Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0163971 Rosa chinensis HOM05D005159 ORTHO05D006237 2.5e-158 562.4 356 100.0
FvH4_6g45790 Fragaria vesca HOM05D005159 ORTHO05D006237 5.3e-132 474.9 359 80.5
FAN09G0042 Fragaria x ananassa HOM05D005159 ORTHO05D006237 1.5e-131 473.4 359 80.2
FAN05G5180 Fragaria x ananassa HOM05D005159 ORTHO05D006237 2.3e-127 459.5 376 80.6
FAN02G2008 Fragaria x ananassa HOM05D005159 ORTHO05D006237 2.9e-106 389.4 303 86.5
FAN14G1445 Fragaria x ananassa HOM05D005159 ORTHO05D006237 1.1e-102 377.5 574 54.7
Prupe.3G244000 Prunus persica HOM05D005159 ORTHO05D006237 2.8e-72 276.6 363 60.1
MD09G1079700 Malus domestica HOM05D005159 ORTHO05D006237 6.8e-71 271.9 364 60.4
MD17G1070200 Malus domestica HOM05D005159 ORTHO05D006237 5.7e-70 268.9 365 61.4
Ciclev10012260m.g Citrus clementina HOM05D005159 ORTHO05D006237 9.2e-52 208.4 229 55.5
CANSAT21G0179 Cannabis sativa HOM05D005159 ORTHO05D006237 3.0e-50 203.4 367 44.7
CAN.G497.25 Capsicum annuum HOM05D005159 ORTHO05D006237 2.1e-48 197.2 136 72.8
Manes.01G106500 Manihot esculenta HOM05D005159 ORTHO05D006237 2.1e-48 197.2 264 48.9
Migut.K00872 Erythranthe guttata HOM05D005159 ORTHO05D006237 4.7e-48 196.1 136 73.5
ClCG11G001130 Citrullus lanatus HOM05D005159 ORTHO05D006237 6.2e-48 195.7 136 73.5
Glyma.13G171200 Glycine max HOM05D005159 ORTHO05D006237 6.2e-48 195.7 134 75.4
Sed0024356 Sechium edule HOM05D005159 ORTHO05D006237 8.1e-48 195.3 136 72.1
MSTRG.15424 Avicennia marina HOM05D005159 ORTHO05D006237 1.1e-47 194.9 136 74.3
Cc08_g12050 Coffea canephora HOM05D005159 ORTHO05D006237 1.4e-47 194.5 136 71.3
Eucgr.I02096 Eucalyptus grandis HOM05D005159 ORTHO05D006237 1.8e-47 194.1 136 72.8
SGA_v2.0_scaffold10G05141 Striga asiatica HOM05D005159 ORTHO05D006237 1.8e-47 194.1 299 45.5
Thecc.04G145900 Theobroma cacao HOM05D005159 ORTHO05D006237 1.8e-47 194.1 136 75.0
Cpa.g.sc70.15 Carica papaya HOM05D005159 ORTHO05D006237 2.3e-47 193.7 342 44.4
CsaV3_5G013180 Cucumis sativus L. HOM05D005159 ORTHO05D006237 4.0e-47 193.0 138 71.7
QL02p054338 Quercus lobata HOM05D005159 ORTHO05D006237 4.0e-47 193.0 359 49.9
arahy.Tifrunner.gnm1.ann1.MEN3PN Arachis hypogaea HOM05D005159 ORTHO05D006237 5.2e-47 192.6 136 73.5
Dinv33896 Davidia involucrata HOM05D005159 ORTHO05D006237 5.2e-47 192.6 219 54.3
Sed0002827 Sechium edule HOM05D005159 ORTHO05D006237 5.2e-47 192.6 136 72.8
Sabra04G0075100 Salix brachista HOM05D005159 ORTHO05D006237 8.9e-47 191.8 361 41.8
Atru.chr11.1725 Acer truncatum HOM05D005159 ORTHO05D006237 1.2e-46 191.4 307 57.7
Medtr4g051625 Medicago truncatula HOM05D005159 ORTHO05D006237 1.2e-46 191.4 135 71.1
Medtr8g085800 Medicago truncatula HOM05D005159 ORTHO05D006237 1.2e-46 191.4 135 72.6
Oeu062202.1 Olea europaea HOM05D005159 ORTHO05D006237 1.2e-46 191.4 138 73.2
MELO3C020033.2 Cucumis melo HOM05D005159 ORTHO05D006237 1.5e-46 191.0 138 71.0
Duzib211G0079 Durio zibethinus HOM05D005159 ORTHO05D006237 1.5e-46 191.0 136 73.5
PGR004G1892 Punica granatum HOM05D005159 ORTHO05D006237 2.6e-46 190.3 365 41.6
Gohir.A13G118100 Gossypium hirsutum HOM05D005159 ORTHO05D006237 3.4e-46 189.9 136 73.5
Sc10g0001500 Simmondsia chinensis HOM05D005159 ORTHO05D006237 4.4e-46 189.5 136 73.5
Nitab4.5_0001982g0030 Nicotiana tabacum HOM05D005159 ORTHO05D006237 5.8e-46 189.1 136 70.6
CiPaw.03G007500 Carya illinoinensis HOM05D005159 ORTHO05D006237 9.9e-46 188.3 307 49.8
Nitab4.5_0006224g0050 Nicotiana tabacum HOM05D005159 ORTHO05D006237 1.7e-45 187.6 136 70.6
unitig_61.g26382 Utricularia gibba HOM05D005159 ORTHO05D006237 1.7e-45 187.6 138 70.3
Actinidia36292 Actinidia chinensis HOM05D005159 ORTHO05D006237 2.2e-45 187.2 132 73.5
GSVIVG01036491001 Vitis vinifera HOM05D005159 ORTHO05D006237 2.2e-45 187.2 366 41.0
THA.LOC104805544 Tarenaya hassleriana HOM05D005159 ORTHO05D006237 2.9e-45 186.8 137 73.0
CDE01G0131 Ceratophyllum demersum HOM05D005159 ORTHO05D006237 3.7e-45 186.4 136 70.6
Gorai.013G136600 Gossypium raimondii HOM05D005159 ORTHO05D006237 3.7e-45 186.4 136 72.1
Ca_13657_v3 Cicer arietinum L. HOM05D005159 ORTHO05D006237 4.9e-45 186.0 135 70.4
Hund27686 Selenicereus undatus HOM05D005159 ORTHO05D006237 6.4e-45 185.7 136 71.3
Hund27687 Selenicereus undatus HOM05D005159 ORTHO05D006237 6.4e-45 185.7 136 71.3
Gohir.D13G121900 Gossypium hirsutum HOM05D005159 ORTHO05D006237 8.4e-45 185.3 136 71.3
Potri.017G108700 Populus trichocarpa HOM05D005159 ORTHO05D006237 1.1e-44 184.9 338 42.6
TWI32G0838 Tripterygium wilfordii HOM05D005159 ORTHO05D006237 5.4e-44 182.6 372 40.1
Potri.004G106900 Populus trichocarpa HOM05D005159 ORTHO05D006237 9.2e-44 181.8 361 40.4
Psat6g166480 Pisum sativum HOM05D005159 ORTHO05D006237 2.7e-43 180.3 138 68.8
CDE02G0002 Ceratophyllum demersum HOM05D005159 ORTHO05D006237 3.5e-43 179.9 134 68.7
arahy.Tifrunner.gnm1.ann1.VE7QKQ Arachis hypogaea HOM05D005159 ORTHO05D006237 4.6e-43 179.5 136 69.1
AUR62016605 Chenopodium quinoa HOM05D005159 ORTHO05D006237 6.0e-43 179.1 136 69.9
Ah.15g094970 Amaranthus hybridus HOM05D005159 ORTHO05D006237 7.8e-43 178.7 136 69.1
Phvul.008G006700 Phaseolus vulgaris HOM05D005159 ORTHO05D006237 1.0e-42 178.3 345 40.9
Glyma.07G204700 Glycine max HOM05D005159 ORTHO05D006237 1.3e-42 177.9 353 40.5
BcaC02g09665 Brassica carinata HOM05D005159 ORTHO05D006237 1.7e-42 177.6 137 67.9
C04p45340 Brassica napus HOM05D005159 ORTHO05D006237 1.7e-42 177.6 137 67.9
BolC4t26116H Brassica oleracea HOM05D005159 ORTHO05D006237 1.7e-42 177.6 137 67.9
BraA04t16828Z Brassica rapa HOM05D005159 ORTHO05D006237 1.7e-42 177.6 137 67.9
Ca_26327_v3 Cicer arietinum L. HOM05D005159 ORTHO05D006237 1.7e-42 177.6 135 65.2
Nn1g09575 Nelumbo nucifera HOM05D005159 ORTHO05D006237 3.0e-42 176.8 350 39.7
Solyc03g046350.3 Solanum lycopersicum HOM05D005159 ORTHO05D006237 3.0e-42 176.8 331 40.5
Peaxi162Scf00479g00439 Petunia axillaris HOM05D005159 ORTHO05D006237 3.9e-42 176.4 338 39.9
A04p11610 Brassica napus HOM05D005159 ORTHO05D006237 6.6e-42 175.6 137 67.2
PGSC0003DMG400010100 Solanum tuberosum HOM05D005159 ORTHO05D006237 6.6e-42 175.6 380 39.5
DCAR_026285 Daucus carota HOM05D005159 ORTHO05D006237 8.6e-42 175.3 327 45.3
Actinidia18107 Actinidia chinensis HOM05D005159 ORTHO05D006237 1.5e-41 174.5 381 41.7
PSO017G6426 Papaver somniferum HOM05D005159 ORTHO05D006237 1.5e-41 174.5 136 64.0
Sopen03g009860 Solanum pennellii HOM05D005159 ORTHO05D006237 1.5e-41 174.5 337 40.9
Solyc02g089600.3 Solanum lycopersicum HOM05D005159 ORTHO05D006237 1.9e-41 174.1 367 40.9
EL10Ac7g16490 Beta vulgaris HOM05D005159 ORTHO05D006237 2.5e-41 173.7 136 65.4
Lju237A1T66 Lonicera japonica HOM05D005159 ORTHO05D006237 9.6e-41 171.8 390 37.9
Medtr1g090650 Medicago truncatula HOM05D005159 ORTHO05D006237 9.6e-41 171.8 135 65.9
Aa31LG9G16930 Aethionema arabicum HOM05D005159 ORTHO05D006237 2.1e-40 170.6 360 41.1
Ah.08g217340 Amaranthus hybridus HOM05D005159 ORTHO05D006237 6.2e-40 169.1 136 64.0
PGSC0003DMG400018775 Solanum tuberosum HOM05D005159 ORTHO05D006237 8.1e-40 168.7 362 37.6
MBI15_g18197_MAGBIO Magnolia biondii HOM05D005159 ORTHO05D006237 1.4e-39 167.9 348 39.9
Peaxi162Scf01056g00019 Petunia axillaris HOM05D005159 ORTHO05D006237 3.1e-39 166.8 377 38.7
SalBow1G7987 Salvia bowleyana HOM05D005159 ORTHO05D006237 3.1e-39 166.8 357 40.3
TPR.G37714 Trifolium pratense HOM05D005159 ORTHO05D006237 3.1e-39 166.8 328 40.5
PSO478G0642 Papaver somniferum HOM05D005159 ORTHO05D006237 8.9e-39 165.2 136 61.0
HanXRQChr03g0078031 Helianthus annuus HOM05D005159 ORTHO05D006237 1.2e-38 164.9 135 64.4
Lsat_1_v5_gn_8_24161 Lactuca sativa HOM05D005159 ORTHO05D006237 1.2e-38 164.9 139 66.9
AT5G38720 Arabidopsis thaliana HOM05D005159 ORTHO05D006237 2.0e-38 164.1 137 61.3
Psat7g186040 Pisum sativum HOM05D002527 ORTHO05D002865 3.4e-38 163.3 121 69.4
AUR62026768 Chenopodium quinoa HOM05D005159 ORTHO05D006237 5.8e-38 162.5 134 64.9
HPP92_015315 Vanilla planifolia HOM05D005159 ORTHO05D006237 1.3e-37 161.4 136 62.5
AUR62011452 Chenopodium quinoa HOM05D005159 ORTHO05D006237 1.7e-37 161.0 173 54.9
Aqoxy3G00614 Aquilegia oxysepala HOM05D005159 ORTHO05D006237 2.2e-37 160.6 234 44.4
ECA240G3626 Erigeron canadensis HOM05D005159 ORTHO05D006237 2.2e-37 160.6 135 61.5
BcaB06g27239 Brassica carinata HOM05D005159 ORTHO05D006237 2.9e-37 160.2 360 38.3
AL7G51700 Arabidopsis lyrata HOM05D005159 ORTHO05D006237 3.8e-37 159.8 136 61.0
Phvul.001G061500 Phaseolus vulgaris HOM05D005159 ORTHO05D006237 4.9e-37 159.5 138 63.8
C06p18340 Brassica napus HOM05D005159 ORTHO05D006237 9.3e-36 155.2 138 62.3
BolC6t37046H Brassica oleracea HOM05D005159 ORTHO05D006237 9.3e-36 155.2 138 62.3
Thhalv10028147m.g Eutrema salsugineum HOM05D005159 ORTHO05D006237 9.3e-36 155.2 359 37.0
SEGI_21798 Sequoiadendron giganteum HOM05D005159 ORTHO05D006237 9.3e-36 155.2 132 59.8
arahy.Tifrunner.gnm1.ann1.3J3UL0 Arachis hypogaea HOM05D005159 ORTHO05D006237 2.1e-35 154.1 138 60.9
Lj6g0020881 Lotus japonicus HOM05D005159 ORTHO05D006237 4.6e-35 152.9 136 60.3
ATR0691G244 Amborella trichopoda HOM05D005159 ORTHO05D006237 7.8e-35 152.1 136 61.0
MBI15_g38433_MAGBIO Magnolia biondii HOM05D005159 ORTHO05D006237 7.8e-35 152.1 325 38.2
CSS0013880 Camellia sinensis var. sinensis HOM05D005159 ORTHO05D006237 1.3e-34 151.4 200 49.0
Sp7g03200 Schrenkiella parvula HOM05D005159 ORTHO05D006237 1.3e-34 151.4 328 38.7
BcaC08g44401 Brassica carinata HOM05D005159 ORTHO05D006237 3.9e-34 149.8 136 61.0
Zm00001eb253420 Zea mays HOM05D005159 ORTHO05D006237 3.9e-34 149.8 136 57.4
CSS0007706 Camellia sinensis var. sinensis HOM05D005159 ORTHO05D006237 1.9e-33 147.5 204 48.0
CSS0044288 Camellia sinensis var. sinensis HOM05D005159 ORTHO05D006237 1.9e-33 147.5 204 48.0
TAR629G0318 Trochodendron aralioides HOM05D005159 ORTHO05D006237 1.3e-32 144.8 111 68.5
Nn8g41096 Nelumbo nucifera HOM05D005159 ORTHO05D006237 2.8e-32 143.7 136 59.6
Lalb_Chr18g0059201 Lupinus albus HOM05D005159 ORTHO05D006237 3.6e-32 143.3 363 38.3
COL.COLO4_37042 Corchorus olitorius HOM05D005159 ORTHO05D006237 4.8e-32 142.9 107 68.2
Os02g0728700 Oryza sativa ssp. japonica HOM05D005159 ORTHO05D006237 8.1e-32 142.1 364 33.8
VMungo1383G3720 Vigna mungo HOM05D005159 ORTHO05D006237 1.4e-31 141.4 345 36.8
TAR371G0967 Trochodendron aralioides HOM05D005159 ORTHO05D006237 2.4e-31 140.6 313 37.1
Carub.0007s3714 Capsella rubella HOM05D005159 ORTHO05D006237 4.0e-31 139.8 373 34.0
Sopen02g034320 Solanum pennellii HOM05D005159 ORTHO05D006237 4.0e-31 139.8 345 36.2
Haze_14082 Corylus avellana HOM05D005159 ORTHO05D006237 2.0e-30 137.5 272 51.5
vmacro18090 Vaccinium macrocarpon HOM05D005159 ORTHO05D006237 2.6e-30 137.1 339 36.3
TPR.G28602 Trifolium pratense HOM05D005159 ORTHO05D006237 4.5e-30 136.3 106 67.0
Pp3c10_24110 Physcomitrium patens HOM05D005159 ORTHO05D006237 1.3e-29 134.8 137 49.6
CARHR291790 Cardamine hirsuta HOM05D005159 ORTHO05D006237 3.8e-29 133.3 140 56.4
CSS0028445 Camellia sinensis var. sinensis HOM05D005159 ORTHO05D006237 2.5e-25 120.6 201 43.3
Rhsim08G0081100 Rhododendron simsii HOM05D005159 ORTHO05D006237 4.3e-25 119.8 371 34.2
TAR629G0746 Trochodendron aralioides HOM05D005159 ORTHO05D006237 6.2e-24 115.9 87 69.0
Mapoly0058s0026 Marchantia polymorpha HOM05D005159 ORTHO05D006237 1.1e-23 115.2 126 47.6
SMO196G0176 Selaginella moellendorffii HOM05D005159 ORTHO05D006237 1.8e-23 114.4 154 42.2
CBR_g4867 Chara braunii HOM05D005159 ORTHO05D006237 1.7e-21 107.8 138 43.5
AUR62013504 Chenopodium quinoa HOM05D000258 ORTHO05D006237 2.4e-20 104.0 89 64.0
Lj7A7T32 Lonicera japonica HOM05D005159 ORTHO05D006237 1.9e-17 94.4 283 31.8
MCO13G254 Micromonas commoda HOM05D005159 ORTHO05D006237 1.9e-17 94.4 132 34.8
AagrBONN_evm.TU.Sc2ySwM_369.363 Anthoceros agrestis HOM05D005159 ORTHO05D006237 1.8e-15 87.8 112 46.4
SMO234G0023 Selaginella moellendorffii HOM05D005159 ORTHO05D006237 1.8e-15 87.8 107 43.0
Medtr8g085830 Medicago truncatula HOM05D005159 ORTHO05D006237 1.2e-14 85.1 99 50.5
arahy.Tifrunner.gnm1.ann1.YDKP0V Arachis hypogaea HOM05D005159 ORTHO05D006237 2.5e-12 77.4 82 53.7
CBR_g52693 Chara braunii HOM05D005159 ORTHO05D006237 2.7e-11 73.9 134 34.3
Cre01.g052200 Chlamydomonas reinhardtii HOM05D005159 ORTHO05D006237 2.7e-11 73.9 143 32.2
Oeu062205.1 Olea europaea HOM05D005159 ORTHO05D006237 2.1e-08 64.3 39 74.4
QL06p007211 Quercus lobata HOM05D005159 ORTHO05D006237 1.1e-07 62.0 57 57.9


User provided reference genes

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