Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0163431 Rosa chinensis HOM05D002617 ORTHO05D009035 0.0e+00 1347.4 682 100.0
FvH4_6g45490 Fragaria vesca HOM05D002617 ORTHO05D009035 0.0e+00 1121.7 695 84.3
FAN05G4565 Fragaria x ananassa HOM05D002617 ORTHO05D009035 0.0e+00 1109.4 689 83.9
Prupe.3G241200 Prunus persica HOM05D002617 ORTHO05D009035 2.1e-286 988.8 718 73.3
FAN14G1977 Fragaria x ananassa HOM05D002617 ORTHO05D009035 6.1e-278 960.7 706 74.5
FAN09G3897 Fragaria x ananassa HOM05D002617 ORTHO05D009035 1.7e-256 889.4 751 66.3
QL02p053130 Quercus lobata HOM05D002617 ORTHO05D009035 2.2e-227 792.7 711 60.5
TAR629G1601 Trochodendron aralioides HOM05D002617 ORTHO05D009035 4.3e-223 778.5 693 59.6
Dinv33921 Davidia involucrata HOM05D002617 ORTHO05D009035 1.4e-218 763.5 661 61.4
Cfa007960 Carpinus fangiana HOM05D002617 ORTHO05D009035 1.5e-215 753.4 635 61.7
TWI53G1449 Tripterygium wilfordii HOM05D002617 ORTHO05D009035 3.8e-211 738.8 687 57.5
Cfa007963 Carpinus fangiana HOM05D002617 ORTHO05D009035 5.8e-204 714.9 739 54.5
Thecc.04G140600 Theobroma cacao HOM05D002617 ORTHO05D009035 2.2e-203 713.0 685 56.5
Nn3g17671 Nelumbo nucifera HOM05D002617 ORTHO05D009035 1.1e-202 710.7 663 56.1
CiPaw.09G147400 Carya illinoinensis HOM05D002617 ORTHO05D009035 1.4e-202 710.3 634 60.3
CSS0020455 Camellia sinensis var. sinensis HOM05D002617 ORTHO05D009035 4.2e-202 708.8 716 55.0
Sabra04G0077100 Salix brachista HOM05D002617 ORTHO05D009035 5.4e-202 708.4 683 55.8
Rhsim10G0064400 Rhododendron simsii HOM05D002617 ORTHO05D009035 9.3e-202 707.6 687 55.9
Hma1.2p1_0136F.1_g062000 Hydrangea macrophylla HOM05D002617 ORTHO05D009035 2.7e-201 706.1 619 61.1
Actinidia36305 Actinidia chinensis HOM05D002617 ORTHO05D009035 3.9e-200 702.2 679 57.1
COL.COLO4_16208 Corchorus olitorius HOM05D002617 ORTHO05D009035 2.5e-199 699.5 687 55.2
Aqoxy3G00430 Aquilegia oxysepala HOM05D002617 ORTHO05D009035 4.5e-196 688.7 661 54.0
Duzib151G0578 Durio zibethinus HOM05D002617 ORTHO05D009035 9.9e-196 687.6 641 57.3
PGR042G2862 Punica granatum HOM05D002617 ORTHO05D009035 2.9e-195 686.0 683 54.2
MD09G1082500 Malus domestica HOM05D002617 ORTHO05D009035 5.4e-194 681.8 511 68.5
Peaxi162Scf00479g00211 Petunia axillaris HOM05D002617 ORTHO05D009035 5.4e-194 681.8 593 58.5
Phvul.005G010600 Phaseolus vulgaris HOM05D002617 ORTHO05D009035 7.1e-194 681.4 612 57.8
Medtr6g016985 Medicago truncatula HOM05D002617 ORTHO05D009035 4.6e-193 678.7 634 54.9
Psat1g062120 Pisum sativum HOM05D002617 ORTHO05D009035 4.6e-193 678.7 637 55.9
Cc07_g05000 Coffea canephora HOM05D002617 ORTHO05D009035 7.4e-191 671.4 671 53.9
AUR62008950 Chenopodium quinoa HOM05D002617 ORTHO05D009035 2.8e-190 669.5 687 51.7
Gohir.A10G140200 Gossypium hirsutum HOM05D002617 ORTHO05D009035 1.1e-189 667.5 684 55.3
Lj4A130G15 Lonicera japonica HOM05D002617 ORTHO05D009035 5.3e-189 665.2 673 55.6
DCAR_011250 Daucus carota HOM05D002617 ORTHO05D009035 6.9e-189 664.8 651 54.7
Lj2g0019105 Lotus japonicus HOM05D002617 ORTHO05D009035 2.0e-188 663.3 653 55.0
Gohir.D10G126600 Gossypium hirsutum HOM05D002617 ORTHO05D009035 1.2e-185 654.1 679 54.1
arahy.Tifrunner.gnm1.ann1.7SH6PF Arachis hypogaea HOM05D002617 ORTHO05D009035 4.0e-181 639.0 631 54.2
GSVIVG01036455001 Vitis vinifera HOM05D002617 ORTHO05D009035 5.3e-181 638.6 543 60.2
Oeu043862.1 Olea europaea HOM05D002617 ORTHO05D009035 4.5e-180 635.6 639 53.4
Glyma.13G047800 Glycine max HOM05D002617 ORTHO05D009035 1.0e-179 634.4 560 58.8
Ciclev10013582m.g Citrus clementina HOM05D002617 ORTHO05D009035 2.9e-179 632.9 528 62.9
Gorai.011G139500 Gossypium raimondii HOM05D002617 ORTHO05D009035 8.4e-179 631.3 679 53.2
MBI16_g23736_MAGBIO Magnolia biondii HOM05D002617 ORTHO05D009035 1.4e-178 630.6 690 48.8
Nitab4.5_0000612g0170 Nicotiana tabacum HOM05D002617 ORTHO05D009035 1.2e-177 627.5 673 52.9
Sopen03g009540 Solanum pennellii HOM05D002617 ORTHO05D009035 4.6e-177 625.5 631 54.7
Eucgr.J01458 Eucalyptus grandis HOM05D002617 ORTHO05D009035 3.3e-175 619.4 672 51.6
HPP92_020267 Vanilla planifolia HOM05D002617 ORTHO05D009035 5.9e-172 608.6 682 48.5
Nitab4.5_0003461g0060 Nicotiana tabacum HOM05D002617 ORTHO05D009035 5.0e-171 605.5 725 49.8
Haze_14108 Corylus avellana HOM05D002617 ORTHO05D009035 8.5e-171 604.7 611 55.3
SGA_v2.0_scaffold150G36618 Striga asiatica HOM05D002617 ORTHO05D009035 1.9e-170 603.6 673 50.4
EL10Ac2g04621 Beta vulgaris HOM05D002617 ORTHO05D009035 3.6e-169 599.4 694 47.7
arahy.Tifrunner.gnm1.ann1.37DWZ9 Arachis hypogaea HOM05D002617 ORTHO05D009035 1.4e-168 597.4 646 51.4
PSO478G1567 Papaver somniferum HOM05D002617 ORTHO05D009035 1.8e-168 597.0 707 47.8
PSO832G3224 Papaver somniferum HOM05D002617 ORTHO05D009035 6.7e-168 595.1 681 48.3
Sc11g0008110 Simmondsia chinensis HOM05D002617 ORTHO05D009035 6.3e-166 588.6 527 57.1
Cpa.g.sc179.39 Carica papaya HOM05D002617 ORTHO05D009035 1.1e-165 587.8 707 49.2
Ca_14082_v3 Cicer arietinum L. HOM05D002617 ORTHO05D009035 2.9e-163 579.7 539 56.0
Manes.02G065900 Manihot esculenta HOM05D002617 ORTHO05D009035 6.5e-163 578.6 552 57.4
FAN02G3888 Fragaria x ananassa HOM05D002617 ORTHO05D009035 1.9e-162 577.0 310 91.0
TPR.G9672 Trifolium pratense HOM05D002617 ORTHO05D009035 1.1e-159 567.8 503 56.1
Ah.06g191010 Amaranthus hybridus HOM05D002617 ORTHO05D009035 2.0e-156 557.0 511 55.8
AT5G16020 Arabidopsis thaliana HOM05D002617 ORTHO05D009035 3.5e-156 556.2 602 49.0
AL6G26890 Arabidopsis lyrata HOM05D002617 ORTHO05D009035 6.5e-155 552.0 616 48.4
Ah.06g191000 Amaranthus hybridus HOM05D002617 ORTHO05D009035 2.1e-153 547.0 511 55.2
CARHR197300 Cardamine hirsuta HOM05D002617 ORTHO05D009035 1.8e-152 543.9 611 47.1
Carub.0006s1420 Capsella rubella HOM05D002617 ORTHO05D009035 1.1e-151 541.2 652 45.2
Lsat_1_v5_gn_2_86600 Lactuca sativa HOM05D002617 ORTHO05D009035 5.7e-151 538.9 656 45.6
A10p23040 Brassica napus HOM05D002617 ORTHO05D009035 1.1e-149 534.6 610 47.4
BraA10t44373Z Brassica rapa HOM05D002617 ORTHO05D009035 1.1e-149 534.6 610 47.4
Thhalv10015867m.g Eutrema salsugineum HOM05D002617 ORTHO05D009035 1.4e-149 534.3 608 47.7
vmacro05580 Vaccinium macrocarpon HOM05D002617 ORTHO05D009035 1.4e-149 534.3 412 63.1
Potri.004G104500 Populus trichocarpa HOM05D002617 ORTHO05D009035 1.3e-147 527.7 566 52.7
Migut.H00535 Erythranthe guttata HOM05D002617 ORTHO05D009035 2.9e-147 526.6 579 51.8
C09p61030 Brassica napus HOM05D002617 ORTHO05D009035 3.8e-147 526.2 604 47.4
Glyma.14G157500 Glycine max HOM05D002617 ORTHO05D009035 6.5e-147 525.4 454 57.9
BolC9t58948H Brassica oleracea HOM05D002617 ORTHO05D009035 1.1e-146 524.6 604 47.4
BcaB08g36879 Brassica carinata HOM05D002617 ORTHO05D009035 4.2e-146 522.7 594 46.5
CiPaw.09G147200 Carya illinoinensis HOM05D002617 ORTHO05D009035 4.0e-144 516.2 434 62.0
Zm00001eb161540 Zea mays HOM05D002617 ORTHO05D009035 7.5e-143 511.9 648 43.8
Atru.chr8.789 Acer truncatum HOM05D002617 ORTHO05D009035 6.3e-142 508.8 435 57.7
THA.LOC104827464 Tarenaya hassleriana HOM05D002617 ORTHO05D009035 5.3e-141 505.8 548 48.9
HanXRQChr14g0452391 Helianthus annuus HOM05D002617 ORTHO05D009035 3.5e-140 503.1 603 46.4
AUR62014551 Chenopodium quinoa HOM05D002617 ORTHO05D009035 1.1e-138 498.0 523 48.8
FAN02G3008 Fragaria x ananassa HOM05D002617 ORTHO05D009035 2.5e-138 496.9 399 71.7
Aa31LG11G13590 Aethionema arabicum HOM05D002617 ORTHO05D009035 1.4e-133 481.1 641 42.4
ECA238G3370 Erigeron canadensis HOM05D002617 ORTHO05D009035 1.4e-133 481.1 531 50.7
PSO013G0088 Papaver somniferum HOM05D002617 ORTHO05D009035 7.7e-132 475.3 548 50.4
SHI30168 Sapria himalayana HOM05D002617 ORTHO05D009035 8.6e-131 471.9 567 47.8
ATR0820G227 Amborella trichopoda HOM05D002617 ORTHO05D009035 8.0e-121 438.7 616 39.9
BcaC04g18915 Brassica carinata HOM05D002617 ORTHO05D009035 8.0e-121 438.7 602 43.5
CANSAT56G0222 Cannabis sativa HOM05D002617 ORTHO05D009035 2.0e-119 434.1 358 59.5
Solyc03g045080.3 Solanum lycopersicum HOM05D002617 ORTHO05D009035 1.2e-116 424.9 463 53.8
Os01g0605400 Oryza sativa ssp. japonica HOM05D002617 ORTHO05D009035 1.7e-115 421.0 661 39.3
CAN.G153.15 Capsicum annuum HOM05D002617 ORTHO05D009035 9.8e-111 405.2 608 42.9
SalBow1G3878 Salvia bowleyana HOM05D002617 ORTHO05D009035 8.3e-110 402.1 395 56.2
Lalb_Chr10g0092311 Lupinus albus HOM05D002617 ORTHO05D009035 9.2e-109 398.7 369 54.2
unitig_899.g15127 Utricularia gibba HOM05D002617 ORTHO05D009035 1.0e-107 395.2 621 39.9
PGSC0003DMG400018767 Solanum tuberosum HOM05D002617 ORTHO05D009035 8.6e-107 392.1 606 42.4
CANSAT56G4171 Cannabis sativa HOM05D002617 ORTHO05D009035 2.4e-93 347.4 275 60.7
Actinidia18118 Actinidia chinensis HOM05D002617 ORTHO05D009035 5.6e-90 336.3 295 55.9
CDE06G1275 Ceratophyllum demersum HOM05D002617 ORTHO05D009035 5.3e-88 329.7 410 44.4
CANSAT56G3033 Cannabis sativa HOM05D002617 ORTHO05D009035 1.3e-78 298.5 398 51.8
CiPaw.09G170800 Carya illinoinensis HOM05D002617 ORTHO05D009035 5.5e-61 240.0 206 65.0
Haze_14109 Corylus avellana HOM05D002617 ORTHO05D006076 3.8e-54 217.2 151 78.1
Haze_14111 Corylus avellana HOM05D002617 ORTHO05D006076 2.7e-52 211.1 146 78.1
arahy.Tifrunner.gnm1.ann1.3A0B2Z Arachis hypogaea HOM05D002617 ORTHO05D009035 7.4e-50 203.0 183 60.7
MSTRG.23827 Avicennia marina HOM05D002617 ORTHO05D009035 1.4e-48 198.7 229 54.1
vmacro05579 Vaccinium macrocarpon HOM05D002617 ORTHO05D009035 4.5e-47 193.7 288 48.3
Lalb_Chr10g0092331 Lupinus albus HOM05D002617 ORTHO05D009035 1.1e-24 119.4 150 52.7
CBR_g48653 Chara braunii HOM05D001394 ORTHO05D001237 3.1e-24 117.9 259 27.8
Nn4g26093 Nelumbo nucifera HOM05D001650 ORTHO05D001592 1.2e-20 105.9 82 67.1
TAR705G0001 Trochodendron aralioides HOM05D001309 ORTHO05D000385 2.0e-15 88.6 59 66.1
Lalb_Chr10g0092301 Lupinus albus HOM05D002617 ORTHO05D009035 2.3e-14 85.1 55 60.0
Lalb_Chr10g0092321 Lupinus albus HOM05D002617 ORTHO05D009035 1.9e-13 82.0 68 61.8
TAR629G1810 Trochodendron aralioides HOM05D004423 ORTHO05D005464 4.1e-08 64.3 42 64.3
TAR629G3114 Trochodendron aralioides HOM05D004526 ORTHO05D002794 1.3e-06 59.3 37 64.9


User provided reference genes

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