05D002978 6.2e-10 67.0 66 62.1
BNapus_Darmor_BZH_scaffold_122p00010 Brassica napus HOM05D002873 ORTHO05D002978 8.2e-10 66.6 66 54.5
BNapus_Darmor_BZH_scaffold_99p00020 Brassica napus HOM05D002873 ORTHO05D002978 8.2e-10 66.6 66 54.5
BolC1t05900H Brassica oleracea HOM05D002873 ORTHO05D002978 8.2e-10 66.6 66 54.5
Solyc02g082990.4 Solanum lycopersicum HOM05D002873 ORTHO05D002978 8.2e-10 66.6 67 58.2
MD17G1070100 Malus domestica HOM05D002873 ORTHO05D002978 1.1e-09 66.2 66 63.6
Nitab4.5_0015566g0010 Nicotiana tabacum HOM05D002873 ORTHO05D002978 1.1e-09 66.2 67 61.2
AT3G02480 Arabidopsis thaliana HOM05D002873 ORTHO05D002978 1.4e-09 65.9 66 56.1
Phvul.004G047300 Phaseolus vulgaris HOM05D002873 ORTHO05D002978 1.8e-09 65.5 63 55.6
Solyc02g089570.3 Solanum lycopersicum HOM05D002873 ORTHO05D002978 2.4e-09 65.1 67 58.2
Migut.H00561 Erythranthe guttata HOM05D002873 ORTHO05D002978 3.1e-09 64.7 67 58.2
MELO3C005500.2 Cucumis melo HOM05D002873 ORTHO05D002978 4.0e-09 64.3 66 59.1
MELO3C022078.2 Cucumis melo HOM05D002873 ORTHO05D002978 4.0e-09 64.3 66 57.6
THA.LOC109116088 Tarenaya hassleriana HOM05D002873 ORTHO05D002978 5.3e-09 63.9 66 56.1
Solyc02g065640.3 Solanum lycopersicum HOM05D002873 ORTHO05D002978 6.9e-09 63.5 67 58.2
CSS0045706 Camellia sinensis var. sinensis HOM05D002873 ORTHO05D002978 9.0e-09 63.2 67 58.2
CSS0047860 Camellia sinensis var. sinensis HOM05D002873 ORTHO05D002978 9.0e-09 63.2 67 58.2
Cfa007996 Carpinus fangiana HOM05D002873 ORTHO05D002978 9.0e-09 63.2 66 60.6
PSO478G1110 Papaver somniferum HOM05D002873 ORTHO05D002978 9.0e-09 63.2 66 59.1
Dinv34873 Davidia involucrata HOM05D002873 ORTHO05D002978 1.5e-08 62.4 69 58.0
Nitab4.5_0012845g0030 Nicotiana tabacum HOM05D002873 ORTHO05D002978 1.5e-08 62.4 67 56.7
Peaxi162Scf01056g00020 Petunia axillaris HOM05D002873 ORTHO05D002978 1.5e-08 62.4 67 58.2
Sc11g0008060 Simmondsia chinensis HOM05D002873 ORTHO05D002978 1.5e-08 62.4 66 56.1
Sed0026183 Sechium edule HOM05D002873 ORTHO05D002978 2.0e-08 62.0 66 54.5
Sed0018450 Sechium edule HOM05D002873 ORTHO05D002978 4.5e-08 60.8 66 56.1
Cc00_g21590 Coffea canephora HOM05D002873 ORTHO05D002978 7.6e-08 60.1 67 56.7
MELO3C005501.2 Cucumis melo HOM05D002873 ORTHO05D002978 7.6e-08 60.1 66 57.6
Sabra04G0074500 Salix brachista HOM05D002873 ORTHO05D002978 7.6e-08 60.1 66 54.5
Sed0007664 Sechium edule HOM05D002873 ORTHO05D002978 7.6e-08 60.1 66 60.6
Sopen02g015850 Solanum pennellii HOM05D002873 ORTHO05D002978 7.6e-08 60.1 67 55.2
EL10Ac2g04705 Beta vulgaris HOM05D002873 ORTHO05D002978 1.0e-07 59.7 67 53.7
Oeu032858.1 Olea europaea HOM05D002873 ORTHO05D002978 1.0e-07 59.7 67 55.2
Thhalv10028020m.g Eutrema salsugineum HOM05D002873 ORTHO05D002978 1.3e-07 59.3 65 55.4
Glyma.19G040000 Glycine max HOM05D002873 ORTHO05D002978 1.3e-07 59.3 61 59.0
Actinidia36291 Actinidia chinensis HOM05D002873 ORTHO05D002978 1.7e-07 58.9 67 53.7
Aa31LG5G10000 Aethionema arabicum HOM05D002873 ORTHO05D002978 1.7e-07 58.9 71 49.3
Migut.N00988 Erythranthe guttata HOM05D002873 ORTHO05D002978 1.7e-07 58.9 67 55.2
PSO017G1587 Papaver somniferum HOM05D002873 ORTHO05D002978 1.7e-07 58.9 66 56.1
PSO017G6817 Papaver somniferum HOM05D002873 ORTHO05D002978 1.7e-07 58.9 66 56.1
MELO3C022079.2 Cucumis melo HOM05D002873 ORTHO05D002978 2.2e-07 58.5 35 85.7
C09p61100 Brassica napus HOM05D010783 ORTHO05D013000 2.9e-07 58.2 62 53.2
BolC9t58953H Brassica oleracea HOM05D010783 ORTHO05D013000 2.9e-07 58.2 62 53.2
Migut.N00991 Erythranthe guttata HOM05D002873 ORTHO05D002978 2.9e-07 58.2 67 55.2
Phvul.008G022400 Phaseolus vulgaris HOM05D002873 ORTHO05D002978 2.9e-07 58.2 71 52.1
Thecc.04G146000 Theobroma cacao HOM05D002873 ORTHO05D002978 2.9e-07 58.2 66 56.1
Carub.0008s1411 Capsella rubella HOM05D002873 ORTHO05D002978 3.8e-07 57.8 65 50.8
Ca_20748_v3 Cicer arietinum L. HOM05D002873 ORTHO05D002978 3.8e-07 57.8 65 55.4
Thhalv10015216m.g Eutrema salsugineum HOM05D002873 ORTHO05D002978 3.8e-07 57.8 65 52.3
Atru.chr10.1869 Acer truncatum HOM05D002873 ORTHO05D002978 6.5e-07 57.0 66 56.1
CARHR076460 Cardamine hirsuta HOM05D002873 ORTHO05D002978 6.5e-07 57.0 65 50.8
Medtr7g018280 Medicago truncatula HOM05D002873 ORTHO05D002978 6.5e-07 57.0 98 40.8
THA.LOC109116670 Tarenaya hassleriana HOM05D002873 ORTHO05D002978 6.5e-07 57.0 44 68.2
THA.LOC109116986 Tarenaya hassleriana HOM05D002873 ORTHO05D002978 6.5e-07 57.0 65 50.8
A10p23100 Brassica napus HOM05D010783 ORTHO05D013000 8.4e-07 56.6 62 51.6
CiPaw.03G007000 Carya illinoinensis HOM05D002873 ORTHO05D002978 8.4e-07 56.6 67 52.2
PGR042G3018 Punica granatum HOM05D002873 ORTHO05D002978 8.4e-07 56.6 66 51.5
Sed0012567 Sechium edule HOM05D002873 ORTHO05D002978 8.4e-07 56.6 66 59.1
FvH4_6g45802 Fragaria vesca HOM05D002873 ORTHO05D002978 1.1e-06 56.2 66 54.5
FAN05G0873 Fragaria x ananassa HOM05D002873 ORTHO05D002978 1.1e-06 56.2 66 54.5
Oeu049338.1 Olea europaea HOM05D002873 ORTHO05D002978 1.1e-06 56.2 67 53.7
Sed0026500 Sechium edule HOM05D002873 ORTHO05D002978 1.1e-06 56.2 66 54.5
vmacro18088 Vaccinium macrocarpon HOM05D002873 ORTHO05D002978 1.1e-06 56.2 67 53.7
Eucgr.J01446 Eucalyptus grandis HOM05D002873 ORTHO05D002978 1.4e-06 55.8 121 38.0
Peaxi162Scf00019g00065 Petunia axillaris HOM05D002873 ORTHO05D002978 1.4e-06 55.8 41 70.7
Rhsim10G0062500 Rhododendron simsii HOM05D007347 ORTHO05D009296 1.9e-06 55.5 41 70.7
BraA10t44378Z Brassica rapa HOM05D010783 ORTHO05D013000 2.5e-06 55.1 62 50.0
Migut.K00873 Erythranthe guttata HOM05D002873 ORTHO05D002978 2.5e-06 55.1 67 55.2
Psat3g191840 Pisum sativum HOM05D002873 ORTHO05D002978 2.5e-06 55.1 60 53.3
Rhsim08G0081300 Rhododendron simsii HOM05D002873 ORTHO05D002978 2.5e-06 55.1 41 70.7
GSVIVG01036482001 Vitis vinifera HOM05D002873 ORTHO05D002978 2.5e-06 55.1 65 50.8
Potri.004G107500 Populus trichocarpa HOM05D002873 ORTHO05D002978 3.2e-06 54.7 66 51.5
Sp6g28150 Schrenkiella parvula HOM05D010783 ORTHO05D013000 3.2e-06 54.7 62 50.0
BcaB08g35740 Brassica carinata HOM05D002873 ORTHO05D002978 4.2e-06 54.3 66 48.5
BcaB08g36874 Brassica carinata HOM05D010783 ORTHO05D013000 4.2e-06 54.3 62 50.0
C09p43800 Brassica napus HOM05D002873 ORTHO05D002978 4.2e-06 54.3 66 48.5
BolC9t57265H Brassica oleracea HOM05D002873 ORTHO05D002978 4.2e-06 54.3 66 48.5
FAN09G4825 Fragaria x ananassa HOM05D002873 ORTHO05D002978 4.2e-06 54.3 66 53.0
Hma1.2p1_0588F.1_g184450 Hydrangea macrophylla HOM05D002873 ORTHO05D002978 4.2e-06 54.3 64 53.1
Medtr7g020780 Medicago truncatula HOM05D002873 ORTHO05D002978 4.2e-06 54.3 67 50.7
Nitab4.5_0001324g0010 Nicotiana tabacum HOM05D002873 ORTHO05D002978 4.2e-06 54.3 67 52.2
Sc10g0001460 Simmondsia chinensis HOM05D002873 ORTHO05D002978 4.2e-06 54.3 56 55.4
Aqoxy3G00629 Aquilegia oxysepala HOM05D002873 ORTHO05D002978 5.5e-06 53.9 67 49.3
BraA10t43210Z Brassica rapa HOM05D002873 ORTHO05D002978 5.5e-06 53.9 66 47.0
AUR62008938 Chenopodium quinoa HOM05D002873 ORTHO05D002978 5.5e-06 53.9 88 42.0
Sabra17G0091100 Salix brachista HOM05D002873 ORTHO05D002978 5.5e-06 53.9 38 73.7
CAN.G497.26 Capsicum annuum HOM05D002873 ORTHO05D002978 7.1e-06 53.5 67 52.2
CAN.G497.27 Capsicum annuum HOM05D002873 ORTHO05D002978 7.1e-06 53.5 67 52.2
Duzib268G0192 Durio zibethinus HOM05D002873 ORTHO05D002978 7.1e-06 53.5 66 53.0
Nitab4.5_0003384g0010 Nicotiana tabacum HOM05D002873 ORTHO05D002978 7.1e-06 53.5 58 51.7
Solyc02g089580.3 Solanum lycopersicum HOM05D002873 ORTHO05D002978 7.1e-06 53.5 67 50.7
AT5G53820 Arabidopsis thaliana HOM05D002873 ORTHO05D002978 9.3e-06 53.1 66 47.0
A02p03320 Brassica napus HOM05D010783 ORTHO05D013000 9.3e-06 53.1 62 50.0
A10p11190 Brassica napus HOM05D002873 ORTHO05D002978 9.3e-06 53.1 66 47.0
BraA02t05303Z Brassica rapa HOM05D010783 ORTHO05D013000 9.3e-06 53.1 62 50.0
Cpa.g.sc188.25 Carica papaya HOM05D002873 ORTHO05D002978 9.3e-06 53.1 64 48.4
Cfa007988 Carpinus fangiana HOM05D002873 ORTHO05D002978 9.3e-06 53.1 90 41.1
Hma1.2p1_0588F.1_g184500 Hydrangea macrophylla HOM05D002873 ORTHO05D002978 9.3e-06 53.1 67 52.2


User provided reference genes

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