Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0163711 Rosa chinensis HOM05D005714 ORTHO05D006812 7.2e-40 166.8 83 100.0
FvH4_6g45610 Fragaria vesca HOM05D005714 ORTHO05D006812 7.2e-24 113.6 77 79.2
RcHm_v2.0_Chr2g0163761 Rosa chinensis HOM05D005714 ORTHO05D006812 9.4e-24 113.2 77 79.2
MD09G1081200 Malus domestica HOM05D005714 ORTHO05D006812 2.2e-20 102.1 77 74.0
MD17G1072600 Malus domestica HOM05D005714 ORTHO05D006812 4.1e-19 97.8 77 68.8
Prupe.3G242300 Prunus persica HOM05D005714 ORTHO05D006812 5.3e-19 97.4 77 68.8
RcHm_v2.0_Chr2g0163721 Rosa chinensis HOM05D005714 ORTHO05D006812 5.3e-19 97.4 67 79.1
Sabra17G0092200 Salix brachista HOM05D005714 ORTHO05D006812 5.3e-19 97.4 77 67.5
CSS0016024 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 7.0e-19 97.1 77 67.5
CSS0020756 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 9.1e-19 96.7 77 67.5
Lj7A8G44 Lonicera japonica HOM05D005714 ORTHO05D006812 9.1e-19 96.7 77 67.5
Potri.017G110300 Populus trichocarpa HOM05D005714 ORTHO05D006812 9.1e-19 96.7 77 68.8
Dinv33913 Davidia involucrata HOM05D005714 ORTHO05D006812 1.6e-18 95.9 72 69.4
A03p07460 Brassica napus HOM05D005714 ORTHO05D006812 2.7e-18 95.1 77 63.6
CANSAT64G2721 Cannabis sativa HOM05D005714 ORTHO05D006812 2.7e-18 95.1 77 67.5
CiPaw.03G006400 Carya illinoinensis HOM05D005714 ORTHO05D006812 3.5e-18 94.7 77 66.2
FAN09G3422 Fragaria x ananassa HOM05D005714 ORTHO05D006812 3.5e-18 94.7 66 78.8
Peaxi162Scf00479g00037 Petunia axillaris HOM05D005714 ORTHO05D006812 3.5e-18 94.7 77 64.9
Nitab4.5_0000612g0140 Nicotiana tabacum HOM05D005714 ORTHO05D006812 4.5e-18 94.4 79 64.6
Nitab4.5_0003161g0010 Nicotiana tabacum HOM05D005714 ORTHO05D006812 4.5e-18 94.4 79 64.6
TWI74G1644 Tripterygium wilfordii HOM05D005714 ORTHO05D006812 5.9e-18 94.0 77 67.5
C03p08640 Brassica napus HOM05D005714 ORTHO05D006812 7.7e-18 93.6 77 63.6
BolC3t13366H Brassica oleracea HOM05D005714 ORTHO05D006812 7.7e-18 93.6 77 63.6
BraA03t10075Z Brassica rapa HOM05D005714 ORTHO05D006812 7.7e-18 93.6 77 63.6
Lsat_1_v5_gn_4_175801 Lactuca sativa HOM05D005714 ORTHO05D006812 1.0e-17 93.2 78 65.4
Potri.004G105400 Populus trichocarpa HOM05D005714 ORTHO05D006812 1.0e-17 93.2 77 64.9
Rhsim10G0064900 Rhododendron simsii HOM05D005714 ORTHO05D006812 1.0e-17 93.2 72 68.1
Sabra04G0076700 Salix brachista HOM05D005714 ORTHO05D006812 1.0e-17 93.2 77 64.9
PGSC0003DMG400018763 Solanum tuberosum HOM05D005714 ORTHO05D006812 1.3e-17 92.8 79 63.3
GSVIVG01036468001 Vitis vinifera HOM05D005714 ORTHO05D006812 1.3e-17 92.8 74 64.9
AT5G15880 Arabidopsis thaliana HOM05D005714 ORTHO05D006812 2.9e-17 91.7 77 64.9
MSTRG.2945 Avicennia marina HOM05D005714 ORTHO05D006812 2.9e-17 91.7 72 66.7
Duzib138G1804 Durio zibethinus HOM05D005714 ORTHO05D006812 2.9e-17 91.7 74 67.6
Manes.02G065100 Manihot esculenta HOM05D005714 ORTHO05D006812 2.9e-17 91.7 74 67.6
COL.COLO4_03920 Corchorus olitorius HOM05D005714 ORTHO05D006812 5.0e-17 90.9 74 67.6
BraA03t10072Z Brassica rapa HOM05D005714 ORTHO05D006812 6.5e-17 90.5 79 62.0
CARHR197420 Cardamine hirsuta HOM05D005714 ORTHO05D006812 6.5e-17 90.5 77 63.6
Cfa007977 Carpinus fangiana HOM05D001801 ORTHO05D001739 6.5e-17 90.5 77 63.6
ECA232G3066 Erigeron canadensis HOM05D005714 ORTHO05D006812 6.5e-17 90.5 77 61.0
THA.LOC104802994 Tarenaya hassleriana HOM05D005714 ORTHO05D006812 8.5e-17 90.1 77 64.9
Actinidia18116 Actinidia chinensis HOM05D005714 ORTHO05D006812 1.1e-16 89.7 72 65.3
AL6G26770 Arabidopsis lyrata HOM05D005714 ORTHO05D006812 1.1e-16 89.7 77 63.6
AL6G26782 Arabidopsis lyrata HOM05D005714 ORTHO05D006812 1.1e-16 89.7 77 63.6
C03p08510 Brassica napus HOM05D005714 ORTHO05D006812 1.5e-16 89.4 77 62.3
BolC3t13356H Brassica oleracea HOM05D005714 ORTHO05D006812 1.5e-16 89.4 77 62.3
Sp6g28230 Schrenkiella parvula HOM05D005714 ORTHO05D006812 1.5e-16 89.4 77 62.3
Aa31LG11G13710 Aethionema arabicum HOM05D005714 ORTHO05D006812 1.9e-16 89.0 77 61.0
Carub.0006s1407 Capsella rubella HOM05D005714 ORTHO05D006812 1.9e-16 89.0 77 62.3
Ca_20731_v3 Cicer arietinum L. HOM05D005714 ORTHO05D006812 1.9e-16 89.0 74 62.2
Oeu032870.1 Olea europaea HOM05D005714 ORTHO05D006812 3.2e-16 88.2 75 58.7
Sed0016830 Sechium edule HOM05D005714 ORTHO05D006812 3.2e-16 88.2 74 63.5
ClCG05G011990 Citrullus lanatus HOM05D005714 ORTHO05D006812 4.2e-16 87.8 74 63.5
Eucgr.J01456 Eucalyptus grandis HOM05D005714 ORTHO05D006812 4.2e-16 87.8 77 59.7
Thhalv10015850m.g Eutrema salsugineum HOM05D005714 ORTHO05D006812 5.5e-16 87.4 77 61.0
Glyma.19G041200 Glycine max HOM05D005714 ORTHO05D006812 5.5e-16 87.4 75 65.3
Migut.H00540 Erythranthe guttata HOM05D005714 ORTHO05D006812 9.4e-16 86.7 64 68.8
Actinidia36301 Actinidia chinensis HOM05D005714 ORTHO05D006812 1.2e-15 86.3 72 61.1
Thecc.04G144400 Theobroma cacao HOM05D005714 ORTHO05D006812 1.2e-15 86.3 74 63.5
VMungo0464G1377 Vigna mungo HOM05D005714 ORTHO05D006812 1.2e-15 86.3 78 62.8
CAN.G551.30 Capsicum annuum HOM05D005714 ORTHO05D006812 1.6e-15 85.9 76 64.5
Nn3g17645 Nelumbo nucifera HOM05D005714 ORTHO05D006812 1.6e-15 85.9 75 62.7
PGR042G2576 Punica granatum HOM05D005714 ORTHO05D006812 1.6e-15 85.9 77 61.0
SalBow1G2935 Salvia bowleyana HOM05D005714 ORTHO05D006812 1.6e-15 85.9 77 57.1
BraA10t44382Z Brassica rapa HOM05D005714 ORTHO05D006812 2.7e-15 85.1 77 59.7
Cpa.g.sc179.47 Carica papaya HOM05D005714 ORTHO05D006812 2.7e-15 85.1 77 61.0
Lj2g0024465 Lotus japonicus HOM05D005714 ORTHO05D006812 2.7e-15 85.1 77 59.7
MBI15_g36941_MAGBIO Magnolia biondii HOM05D005714 ORTHO05D006812 3.6e-15 84.7 72 62.5
SalBow1G3421 Salvia bowleyana HOM05D005714 ORTHO05D006812 3.6e-15 84.7 77 55.8
Ah.10g037360 Amaranthus hybridus HOM05D005714 ORTHO05D006812 4.7e-15 84.3 77 58.4
CsaV3_3G020470 Cucumis sativus L. HOM05D005714 ORTHO05D006812 6.1e-15 84.0 77 58.4
Sc10g0001430 Simmondsia chinensis HOM05D005714 ORTHO05D006812 6.1e-15 84.0 77 58.4
Aqoxy3G03832 Aquilegia oxysepala HOM05D005714 ORTHO05D006812 1.0e-14 83.2 77 58.4
Lalb_Chr21g0317991 Lupinus albus HOM05D005714 ORTHO05D006812 1.4e-14 82.8 75 60.0
Phvul.004G049100 Phaseolus vulgaris HOM05D005714 ORTHO05D006812 1.4e-14 82.8 78 60.3
Medtr6g016870 Medicago truncatula HOM05D005714 ORTHO05D006812 1.8e-14 82.4 74 58.1
Os09g0108400 Oryza sativa ssp. japonica HOM05D005714 ORTHO05D006812 1.8e-14 82.4 72 59.7
AUR62014554 Chenopodium quinoa HOM05D005714 ORTHO05D006812 2.3e-14 82.0 77 58.4
HanXRQChr15g0490211 Helianthus annuus HOM05D005714 ORTHO05D006812 2.3e-14 82.0 77 57.1
AUR62008947 Chenopodium quinoa HOM05D005714 ORTHO05D006812 3.0e-14 81.6 77 58.4
MELO3C023776.2 Cucumis melo HOM05D005714 ORTHO05D006812 3.0e-14 81.6 85 56.5
Gohir.D11G174600 Gossypium hirsutum HOM05D005714 ORTHO05D006812 3.0e-14 81.6 74 62.2
Gorai.007G187100 Gossypium raimondii HOM05D005714 ORTHO05D006812 3.0e-14 81.6 74 62.2
BolC9t58957H Brassica oleracea HOM05D005714 ORTHO05D006812 4.0e-14 81.3 74 62.2
Atru.BG.225.p Acer truncatum HOM05D005714 ORTHO05D006812 5.2e-14 80.9 73 64.4
BcaB01g05015 Brassica carinata HOM05D005714 ORTHO05D006812 5.2e-14 80.9 83 53.0
Ciclev10012317m.g Citrus clementina HOM05D005714 ORTHO05D006812 5.2e-14 80.9 72 62.5
BcaB08g36870 Brassica carinata HOM05D005714 ORTHO05D006812 6.8e-14 80.5 77 58.4
Cc07_g04960 Coffea canephora HOM05D005714 ORTHO05D006812 6.8e-14 80.5 75 61.3
SGA_v2.0_scaffold204G41660 Striga asiatica HOM05D005714 ORTHO05D006812 8.8e-14 80.1 71 54.9
Cfa007975 Carpinus fangiana HOM05D005714 ORTHO05D006812 7.5e-13 77.0 66 63.6
EL10Ac2g04627 Beta vulgaris HOM05D005714 ORTHO05D006812 1.3e-12 76.3 79 55.7
CSS0044543 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 1.7e-12 75.9 77 58.4
CSS0047938 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 1.7e-12 75.9 77 58.4
vmacro05584 Vaccinium macrocarpon HOM05D005714 ORTHO05D006812 2.2e-12 75.5 62 66.1
CDE02G2817 Ceratophyllum demersum HOM05D005714 ORTHO05D006812 3.7e-12 74.7 75 53.3
A10p17320 Brassica napus HOM05D000327 ORTHO05D006812 4.8e-12 74.3 87 49.4
PSO063G3590 Papaver somniferum HOM05D005714 ORTHO05D006812 1.4e-11 72.8 70 54.3
unitig_899.g15126 Utricularia gibba HOM05D005714 ORTHO05D006812 2.4e-11 72.0 77 49.4
PSO782G2399 Papaver somniferum HOM05D005714 ORTHO05D006812 3.1e-11 71.6 70 52.9
HPP92_027404 Vanilla planifolia HOM05D005714 ORTHO05D006812 9.1e-11 70.1 77 50.6
Zm00001eb208920 Zea mays HOM05D005714 ORTHO05D006812 3.5e-10 68.2 72 51.4
Hund16108 Selenicereus undatus HOM05D005714 ORTHO05D006812 2.9e-09 65.1 87 48.3
ATR0752G036 Amborella trichopoda HOM05D005714 ORTHO05D006812 3.8e-09 64.7 70 52.9
arahy.Tifrunner.gnm1.ann1.AEQW57 Arachis hypogaea HOM05D005714 ORTHO05D006812 3.8e-09 64.7 78 50.0
TPR.G9671 Trifolium pratense HOM05D005714 ORTHO05D006812 1.6e-07 59.3 74 45.9
C09p61150 Brassica napus HOM05D005714 ORTHO05D006812 6.8e-06 53.9 44 63.6


User provided reference genes

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