Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0163901 Rosa chinensis HOM05D004745 ORTHO05D005626 3.4e-42 174.5 82 100.0
RcHm_v2.0_Chr2g0136431 Rosa chinensis HOM05D004745 ORTHO05D005626 4.3e-21 104.4 52 96.2
FAN09G2173 Fragaria x ananassa HOM05D004745 ORTHO05D005626 9.6e-21 103.2 52 94.2
FAN02G3524 Fragaria x ananassa HOM05D004745 ORTHO05D005626 1.3e-20 102.8 52 94.2
FvH4_6g30190 Fragaria vesca HOM05D004745 ORTHO05D005626 1.6e-20 102.4 52 94.2
FAN14G5774 Fragaria x ananassa HOM05D004745 ORTHO05D005626 1.6e-20 102.4 52 94.2
Lalb_Chr01g0012481 Lupinus albus HOM05D004745 ORTHO05D005626 1.2e-18 96.3 52 84.6
Prupe.3G081800 Prunus persica HOM05D004745 ORTHO05D005626 1.2e-18 96.3 52 86.5
CiPaw.01G245300 Carya illinoinensis HOM05D004745 ORTHO05D005626 1.5e-18 95.9 52 84.6
CAN.G1158.5 Capsicum annuum HOM05D004745 ORTHO05D005626 2.0e-18 95.5 52 84.6
ClCG07G012760 Citrullus lanatus HOM05D004745 ORTHO05D005626 2.0e-18 95.5 52 84.6
CSS0020299 Camellia sinensis var. sinensis HOM05D004745 ORTHO05D005626 2.6e-18 95.1 52 82.7
Nn8g39406 Nelumbo nucifera HOM05D004745 ORTHO05D005626 2.6e-18 95.1 53 81.1
Sc06g0004020 Simmondsia chinensis HOM05D004745 ORTHO05D005626 2.6e-18 95.1 52 82.7
Ca_20430_v3 Cicer arietinum L. HOM05D004745 ORTHO05D005626 3.4e-18 94.7 52 82.7
Ca_29515_v3 Cicer arietinum L. HOM05D004745 ORTHO05D005626 3.4e-18 94.7 52 82.7
Nitab4.5_0000413g0130 Nicotiana tabacum HOM05D004745 ORTHO05D005626 3.4e-18 94.7 52 84.6
TPR.G38663 Trifolium pratense HOM05D004745 ORTHO05D005626 3.4e-18 94.7 52 82.7
Haze_16523 Corylus avellana HOM05D004745 ORTHO05D005626 4.5e-18 94.4 52 84.6
vmacro18973 Vaccinium macrocarpon HOM05D004745 ORTHO05D005626 4.5e-18 94.4 52 82.7
CANSAT56G2452 Cannabis sativa HOM05D004745 ORTHO05D005626 5.8e-18 94.0 52 82.7
AUR62011549 Chenopodium quinoa HOM05D004745 ORTHO05D005626 5.8e-18 94.0 52 82.7
AUR62016368 Chenopodium quinoa HOM05D004745 ORTHO05D005626 5.8e-18 94.0 52 82.7
Cfa001995 Carpinus fangiana HOM05D004745 ORTHO05D005626 7.6e-18 93.6 52 82.7
Gohir.A10G075700 Gossypium hirsutum HOM05D004745 ORTHO05D005626 7.6e-18 93.6 52 82.7
Gohir.D10G075900 Gossypium hirsutum HOM05D004745 ORTHO05D005626 7.6e-18 93.6 52 82.7
Gorai.011G081700 Gossypium raimondii HOM05D004745 ORTHO05D005626 7.6e-18 93.6 52 82.7
Manes.11G053800 Manihot esculenta HOM05D004745 ORTHO05D005626 7.6e-18 93.6 52 82.7
PGSC0003DMG400029962 Solanum tuberosum HOM05D004745 ORTHO05D005626 7.6e-18 93.6 52 82.7
Actinidia01762 Actinidia chinensis HOM05D004745 ORTHO05D005626 1.0e-17 93.2 52 80.8
Actinidia15789 Actinidia chinensis HOM05D004745 ORTHO05D005626 1.0e-17 93.2 52 80.8
Cpa.g.sc10.231 Carica papaya HOM05D004745 ORTHO05D005626 1.0e-17 93.2 52 82.7
Potri.001G171800 Populus trichocarpa HOM05D004745 ORTHO05D005626 1.0e-17 93.2 52 82.7
Rhsim08G0215400 Rhododendron simsii HOM05D004745 ORTHO05D005626 1.0e-17 93.2 52 80.8
Sabra01G0139800 Salix brachista HOM05D004745 ORTHO05D005626 1.0e-17 93.2 52 82.7
Duzib235G0601 Durio zibethinus HOM05D004745 ORTHO05D005626 1.3e-17 92.8 52 84.6
Psat7g255920 Pisum sativum HOM05D004745 ORTHO05D005626 1.3e-17 92.8 52 80.8
CsaV3_4G001440 Cucumis sativus L. HOM05D004745 ORTHO05D005626 1.7e-17 92.4 52 82.7
Eucgr.F02539 Eucalyptus grandis HOM05D004745 ORTHO05D005626 1.7e-17 92.4 52 80.8
Nitab4.5_0009683g0020 Nicotiana tabacum HOM05D004745 ORTHO05D005626 1.7e-17 92.4 52 80.8
Peaxi162Scf00320g00620 Petunia axillaris HOM05D004745 ORTHO05D005626 1.7e-17 92.4 52 80.8
QL05p028225 Quercus lobata HOM05D004745 ORTHO05D005626 1.7e-17 92.4 52 82.7
Lj3g0003662 Lotus japonicus HOM05D004745 ORTHO05D005626 2.2e-17 92.0 52 80.8
PGR102G0579 Punica granatum HOM05D004745 ORTHO05D005626 2.2e-17 92.0 52 80.8
Sed0026286 Sechium edule HOM05D004745 ORTHO05D005626 2.2e-17 92.0 52 80.8
Thecc.06G070400 Theobroma cacao HOM05D004745 ORTHO05D005626 2.2e-17 92.0 52 80.8
DCAR_025491 Daucus carota HOM05D004745 ORTHO05D005626 2.9e-17 91.7 52 78.8
Phvul.010G154200 Phaseolus vulgaris HOM05D004745 ORTHO05D005626 2.9e-17 91.7 52 78.8
VMungo0331G1340 Vigna mungo HOM05D004745 ORTHO05D005626 2.9e-17 91.7 52 78.8
arahy.Tifrunner.gnm1.ann1.Q3QYYY Arachis hypogaea HOM05D004745 ORTHO05D005626 3.8e-17 91.3 52 78.8
COL.COLO4_12918 Corchorus olitorius HOM05D004745 ORTHO05D005626 4.9e-17 90.9 52 78.8
Solyc07g015860.3 Solanum lycopersicum HOM05D004745 ORTHO05D005626 4.9e-17 90.9 52 80.8
Cc04_g04150 Coffea canephora HOM05D004745 ORTHO05D005626 6.5e-17 90.5 52 78.8
ECA238G2546 Erigeron canadensis HOM05D004745 ORTHO05D005626 8.4e-17 90.1 52 78.8
TAR636G0831 Trochodendron aralioides HOM05D004745 ORTHO05D005626 8.4e-17 90.1 52 78.8
Aa31LG7G150 Aethionema arabicum HOM05D004745 ORTHO05D005626 1.1e-16 89.7 52 78.8
arahy.Tifrunner.gnm1.ann1.EYL5YU Arachis hypogaea HOM05D004745 ORTHO05D005626 1.1e-16 89.7 52 76.9
GSVIVG01017280001 Vitis vinifera HOM05D004745 ORTHO05D005626 1.1e-16 89.7 52 82.7
Hund06573 Selenicereus undatus HOM05D004745 ORTHO05D005626 1.4e-16 89.4 52 76.9
Lj9A502G38 Lonicera japonica HOM05D004745 ORTHO05D005626 1.9e-16 89.0 52 78.8
SGA_v2.0_scaffold5G02669 Striga asiatica HOM05D004745 ORTHO05D005626 2.5e-16 88.6 52 78.8
MD13G1166000 Malus domestica HOM05D004745 ORTHO05D005626 3.2e-16 88.2 50 80.0
MSTRG.22729 Avicennia marina HOM05D004745 ORTHO05D005626 4.2e-16 87.8 52 75.0
Glyma.08G210900 Glycine max HOM05D004745 ORTHO05D005626 4.2e-16 87.8 52 76.9
HanXRQChr10g0303121 Helianthus annuus HOM05D004745 ORTHO05D005626 4.2e-16 87.8 52 76.9
Atru.chr1.3054 Acer truncatum HOM05D004745 ORTHO05D005626 5.5e-16 87.4 52 76.9
EL10Ac9g21930 Beta vulgaris HOM05D004745 ORTHO05D005626 5.5e-16 87.4 52 76.9
Lsat_1_v5_gn_5_132160 Lactuca sativa HOM05D004745 ORTHO05D005626 5.5e-16 87.4 52 75.0
THA.LOC104808227 Tarenaya hassleriana HOM05D004745 ORTHO05D005626 5.5e-16 87.4 52 75.0
Peaxi162Scf00320g00617 Petunia axillaris HOM05D004745 ORTHO05D005626 7.1e-16 87.0 50 80.0
HPP92_024132 Vanilla planifolia HOM05D004745 ORTHO05D005626 7.1e-16 87.0 52 76.9
Ciclev10026288m.g Citrus clementina HOM05D004745 ORTHO05D005626 9.3e-16 86.7 52 76.9
Oeu000434.1 Olea europaea HOM05D004745 ORTHO05D005626 9.3e-16 86.7 52 76.9
Lalb_Chr14g0373711 Lupinus albus HOM05D004745 ORTHO05D005626 1.2e-15 86.3 52 73.1
Os01g0555800 Oryza sativa ssp. japonica HOM05D004745 ORTHO05D005626 1.2e-15 86.3 52 76.9
PSO170G2068 Papaver somniferum HOM05D004745 ORTHO05D005626 1.6e-15 85.9 52 75.0
PSO455G0289 Papaver somniferum HOM05D004745 ORTHO05D005626 1.6e-15 85.9 52 75.0
TWI12G1169 Tripterygium wilfordii HOM05D004745 ORTHO05D005626 1.6e-15 85.9 52 75.0
Aqoxy7G02119 Aquilegia oxysepala HOM05D004745 ORTHO05D005626 2.1e-15 85.5 52 73.1
Thhalv10008467m.g Eutrema salsugineum HOM05D004745 ORTHO05D005626 2.1e-15 85.5 52 73.1
Ca_01071_v3 Cicer arietinum L. HOM05D004745 ORTHO05D005626 2.7e-15 85.1 52 75.0
MBI04_g07638_MAGBIO Magnolia biondii HOM05D004745 ORTHO05D005626 2.7e-15 85.1 52 75.0
BcaC05g25486 Brassica carinata HOM05D004745 ORTHO05D005626 3.5e-15 84.7 52 73.1
A06p11430 Brassica napus HOM05D004745 ORTHO05D005626 3.5e-15 84.7 52 73.1
C05p13550 Brassica napus HOM05D004745 ORTHO05D005626 3.5e-15 84.7 52 73.1
BolC5t30092H Brassica oleracea HOM05D004745 ORTHO05D005626 3.5e-15 84.7 52 73.1
BraA06t24321Z Brassica rapa HOM05D004745 ORTHO05D005626 3.5e-15 84.7 52 73.1
Carub.0001s1517 Capsella rubella HOM05D004745 ORTHO05D005626 4.6e-15 84.3 52 73.1
TWI18G0786 Tripterygium wilfordii HOM05D004745 ORTHO05D005626 4.6e-15 84.3 52 71.2
Lsat_1_v5_gn_4_105820 Lactuca sativa HOM05D004745 ORTHO05D005626 6.0e-15 84.0 52 71.2
ATR1156G012 Amborella trichopoda HOM05D004745 ORTHO05D005626 1.3e-14 82.8 52 71.2
Migut.I00794 Erythranthe guttata HOM05D004745 ORTHO05D005626 1.3e-14 82.8 52 73.1
Medtr4g011040 Medicago truncatula HOM05D004745 ORTHO05D005626 1.3e-14 82.8 52 71.2
AL1G27500 Arabidopsis lyrata HOM05D004745 ORTHO05D005626 1.8e-14 82.4 52 71.2
AT1G15390 Arabidopsis thaliana HOM05D004745 ORTHO05D005626 1.8e-14 82.4 52 71.2
Sp1g13740 Schrenkiella parvula HOM05D004745 ORTHO05D005626 1.8e-14 82.4 52 71.2
TPR.G37193 Trifolium pratense HOM05D004745 ORTHO05D005626 1.8e-14 82.4 52 73.1
HanXRQChr05g0131081 Helianthus annuus HOM05D004745 ORTHO05D005626 3.0e-14 81.6 77 54.5
CARHR015930 Cardamine hirsuta HOM05D004745 ORTHO05D005626 6.7e-14 80.5 52 69.2
ECA246G2906 Erigeron canadensis HOM05D004745 ORTHO05D005626 6.7e-14 80.5 54 66.7
HanXRQChr16g0500481 Helianthus annuus HOM05D004745 ORTHO05D005626 6.7e-14 80.5 52 69.2
Medtr2g103430 Medicago truncatula HOM05D004745 ORTHO05D005626 6.7e-14 80.5 52 71.2
Psat5g301200 Pisum sativum HOM05D004745 ORTHO05D005626 6.7e-14 80.5 52 69.2
BolC8t52045H Brassica oleracea HOM05D004745 ORTHO05D005626 8.7e-14 80.1 52 67.3
ECA248G1182 Erigeron canadensis HOM05D004745 ORTHO05D005626 8.7e-14 80.1 54 64.8
Hma1.2p1_0394F.1_g143470 Hydrangea macrophylla HOM05D004745 ORTHO05D005626 8.7e-14 80.1 50 72.0
ECA232G3489 Erigeron canadensis HOM05D004745 ORTHO05D005626 1.1e-13 79.7 52 65.4
ECA234G2450 Erigeron canadensis HOM05D004745 ORTHO05D005626 1.1e-13 79.7 52 65.4
ECA238G4104 Erigeron canadensis HOM05D004745 ORTHO05D005626 1.1e-13 79.7 52 65.4
ECA240G0712 Erigeron canadensis HOM05D004745 ORTHO05D005626 1.1e-13 79.7 52 65.4
BcaC05g25480 Brassica carinata HOM05D004745 ORTHO05D005626 1.5e-13 79.3 52 67.3
BcaC07g41503 Brassica carinata HOM05D004745 ORTHO05D005626 1.5e-13 79.3 52 67.3
A09p61430 Brassica napus HOM05D004745 ORTHO05D005626 1.5e-13 79.3 52 67.3
C08p44990 Brassica napus HOM05D004745 ORTHO05D005626 1.5e-13 79.3 52 67.3
BraA09t41514Z Brassica rapa HOM05D004745 ORTHO05D005626 1.5e-13 79.3 52 67.3
Lj3g0018837 Lotus japonicus HOM05D004745 ORTHO05D005626 1.5e-13 79.3 65 64.6
BcaB03g14542 Brassica carinata HOM05D004745 ORTHO05D005626 2.5e-13 78.6 52 67.3
Sopen07g005700 Solanum pennellii HOM05D004745 ORTHO05D005626 2.5e-13 78.6 79 53.2
MD17G1207300 Malus domestica HOM05D004745 ORTHO05D005626 5.7e-13 77.4 43 79.1
unitig_747.g21294 Utricularia gibba HOM05D004745 ORTHO05D005626 7.4e-13 77.0 52 65.4
VMungo1080G0321 Vigna mungo HOM05D004745 ORTHO05D005626 7.4e-13 77.0 52 67.3
ECA234G1027 Erigeron canadensis HOM05D004745 ORTHO05D005626 9.6e-13 76.6 52 65.4
ECA238G0294 Erigeron canadensis HOM05D004745 ORTHO05D005626 9.6e-13 76.6 52 63.5
ECA233G1751 Erigeron canadensis HOM05D004745 ORTHO05D005626 1.6e-12 75.9 52 63.5
Phvul.005G175900 Phaseolus vulgaris HOM05D004745 ORTHO05D005626 1.6e-12 75.9 52 63.5
Pp3c2_27110 Physcomitrium patens HOM05D004745 ORTHO05D005626 2.4e-11 72.0 53 66.0
SalBow2G2198 Salvia bowleyana HOM05D004745 ORTHO05D005626 2.4e-11 72.0 61 59.0
CBR_g8594 Chara braunii HOM05D004745 ORTHO05D005626 3.1e-11 71.6 52 61.5
Glyma.15G009700 Glycine max HOM05D004745 ORTHO05D005626 3.1e-11 71.6 52 61.5
SMO229G0001 Selaginella moellendorffii HOM05D004745 ORTHO05D005626 4.0e-11 71.2 54 64.8
Pp3c1_9250 Physcomitrium patens HOM05D004745 ORTHO05D005626 1.5e-10 69.3 53 66.0
Mapoly0061s0037 Marchantia polymorpha HOM05D004745 ORTHO05D005626 4.5e-10 67.8 53 62.3
Mapoly0285s0003 Marchantia polymorpha HOM05D004745 ORTHO05D005626 4.5e-10 67.8 53 62.3
Medtr2g103420 Medicago truncatula HOM05D004745 ORTHO05D005626 3.8e-09 64.7 52 59.6
PRCOL_00006240 Prasinoderma coloniale HOM05D004745 ORTHO05D005626 7.9e-07 57.0 52 50.0
MCO13G487 Micromonas commoda HOM05D004745 ORTHO05D005626 1.8e-06 55.8 52 50.0


User provided reference genes

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