Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0163651 Rosa chinensis HOM05D005714 ORTHO05D006812 1.2e-59 233.0 119 100.0
RcHm_v2.0_Chr2g0163761 Rosa chinensis HOM05D005714 ORTHO05D006812 1.8e-20 102.8 86 68.6
FvH4_6g45610 Fragaria vesca HOM05D005714 ORTHO05D006812 1.2e-19 100.1 86 67.4
MD09G1081200 Malus domestica HOM05D005714 ORTHO05D006812 4.6e-16 88.2 85 61.2
RcHm_v2.0_Chr2g0163681 Rosa chinensis HOM05D005714 ORTHO05D006812 4.6e-16 88.2 56 85.7
Dinv33913 Davidia involucrata HOM05D005714 ORTHO05D006812 8.8e-15 84.0 86 55.8
GSVIVG01036468001 Vitis vinifera HOM05D005714 ORTHO05D006812 8.8e-15 84.0 85 60.0
MD17G1072600 Malus domestica HOM05D005714 ORTHO05D006812 2.0e-14 82.8 86 55.8
Prupe.3G242300 Prunus persica HOM05D005714 ORTHO05D006812 5.7e-14 81.3 86 59.3
Manes.02G065100 Manihot esculenta HOM05D005714 ORTHO05D006812 2.0e-11 72.8 78 53.8
Sabra17G0092200 Salix brachista HOM05D005714 ORTHO05D006812 3.4e-11 72.0 90 48.9
arahy.Tifrunner.gnm1.ann1.AEQW57 Arachis hypogaea HOM05D005714 ORTHO05D006812 1.3e-10 70.1 84 50.0
Lj7A8G44 Lonicera japonica HOM05D005714 ORTHO05D006812 1.3e-10 70.1 86 47.7
Lalb_Chr21g0317991 Lupinus albus HOM05D005714 ORTHO05D006812 2.2e-10 69.3 89 50.6
MSTRG.2945 Avicennia marina HOM05D005714 ORTHO05D006812 5.0e-10 68.2 84 46.4
arahy.Tifrunner.gnm1.ann1.R8VTVZ Arachis hypogaea HOM05D005714 ORTHO05D006812 6.5e-10 67.8 88 47.7
CiPaw.03G006400 Carya illinoinensis HOM05D005714 ORTHO05D006812 1.1e-09 67.0 86 51.2
Rhsim10G0064900 Rhododendron simsii HOM05D005714 ORTHO05D006812 1.1e-09 67.0 84 47.6
Sabra04G0076700 Salix brachista HOM05D005714 ORTHO05D006812 1.1e-09 67.0 86 45.3
Actinidia36301 Actinidia chinensis HOM05D005714 ORTHO05D006812 2.5e-09 65.9 85 47.1
CSS0016024 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 3.2e-09 65.5 86 47.7
CSS0020756 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 3.2e-09 65.5 86 47.7
Potri.017G110300 Populus trichocarpa HOM05D005714 ORTHO05D006812 3.2e-09 65.5 86 45.3
Potri.004G105400 Populus trichocarpa HOM05D005714 ORTHO05D006812 5.5e-09 64.7 56 58.9
CSS0044543 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 7.2e-09 64.3 82 47.6
CSS0047938 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 7.2e-09 64.3 82 47.6
vmacro05584 Vaccinium macrocarpon HOM05D005714 ORTHO05D006812 9.4e-09 63.9 87 44.8
PGR042G2576 Punica granatum HOM05D005714 ORTHO05D006812 1.6e-08 63.2 85 48.2
THA.LOC104802994 Tarenaya hassleriana HOM05D005714 ORTHO05D006812 2.1e-08 62.8 85 47.1
Nitab4.5_0000612g0140 Nicotiana tabacum HOM05D005714 ORTHO05D006812 2.7e-08 62.4 82 48.8
Sc10g0001430 Simmondsia chinensis HOM05D005714 ORTHO05D006812 2.7e-08 62.4 85 48.2
Actinidia18116 Actinidia chinensis HOM05D005714 ORTHO05D006812 3.6e-08 62.0 86 46.5
PSO063G3590 Papaver somniferum HOM05D005714 ORTHO05D006812 3.6e-08 62.0 80 46.2
Oeu032870.1 Olea europaea HOM05D005714 ORTHO05D006812 4.7e-08 61.6 85 45.9
PSO782G2399 Papaver somniferum HOM05D005714 ORTHO05D006812 4.7e-08 61.6 80 46.2
Atru.BG.225.p Acer truncatum HOM05D005714 ORTHO05D006812 7.9e-08 60.8 84 48.8
Duzib138G1804 Durio zibethinus HOM05D005714 ORTHO05D006812 7.9e-08 60.8 86 47.7
Psat1g062640 Pisum sativum HOM05D005714 ORTHO05D006812 7.9e-08 60.8 94 45.7
FAN09G3422 Fragaria x ananassa HOM05D005714 ORTHO05D006812 1.0e-07 60.5 58 67.2
Cc07_g04960 Coffea canephora HOM05D005714 ORTHO05D006812 1.4e-07 60.1 86 43.0
Peaxi162Scf00479g00037 Petunia axillaris HOM05D005714 ORTHO05D006812 1.4e-07 60.1 82 45.1
Thecc.04G144400 Theobroma cacao HOM05D005714 ORTHO05D006812 1.4e-07 60.1 85 47.1
CANSAT64G2721 Cannabis sativa HOM05D005714 ORTHO05D006812 1.8e-07 59.7 85 45.9
CsaV3_3G020470 Cucumis sativus L. HOM05D005714 ORTHO05D006812 1.8e-07 59.7 87 48.3
Eucgr.J01456 Eucalyptus grandis HOM05D005714 ORTHO05D006812 1.8e-07 59.7 87 40.2
CAN.G551.30 Capsicum annuum HOM05D005714 ORTHO05D006812 3.0e-07 58.9 83 50.6
MELO3C023776.2 Cucumis melo HOM05D005714 ORTHO05D006812 3.0e-07 58.9 110 38.2
Cfa007977 Carpinus fangiana HOM05D001801 ORTHO05D001739 3.9e-07 58.5 86 46.5
Migut.H00540 Erythranthe guttata HOM05D005714 ORTHO05D006812 3.9e-07 58.5 86 39.5
SalBow1G2935 Salvia bowleyana HOM05D005714 ORTHO05D006812 3.9e-07 58.5 85 41.2
SGA_v2.0_scaffold204G41660 Striga asiatica HOM05D005714 ORTHO05D006812 3.9e-07 58.5 85 42.4
FAN05G0119 Fragaria x ananassa HOM05D005714 ORTHO05D006812 5.1e-07 58.2 58 65.5
SalBow1G3421 Salvia bowleyana HOM05D005714 ORTHO05D006812 5.1e-07 58.2 85 41.2
AL6G26770 Arabidopsis lyrata HOM05D005714 ORTHO05D006812 6.7e-07 57.8 89 43.8
AL6G26782 Arabidopsis lyrata HOM05D005714 ORTHO05D006812 6.7e-07 57.8 89 43.8
ClCG05G011990 Citrullus lanatus HOM05D005714 ORTHO05D006812 1.1e-06 57.0 85 44.7
QL02p053457 Quercus lobata HOM05D005714 ORTHO05D006812 1.1e-06 57.0 79 46.8
Ciclev10012317m.g Citrus clementina HOM05D005714 ORTHO05D006812 1.5e-06 56.6 82 45.1
Nn3g17645 Nelumbo nucifera HOM05D005714 ORTHO05D006812 2.0e-06 56.2 93 43.0
Gohir.A11G168300 Gossypium hirsutum HOM05D005714 ORTHO05D006812 4.4e-06 55.1 86 43.0
MBI15_g36941_MAGBIO Magnolia biondii HOM05D005714 ORTHO05D006812 4.4e-06 55.1 83 38.6
PGSC0003DMG400018763 Solanum tuberosum HOM05D005714 ORTHO05D006812 4.4e-06 55.1 83 45.8
TPR.G9671 Trifolium pratense HOM05D005714 ORTHO05D006812 5.7e-06 54.7 88 46.6
VMungo0464G1377 Vigna mungo HOM05D005714 ORTHO05D006812 5.7e-06 54.7 47 55.3
Aa31LG11G13710 Aethionema arabicum HOM05D005714 ORTHO05D006812 7.4e-06 54.3 85 42.4
AT5G15880 Arabidopsis thaliana HOM05D005714 ORTHO05D006812 7.4e-06 54.3 89 41.6
Cpa.g.sc179.47 Carica papaya HOM05D005714 ORTHO05D006812 9.7e-06 53.9 85 42.4


User provided reference genes

Program Settings