Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0163721 Rosa chinensis HOM05D005714 ORTHO05D006812 2.1e-49 198.7 102 100.0
RcHm_v2.0_Chr2g0163761 Rosa chinensis HOM05D005714 ORTHO05D006812 9.8e-31 136.7 71 98.6
FvH4_6g45610 Fragaria vesca HOM05D005714 ORTHO05D006812 2.2e-30 135.6 71 97.2
FAN09G3422 Fragaria x ananassa HOM05D005714 ORTHO05D006812 2.2e-30 135.6 73 93.2
Cfa007975 Carpinus fangiana HOM05D005714 ORTHO05D006812 8.0e-25 117.1 76 77.6
Cfa007977 Carpinus fangiana HOM05D001801 ORTHO05D001739 1.0e-24 116.7 71 83.1
Potri.004G105400 Populus trichocarpa HOM05D005714 ORTHO05D006812 1.8e-24 115.9 71 83.1
CiPaw.03G006400 Carya illinoinensis HOM05D005714 ORTHO05D006812 5.2e-24 114.4 71 81.7
Prupe.3G242300 Prunus persica HOM05D005714 ORTHO05D006812 6.8e-24 114.0 70 84.3
MD09G1081200 Malus domestica HOM05D005714 ORTHO05D006812 8.9e-24 113.6 70 84.3
Lj7A8G44 Lonicera japonica HOM05D005714 ORTHO05D006812 1.5e-23 112.8 71 80.3
Sabra04G0076700 Salix brachista HOM05D005714 ORTHO05D006812 2.0e-23 112.5 71 80.3
CSS0016024 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 2.6e-23 112.1 71 80.3
Potri.017G110300 Populus trichocarpa HOM05D005714 ORTHO05D006812 2.6e-23 112.1 74 79.7
CSS0020756 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 3.4e-23 111.7 71 80.3
ECA232G3066 Erigeron canadensis HOM05D005714 ORTHO05D006812 4.4e-23 111.3 71 77.5
TWI74G1644 Tripterygium wilfordii HOM05D005714 ORTHO05D006812 7.5e-23 110.5 70 81.4
Gohir.D11G174600 Gossypium hirsutum HOM05D005714 ORTHO05D006812 1.7e-22 109.4 71 78.9
Gorai.007G187100 Gossypium raimondii HOM05D005714 ORTHO05D006812 1.7e-22 109.4 71 78.9
Duzib138G1804 Durio zibethinus HOM05D005714 ORTHO05D006812 2.2e-22 109.0 71 77.5
Peaxi162Scf00479g00037 Petunia axillaris HOM05D005714 ORTHO05D006812 2.8e-22 108.6 71 74.6
MD17G1072600 Malus domestica HOM05D005714 ORTHO05D006812 3.7e-22 108.2 70 81.4
Sabra17G0092200 Salix brachista HOM05D005714 ORTHO05D006812 3.7e-22 108.2 70 80.0
COL.COLO4_03920 Corchorus olitorius HOM05D005714 ORTHO05D006812 4.9e-22 107.8 71 78.9
Cpa.g.sc179.47 Carica papaya HOM05D005714 ORTHO05D006812 6.3e-22 107.5 71 77.5
Nn3g17645 Nelumbo nucifera HOM05D005714 ORTHO05D006812 6.3e-22 107.5 71 77.5
Manes.02G065100 Manihot esculenta HOM05D005714 ORTHO05D006812 1.1e-21 106.7 71 78.9
THA.LOC104802994 Tarenaya hassleriana HOM05D005714 ORTHO05D006812 1.4e-21 106.3 71 77.5
Dinv33913 Davidia involucrata HOM05D005714 ORTHO05D006812 1.8e-21 105.9 71 74.6
Nitab4.5_0000612g0140 Nicotiana tabacum HOM05D005714 ORTHO05D006812 1.8e-21 105.9 71 74.6
Nitab4.5_0003161g0010 Nicotiana tabacum HOM05D005714 ORTHO05D006812 1.8e-21 105.9 71 74.6
PGSC0003DMG400018763 Solanum tuberosum HOM05D005714 ORTHO05D006812 2.4e-21 105.5 71 74.6
CANSAT64G2721 Cannabis sativa HOM05D005714 ORTHO05D006812 3.1e-21 105.1 71 76.1
Thecc.04G144400 Theobroma cacao HOM05D005714 ORTHO05D006812 3.1e-21 105.1 71 76.1
Oeu032870.1 Olea europaea HOM05D005714 ORTHO05D006812 4.1e-21 104.8 71 69.0
Lsat_1_v5_gn_4_175801 Lactuca sativa HOM05D005714 ORTHO05D006812 5.4e-21 104.4 67 80.6
Rhsim10G0064900 Rhododendron simsii HOM05D005714 ORTHO05D006812 5.4e-21 104.4 68 77.9
Actinidia18116 Actinidia chinensis HOM05D005714 ORTHO05D006812 7.0e-21 104.0 71 73.2
Eucgr.J01456 Eucalyptus grandis HOM05D005714 ORTHO05D006812 2.0e-20 102.4 71 71.8
GSVIVG01036468001 Vitis vinifera HOM05D005714 ORTHO05D006812 2.7e-20 102.1 65 76.9
AT5G15880 Arabidopsis thaliana HOM05D005714 ORTHO05D006812 3.5e-20 101.7 70 75.7
CARHR197420 Cardamine hirsuta HOM05D005714 ORTHO05D006812 3.5e-20 101.7 71 74.6
HanXRQChr15g0490211 Helianthus annuus HOM05D005714 ORTHO05D006812 4.5e-20 101.3 71 73.2
Lalb_Chr21g0317991 Lupinus albus HOM05D005714 ORTHO05D006812 4.5e-20 101.3 79 62.0
vmacro05584 Vaccinium macrocarpon HOM05D005714 ORTHO05D006812 4.5e-20 101.3 68 76.5
Lj2g0024465 Lotus japonicus HOM05D005714 ORTHO05D006812 5.9e-20 100.9 69 71.0
Aa31LG11G13710 Aethionema arabicum HOM05D005714 ORTHO05D006812 7.8e-20 100.5 71 71.8
BolC3t13356H Brassica oleracea HOM05D005714 ORTHO05D006812 7.8e-20 100.5 71 73.2
BraA03t10072Z Brassica rapa HOM05D005714 ORTHO05D006812 7.8e-20 100.5 71 73.2
Sp6g28230 Schrenkiella parvula HOM05D005714 ORTHO05D006812 7.8e-20 100.5 71 73.2
Atru.BG.225.p Acer truncatum HOM05D005714 ORTHO05D006812 1.0e-19 100.1 73 74.0
C03p08510 Brassica napus HOM05D005714 ORTHO05D006812 1.0e-19 100.1 71 73.2
Carub.0006s1407 Capsella rubella HOM05D005714 ORTHO05D006812 1.0e-19 100.1 70 74.3
BraA10t44382Z Brassica rapa HOM05D005714 ORTHO05D006812 2.9e-19 98.6 71 71.8
Thhalv10015850m.g Eutrema salsugineum HOM05D005714 ORTHO05D006812 2.9e-19 98.6 71 71.8
Actinidia36301 Actinidia chinensis HOM05D005714 ORTHO05D006812 3.8e-19 98.2 70 70.0
Glyma.19G041200 Glycine max HOM05D005714 ORTHO05D006812 6.6e-19 97.4 70 71.4
A03p07460 Brassica napus HOM05D005714 ORTHO05D006812 8.6e-19 97.1 71 71.8
Sc10g0001430 Simmondsia chinensis HOM05D005714 ORTHO05D006812 8.6e-19 97.1 74 67.6
CSS0044543 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 1.1e-18 96.7 72 70.8
CSS0047938 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 1.1e-18 96.7 72 70.8
VMungo0464G1377 Vigna mungo HOM05D005714 ORTHO05D006812 1.1e-18 96.7 71 71.8
Phvul.004G049100 Phaseolus vulgaris HOM05D005714 ORTHO05D006812 1.9e-18 95.9 71 69.0
C03p08640 Brassica napus HOM05D005714 ORTHO05D006812 2.5e-18 95.5 71 71.8
BolC3t13366H Brassica oleracea HOM05D005714 ORTHO05D006812 2.5e-18 95.5 71 71.8
BraA03t10075Z Brassica rapa HOM05D005714 ORTHO05D006812 2.5e-18 95.5 71 71.8
Ca_20731_v3 Cicer arietinum L. HOM05D005714 ORTHO05D006812 3.3e-18 95.1 70 65.7
Migut.H00540 Erythranthe guttata HOM05D005714 ORTHO05D006812 3.3e-18 95.1 68 73.5
MBI15_g36941_MAGBIO Magnolia biondii HOM05D005714 ORTHO05D006812 4.3e-18 94.7 67 74.6
RcHm_v2.0_Chr2g0163711 Rosa chinensis HOM05D005714 ORTHO05D006812 4.3e-18 94.7 67 79.1
AL6G26770 Arabidopsis lyrata HOM05D005714 ORTHO05D006812 5.6e-18 94.4 70 72.9
AL6G26782 Arabidopsis lyrata HOM05D005714 ORTHO05D006812 5.6e-18 94.4 70 72.9
MSTRG.2945 Avicennia marina HOM05D005714 ORTHO05D006812 5.6e-18 94.4 68 69.1
SalBow1G2935 Salvia bowleyana HOM05D005714 ORTHO05D006812 5.6e-18 94.4 68 69.1
MELO3C023776.2 Cucumis melo HOM05D005714 ORTHO05D006812 7.3e-18 94.0 71 67.6
BcaB08g36870 Brassica carinata HOM05D005714 ORTHO05D006812 9.5e-18 93.6 72 68.1
SalBow1G3421 Salvia bowleyana HOM05D005714 ORTHO05D006812 1.2e-17 93.2 68 67.6
BolC9t58957H Brassica oleracea HOM05D005714 ORTHO05D006812 1.6e-17 92.8 71 70.4
CAN.G551.30 Capsicum annuum HOM05D005714 ORTHO05D006812 1.6e-17 92.8 64 75.0
PGR042G2576 Punica granatum HOM05D005714 ORTHO05D006812 2.1e-17 92.4 71 70.4
Aqoxy3G03832 Aquilegia oxysepala HOM05D005714 ORTHO05D006812 2.8e-17 92.0 70 70.0
A10p17320 Brassica napus HOM05D000327 ORTHO05D006812 2.8e-17 92.0 71 66.2
Ah.10g037360 Amaranthus hybridus HOM05D005714 ORTHO05D006812 4.7e-17 91.3 68 67.6
Ciclev10012317m.g Citrus clementina HOM05D005714 ORTHO05D006812 8.0e-17 90.5 75 65.3
ClCG05G011990 Citrullus lanatus HOM05D005714 ORTHO05D006812 1.4e-16 89.7 69 66.7
Sed0016830 Sechium edule HOM05D005714 ORTHO05D006812 1.8e-16 89.4 68 67.6
Cc07_g04960 Coffea canephora HOM05D005714 ORTHO05D006812 3.0e-16 88.6 72 69.4
Medtr6g016870 Medicago truncatula HOM05D005714 ORTHO05D006812 4.0e-16 88.2 70 61.4
AUR62014554 Chenopodium quinoa HOM05D005714 ORTHO05D006812 5.2e-16 87.8 66 68.2
AUR62008947 Chenopodium quinoa HOM05D005714 ORTHO05D006812 6.8e-16 87.4 66 68.2
SGA_v2.0_scaffold204G41660 Striga asiatica HOM05D005714 ORTHO05D006812 6.8e-16 87.4 68 61.8
CsaV3_3G020470 Cucumis sativus L. HOM05D005714 ORTHO05D006812 8.9e-16 87.0 69 63.8
BcaB01g05015 Brassica carinata HOM05D005714 ORTHO05D006812 1.2e-15 86.7 78 61.5
Hund16108 Selenicereus undatus HOM05D005714 ORTHO05D006812 7.5e-15 84.0 68 67.6
EL10Ac2g04627 Beta vulgaris HOM05D005714 ORTHO05D006812 1.7e-14 82.8 72 62.5
Os09g0108400 Oryza sativa ssp. japonica HOM05D005714 ORTHO05D006812 1.7e-14 82.8 63 66.7
unitig_899.g15126 Utricularia gibba HOM05D005714 ORTHO05D006812 2.9e-14 82.0 68 58.8
PSO063G3590 Papaver somniferum HOM05D005714 ORTHO05D006812 1.1e-13 80.1 71 62.0
CDE02G2817 Ceratophyllum demersum HOM05D005714 ORTHO05D006812 1.8e-13 79.3 68 60.3
PSO782G2399 Papaver somniferum HOM05D005714 ORTHO05D006812 2.4e-13 79.0 71 60.6
HPP92_027404 Vanilla planifolia HOM05D005714 ORTHO05D006812 2.4e-13 79.0 66 62.1
arahy.Tifrunner.gnm1.ann1.R8VTVZ Arachis hypogaea HOM05D005714 ORTHO05D006812 2.0e-12 75.9 86 51.2
Zm00001eb208920 Zea mays HOM05D005714 ORTHO05D006812 5.0e-11 71.2 65 60.0
ATR0752G036 Amborella trichopoda HOM05D005714 ORTHO05D006812 3.3e-10 68.6 62 62.9
arahy.Tifrunner.gnm1.ann1.AEQW57 Arachis hypogaea HOM05D005714 ORTHO05D006812 4.3e-10 68.2 71 53.5
C09p61150 Brassica napus HOM05D005714 ORTHO05D006812 5.6e-10 67.8 49 69.4
TPR.G9671 Trifolium pratense HOM05D005714 ORTHO05D006812 2.8e-09 65.5 70 48.6
BcaC04g18926 Brassica carinata HOM05D005714 ORTHO05D006812 4.7e-09 64.7 68 54.4
RcHm_v2.0_Chr2g0163621 Rosa chinensis HOM05D005714 ORTHO05D006812 4.7e-09 64.7 34 91.2
QL02p053457 Quercus lobata HOM05D005714 ORTHO05D006812 1.8e-08 62.8 71 54.9


User provided reference genes

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